mRNA_P-fluviatile_contig15.2348.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2348.1
Unique NamemRNA_P-fluviatile_contig15.2348.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: Q8QNM2_ESV1K (EsV-1-42 n=2 Tax=root TaxID=1 RepID=Q8QNM2_ESV1K)

HSP 1 Score: 184 bits (468), Expect = 8.770e-57
Identity = 101/168 (60.12%), Postives = 122/168 (72.62%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVIADAKTMLDGMVALDECNAMPMETFVRVRRTRT-WSWPKTRSCLKSARSP**PAEGSLWQKSGK-LGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDGVLTESQAQDPMVILQEIMKDPKLMGALS 498
            M TYKAFNSMLSEFF DLA+TFDEY +I DAK MLDG+++ D+C+ +PMETFV V +        K  S       P          K  K L ++NR+AIWNYIQQLFLTGTT+LSMSGE+L+SIE LA  CMKKVE+G LTESQAQDPM+ILQEIM++ +LM AL+
Sbjct:    1 MTTYKAFNSMLSEFFRDLADTFDEYTIIMDAKVMLDGVISTDDCSTVPMETFVDVFKPHAELIMAKDPSLFDVCEIPMITGGDFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLNSIEQLANGCMKKVENGELTESQAQDPMIILQEIMQNTELMSALN 168          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.970e-42
Identity = 90/156 (57.69%), Postives = 107/156 (68.59%), Query Frame = 1
Query:   16 AFNSMLSEFFCDLAETFDEYAVIADAKTMLDGMVALDECNAMPMETFVRVRRTRT----WSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDGVLTESQAQDPMVILQEIMK 471
            AFNSMLSEFFCDLA+TFDEY VI DAKTML+G++A DEC  +PM TFV V +          PK     +         E  + ++   L  +NR+AIWNYIQQLF  GTT+LSMSG+VLSSI+SLAQ CMKKVE+G LTESQAQDPM    E +K
Sbjct:  269 AFNSMLSEFFCDLADTFDEYTVITDAKTMLEGLMAADECTEIPMGTFVEVFKPHADLIMTKDPKLFDVCEILLIT--GGEFDMAKEWTALEDDNREAIWNYIQQLFPAGTTILSMSGKVLSSIQSLAQGCMKKVENGELTESQAQDPMAETIETLK 422          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A2D6FRW8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6FRW8_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-8
Identity = 43/155 (27.74%), Postives = 73/155 (47.10%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVI------------ADAKTMLDGMVA-----LDECNAMPMETFVRVRRTRTWSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDG 414
            M++  AFN M+ +F  +L +TF E   I            ++ + ++DG +       D+ +A     F+           K    +K  +         L +K   + Q+ +DAIW YIQ L++ GTT+ S+  + LS IE +A+EC  K+E+G
Sbjct:    1 MSSVTAFNDMMGQFLAELHKTFPEEKGIKKCMSGFEIMRTSNPRLVIDGFMVGVAPFADKISAKDDTFFINES--------KNLDFIKDIK---------LEEKWASVSQQTKDAIWQYIQTLYMLGTTISSIPEDTLSMIEKVAKECADKLENG 138          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A800EGI3_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800EGI3_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 2.740e-7
Identity = 43/153 (28.10%), Postives = 70/153 (45.75%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVI------------ADAKTMLDGMVA-----LDECNAMPMETFVRVRRTRTWSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVE 408
            M +  AFN M+ +F  +L +TF E   I            ++ + ++DG +       D+ +A   ETF            K    LK  +         L +K   +  + +DAIW Y+Q L++ GTT+ S+  + LS IE +A+EC  K+E
Sbjct:    1 MTSVTAFNDMMGQFLAELHKTFPEEKGIKKCMSGFEIMRTSNPRLVIDGFMTSVTPFADKISAKD-ETFFLTEA-------KNLEFLKDVK---------LEEKWASVSTKTKDAIWQYVQTLYMLGTTISSIPADTLSMIEKVAKECADKLE 136          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A2E0WK94_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E0WK94_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 2.840e-7
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVI------------ADAKTMLDGMVALDECNAMPMETFVRVR-RTRTWSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDG 414
            M +  AFN M+ +F  +L +TF E   +            A+ K +++G +A    N  P    +  R  T       T   LK             W K+       ++AIW YIQ L++ GTT+ S+  + LS IE++A++C  K++DG
Sbjct:    1 MTSVTAFNDMMGQFLVELHKTFPEEKGLKKYIAAFEMMRSANPKLVVEGFMA----NISPHVKKINERDETFFMENANTIDFLKDINLK------DCWPKAS---DNTKNAIWQYIQTLYMLGTTITSIPADTLSMIENVAKQCADKIQDG 138          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A0P0YMS0_9PHYC (Uncharacterized protein n=1 Tax=Yellowstone lake phycodnavirus 1 TaxID=1586713 RepID=A0A0P0YMS0_9PHYC)

