mRNA_P-fluviatile_contig15.2350.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2350.1
Unique NamemRNA_P-fluviatile_contig15.2350.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2350.1 vs. uniprot
Match: Q8QNL9_ESV1K (EsV-1-46 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL9_ESV1K)

HSP 1 Score: 133 bits (335), Expect = 3.950e-37
Identity = 86/152 (56.58%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:    1 MFEPNLSIDISLLAVVLGLYATRMDRNLILLFLCFLFAHVVLTLDADD--AGEIEDAGGAGGLSRHDGRRRRPXXXXXXXXXXXXXXXXXXXXXXXXXSTDTFGTTVSSGVFGRQLSTPQTNLTSTVLPATSLEANGKLASARSSFFESLVS 450
            MFEPNLSID+SLLA++LGLYAT+ DRNLIL+ +C LFAHV+LT D DD  AG +E A  A   + +DG                              +TD F +T+SSGVF RQLSTPQT LTSTV P+TS EANGKLASAR SFFESLVS
Sbjct:    7 MFEPNLSIDVSLLAIILGLYATKNDRNLILVLICALFAHVLLTNDDDDLSAGVLEHARTA--AAANDGAG---LGAAVSDAAATAETPTAVAENENAVATDGFKSTLSSGVFDRQLSTPQTKLTSTVFPSTSEEANGKLASARDSFFESLVS 153
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BLAST of mRNA_P-fluviatile_contig15.2350.1 vs. uniprot
Match: D8LP79_ECTSI (EsV-1-46 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP79_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 7.200e-36
Identity = 83/152 (54.61%), Postives = 100/152 (65.79%), Query Frame = 1 
Query:    1 MFEPNLSIDISLLAVVLGLYATRMDRNLILLFLCFLFAHVVLTLDADD--AGEIEDAGGAGGLSRHDGRRRRPXXXXXXXXXXXXXXXXXXXXXXXXXSTDTFGTTVSSGVFGRQLSTPQTNLTSTVLPATSLEANGKLASARSSFFESLVS 450
            MFEPNL+ID+SLLA++LGLYAT+ DRNLIL+ +C LFAHV+LT D DD  AG +++A  A     +DG                              + D F +TVSSGVF RQLS+PQTNLTSTV P+TS EANGKLASAR SFF+SLVS
Sbjct:    1 MFEPNLAIDVSLLAIILGLYATKNDRNLILVLICALFAHVLLTNDKDDSNAGVLQNASTA--AVTNDG-----LGAAVTDVVATAVTPTTVAKNESPVAPDGFKSTVSSGVFYRQLSSPQTNLTSTVFPSTSKEANGKLASARDSFFKSLVS 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL9_ESV1K3.950e-3756.58EsV-1-46 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP79_ECTSI7.200e-3654.61EsV-1-46 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:25708..26160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size453
Cds size453
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.7791834-CDS-P-fluviatile_contig15:25707..261601622815642.7791834-CDS-P-fluviatile_contig15:25707..26160Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 25708..26160 +
1693562652.301523-CDS-P-fluviatile_contig15:25707..261601693562652.301523-CDS-P-fluviatile_contig15:25707..26160Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 25708..26160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2350.1prot_P-fluviatile_contig15.2350.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 25708..26160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2350.1

>prot_P-fluviatile_contig15.2350.1 ID=prot_P-fluviatile_contig15.2350.1|Name=mRNA_P-fluviatile_contig15.2350.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=151bp
MFEPNLSIDISLLAVVLGLYATRMDRNLILLFLCFLFAHVVLTLDADDAG
EIEDAGGAGGLSRHDGRRRRPRRRCRRCRCRRCRCSRCRPAPLEPSSTDT
FGTTVSSGVFGRQLSTPQTNLTSTVLPATSLEANGKLASARSSFFESLVS
*
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mRNA from alignment at P-fluviatile_contig15:25708..26160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2350.1 ID=mRNA_P-fluviatile_contig15.2350.1|Name=mRNA_P-fluviatile_contig15.2350.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=453bp|location=Sequence derived from alignment at P-fluviatile_contig15:25708..26160+ (Porterinema fluviatile SAG_2381)
ATGTTTGAGCCCAACCTTTCCATCGATATCAGTCTTCTCGCCGTTGTGCT
GGGGCTGTACGCGACGAGGATGGACCGCAACCTCATCCTGCTGTTCCTAT
GCTTCCTCTTTGCGCACGTCGTGCTGACTCTCGACGCCGACGACGCCGGT
GAAATCGAGGACGCCGGGGGCGCTGGGGGCCTTTCGAGGCATGATGGACG
GCGGCGGCGGCCGCGTCGCAGATGCCGCCGGTGCCGATGCCGCCGGTGCC
GATGCAGTCGGTGCCGCCCCGCTCCACTCGAGCCCTCTTCGACCGACACC
TTCGGCACCACCGTGTCTTCCGGCGTGTTTGGTCGCCAGCTGAGCACGCC
CCAGACGAACCTCACGTCGACCGTGCTCCCGGCCACATCGCTGGAGGCGA
ACGGGAAGCTAGCATCGGCCAGGAGTTCCTTCTTCGAGTCGCTCGTTTCC
TGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:25708..26160+

>mRNA_P-fluviatile_contig15.2350.1 ID=mRNA_P-fluviatile_contig15.2350.1|Name=mRNA_P-fluviatile_contig15.2350.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=906bp|location=Sequence derived from alignment at P-fluviatile_contig15:25708..26160+ (Porterinema fluviatile SAG_2381)
ATGTTTGAGCCCAACCTTTCCATCGATATCAGTCTTCTCGCCGTTGTGCT
GGGGCTGTACGCGACGAGGATGGACCGCAACCTCATCCTGCTGTTCCTAT
GCTTCCTCTTTGCGCACGTCGTGCTGACTCTCGACGCCGACGACGCCGGT
GAAATCGAGGACGCCGGGGGCGCTGGGGGCCTTTCGAGGCATGATGGACG
GCGGCGGCGGCCGCGTCGCAGATGCCGCCGGTGCCGATGCCGCCGGTGCC
GATGCAGTCGGTGCCGCCCCGCTCCACTCGAGCCCTCTTCGACCGACACC
TTCGGCACCACCGTGTCTTCCGGCGTGTTTGGTCGCCAGCTGAGCACGCC
CCAGACGAACCTCACGTCGACCGTGCTCCCGGCCACATCGCTGGAGGCGA
ACGGGAAGCTAGCATCGGCCAGGAGTTCCTTCTTCGAGTCGCTCGTTTCC
TGAATGTTTGAGCCCAACCTTTCCATCGATATCAGTCTTCTCGCCGTTGT
GCTGGGGCTGTACGCGACGAGGATGGACCGCAACCTCATCCTGCTGTTCC
TATGCTTCCTCTTTGCGCACGTCGTGCTGACTCTCGACGCCGACGACGCC
GGTGAAATCGAGGACGCCGGGGGCGCTGGGGGCCTTTCGAGGCATGATGG
ACGGCGGCGGCGGCCGCGTCGCAGATGCCGCCGGTGCCGATGCCGCCGGT
GCCGATGCAGTCGGTGCCGCCCCGCTCCACTCGAGCCCTCTTCGACCGAC
ACCTTCGGCACCACCGTGTCTTCCGGCGTGTTTGGTCGCCAGCTGAGCAC
GCCCCAGACGAACCTCACGTCGACCGTGCTCCCGGCCACATCGCTGGAGG
CGAACGGGAAGCTAGCATCGGCCAGGAGTTCCTTCTTCGAGTCGCTCGTT
TCCTGA
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