HSP 1 Score: 57.0 bits (136), Expect = 3.570e-7
Identity = 45/166 (27.11%), Postives = 75/166 (45.18%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVIADAKTMLDGMVALDECNAMPMETFVRVRRTRTWSWPKTRSCLKSARSP**PAEG--SLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVED-GVLTESQAQDPMV-ILQEIMKDPKLM 486
            MA+  AF  M S+F  +L+E F +   I DAK                +  F++    R        S   S ++      G   +W  S  + ++ RDAIW+Y   L++   T+  +  ++LS IES A+EC K ++D G +T+      M  ++ ++M   K M
Sbjct:    1 MASANAFGQMYSQFLGELSEAFPDNQAITDAKEK--------GFTTTTINRFMKYTSPRVNQMNARNSAFFSKKNKFADEIGLCDIWD-SPDMSKQTRDAIWSYYGNLYMLAMTMSMLPPQMLSMIESTAEECAKNIQDKGEITQENLMSSMNDMISKLMAQNKSM 157          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A424TU90_9ALTE (Uncharacterized protein n=1 Tax=Alteromonadaceae bacterium TMED7 TaxID=1986650 RepID=A0A424TU90_9ALTE)

HSP 1 Score: 56.6 bits (135), Expect = 5.320e-7
Identity = 40/158 (25.32%), Postives = 76/158 (48.10%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVI------------ADAKTMLDGMVALDECNAMPMETFVRVRRTRTW-SWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVE--DGVLTES 429
            M++  AFN M+ +F  +L +TF E   I            ++ + ++DG +A    +  P    +  +    + +  K    LK  +         + +K   +  + ++A+W Y+Q L++ GTT+ S+  + LS IE +A+EC  K+E  DG + E+
Sbjct:    1 MSSVNAFNDMMGQFLAELHKTFPEEKGIKKCMSGFEIMRTSNPRLVVDGFMA----SVTPFAEQISSKDDAFFLNEAKNLDFLKDVK---------IEEKWASISSQTKEAVWQYVQTLYMLGTTISSIPADTLSMIEKVAKECADKLEGQDGGIDEA 145          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: E5EQD8_9PHYC (Uncharacterized protein n=1 Tax=Micromonas sp. RCC1109 virus MpV1 TaxID=880161 RepID=E5EQD8_9PHYC)

HSP 1 Score: 56.6 bits (135), Expect = 5.320e-7
Identity = 42/154 (27.27%), Postives = 67/154 (43.51%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVIADAKTMLD----------------GMVALDECNAMPMETFVRVRRTRTWSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDG 414
            MA+  AFN M+ +F  +L +TF E   I    T  D                G+    E  +   ETF+ ++   T  + K  +              S W++   +    R A W Y+Q L++ GTT+ S+  + L  IE +A+EC  K++DG
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPEEKGIKKMMTSFDVLKSSNPRLVVDAYMKGVSPYAEKISAKDETFL-LKEIETIEFLKDLNIK------------SYWER---MSANTRSATWQYLQTLYMLGTTITSIPDDTLKMIEGIAKECADKMQDG 138          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: A0A7S6SXR1_9PHYC (Uncharacterized protein n=1 Tax=Bathycoccus sp. RCC716 virus 3 TaxID=2530040 RepID=A0A7S6SXR1_9PHYC)

HSP 1 Score: 56.6 bits (135), Expect = 5.590e-7
Identity = 40/141 (28.37%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVIADAKTMLDGMVALDECNA-MPMETFVR--VRRTRTWSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDG 414
            MA+  AFN M+ +F  +L +TF E   +   K  L     + E N  + ++ F+      T   S       +K +++       +L +  G   +  ++AIW Y+Q L++ GTT+ S+  + LS IE++A+EC  K+  G
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPEEKGL---KKCLSAFDLMKEANPRLVVDGFMNGVAPYTEQISAKDDSFFIKESKNLDFMKGVNLEKHWGSCSENTKNAIWQYVQTLYMLGTTIKSIPEDTLSMIETVAKECADKLGSG 138          
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Match: G8DDD4_9PHYC (Uncharacterized protein n=1 Tax=Micromonas pusilla virus PL1 TaxID=373997 RepID=G8DDD4_9PHYC)

HSP 1 Score: 55.8 bits (133), Expect = 1.030e-6
Identity = 43/150 (28.67%), Postives = 69/150 (46.00%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLAETFDEYAVIADAKTMLDGMVALDECNA-MPMETFVR-----------VRRTRTWSWPKTRSCLKSARSP**PAEGSLWQKSGKLGQENRDAIWNYIQQLFLTGTTVLSMSGEVLSSIESLAQECMKKVEDG 414
            MA+  AFN M+S+F  +L +TF +   I   K ML     L   N  + ++ F++              T   +  +T   LK             W++   +    RD  W Y+Q L++ GTT+ S+  + LS IE +A+EC  K++DG
Sbjct:    1 MASVTAFNDMMSQFLVELHKTFPDEKGI---KKMLTSFDLLKSTNPRLVVDAFMKGVSPYADKISTKDETFLLTEIETIDFLKDLNIK------GYWER---MTTNTRDVTWQYLQTLYMLGTTITSIPEDTLSMIEGIAKECADKMQDG 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Q8QNM2_ESV1K8.770e-5760.12EsV-1-42 n=2 Tax=root TaxID=1 RepID=Q8QNM2_ESV1K[more]
A0A6H5KJD3_9PHAE1.970e-4257.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D6FRW8_9ACTN1.020e-827.74Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A800EGI3_9CHLR2.740e-728.10Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A2E0WK94_9CHLR2.840e-728.48Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A0P0YMS0_9PHYC3.570e-727.11Uncharacterized protein n=1 Tax=Yellowstone lake p... [more]
A0A424TU90_9ALTE5.320e-725.32Uncharacterized protein n=1 Tax=Alteromonadaceae b... [more]
E5EQD8_9PHYC5.320e-727.27Uncharacterized protein n=1 Tax=Micromonas sp. RCC... [more]
A0A7S6SXR1_9PHYC5.590e-728.37Uncharacterized protein n=1 Tax=Bathycoccus sp. RC... [more]
G8DDD4_9PHYC1.030e-628.67Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:21308..21805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score87.0
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog654926.Q8QNM2_ESV1K
EggNOG OGs4QFDP@10239,4QX2X@35237
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size231
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.697098-UTR-P-fluviatile_contig15:21307..215741622815642.697098-UTR-P-fluviatile_contig15:21307..21574Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 21308..21574 -
1693562652.2749176-UTR-P-fluviatile_contig15:21307..215741693562652.2749176-UTR-P-fluviatile_contig15:21307..21574Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 21308..21574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.7093434-CDS-P-fluviatile_contig15:21574..218051622815642.7093434-CDS-P-fluviatile_contig15:21574..21805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 21575..21805 -
1693562652.2851193-CDS-P-fluviatile_contig15:21574..218051693562652.2851193-CDS-P-fluviatile_contig15:21574..21805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 21575..21805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2348.1prot_P-fluviatile_contig15.2348.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 21575..21805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2348.1

>prot_P-fluviatile_contig15.2348.1 ID=prot_P-fluviatile_contig15.2348.1|Name=mRNA_P-fluviatile_contig15.2348.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=77bp
MATYKAFNSMLSEFFCDLAETFDEYAVIADAKTMLDGMVALDECNAMPME
TFVRVRRTRTWSWPKTRSCLKSARSP*
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mRNA from alignment at P-fluviatile_contig15:21308..21805-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2348.1 ID=mRNA_P-fluviatile_contig15.2348.1|Name=mRNA_P-fluviatile_contig15.2348.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig15:21308..21805- (Porterinema fluviatile SAG_2381)
ATGGCGACATACAAGGCCTTCAACTCCATGCTCTCCGAGTTTTTCTGCGA CCTCGCTGAAACGTTCGACGAATACGCCGTCATCGCGGACGCAAAGACCA TGCTCGATGGGATGGTGGCCTTGGATGAATGCAACGCGATGCCGATGGAA ACTTTCGTCCGCGTTCGCCGCACGCGGACCTGGTCATGGCCAAAGACCCG AAGCTGTTTGAAGTCTGCGAGATCCCCATGATAACCGGCGGAGGGTTCGC TATGGCAGAAGAGTGGAAAGCTCGGGCAGGAGAACAGAGACGCCATCTGG AACTACATCCAGCAGCTTTTCCTGACGGGAACTACCGTGCTTTCCATGTC CGGCGAAGTTTTGAGCTCGATCGAGTCTTTGGCACAGGAGTGCATGAAGA AGGTCGAGGACGGCGTGCTCACGGAGAGCCAGGCCCAGGATCCGATGGTT ATCTTGCAAGAAATCATGAAGGATCCCAAATTGATGGGCGCCCTGAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:21308..21805-

>mRNA_P-fluviatile_contig15.2348.1 ID=mRNA_P-fluviatile_contig15.2348.1|Name=mRNA_P-fluviatile_contig15.2348.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=462bp|location=Sequence derived from alignment at P-fluviatile_contig15:21308..21805- (Porterinema fluviatile SAG_2381)
ATGGCGACATACAAGGCCTTCAACTCCATGCTCTCCGAGTTTTTCTGCGA
CCTCGCTGAAACGTTCGACGAATACGCCGTCATCGCGGACGCAAAGACCA
TGCTCGATGGGATGGTGGCCTTGGATGAATGCAACGCGATGCCGATGGAA
ACTTTCGTCCGCGTTCGCCGCACGCGGACCTGGTCATGGCCAAAGACCCG
AAGCTGTTTGAAGTCTGCGAGATCCCCATGAATGGCGACATACAAGGCCT
TCAACTCCATGCTCTCCGAGTTTTTCTGCGACCTCGCTGAAACGTTCGAC
GAATACGCCGTCATCGCGGACGCAAAGACCATGCTCGATGGGATGGTGGC
CTTGGATGAATGCAACGCGATGCCGATGGAAACTTTCGTCCGCGTTCGCC
GCACGCGGACCTGGTCATGGCCAAAGACCCGAAGCTGTTTGAAGTCTGCG
AGATCCCCATGA
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