mRNA_P-fluviatile_contig15.2347.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2347.1
Unique NamemRNA_P-fluviatile_contig15.2347.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5JH38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH38_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.800e-11
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:   37 EAIGCLMWTKLTRPDIALPLNKLQKIAH 64
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.740e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:  124 EAIGCLMWTKLTRPDIALPLNKLQKIAH 151
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5K179_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K179_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.800e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:   55 EAIGCLMWTKLTRPDIALPLNKLQKIAH 82
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5L7N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.900e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:   38 EAIGCLMWTKLTRPDIALPLNKLQKIAH 65
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5K1P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.670e-10
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDI LPLNKLQK+AH
Sbjct:   70 EAIGCLMWTKLTRPDITLPLNKLQKIAH 97
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.750e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:  156 EAIGCLMWTKLTRPDIALPLNKLQKIAH 183
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.780e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:  260 EAIGCLMWTKLTRPDIALPLNKLQKIAH 287
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5K2N9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.810e-10
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:    1 EEAIGCLMWTKLTRPDIALPLNKLQKVAH 87
            +EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:  398 KEAIGCLMWTKLTRPDIALPLNKLQKIAH 426
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5JNQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.880e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:  106 EAIGCLMWTKLTRPDIALPLNKLQKIAH 133
[Close]
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Match: A0A6H5JLR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.640e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:    1 EAIGCLMWTKLTRPDIALPLNKLQKVAH 84
            EAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:  162 EAIGCLMWTKLTRPDIALPLNKLQKIAH 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH38_9PHAE6.800e-1196.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L519_9PHAE2.740e-1096.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K179_9PHAE2.800e-1096.43Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7N4_9PHAE2.900e-1096.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1P1_9PHAE3.670e-1092.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW89_9PHAE3.750e-1096.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE3.780e-1096.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2N9_9PHAE3.810e-1093.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNQ6_9PHAE3.880e-1096.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLR7_9PHAE4.640e-1096.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:15056..16155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.0587382-CDS-P-fluviatile_contig15:15055..151531622815639.0587382-CDS-P-fluviatile_contig15:15055..15153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 15056..15153 -
1693562641.4732323-CDS-P-fluviatile_contig15:15055..151531693562641.4732323-CDS-P-fluviatile_contig15:15055..15153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 15056..15153 -
1622815639.138486-CDS-P-fluviatile_contig15:16025..161551622815639.138486-CDS-P-fluviatile_contig15:16025..16155Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 16026..16155 -
1693562641.489501-CDS-P-fluviatile_contig15:16025..161551693562641.489501-CDS-P-fluviatile_contig15:16025..16155Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 16026..16155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2347.1prot_P-fluviatile_contig15.2347.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 15056..16155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2347.1

>prot_P-fluviatile_contig15.2347.1 ID=prot_P-fluviatile_contig15.2347.1|Name=mRNA_P-fluviatile_contig15.2347.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
VGDLLELIQRQGDVWPRQLRPHQASDCLLTGLSTAGSSSLLALAAGLVEV
AKTRCRRPRPRMPAPPRPTPSAARA*
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mRNA from alignment at P-fluviatile_contig15:15056..16155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2347.1 ID=mRNA_P-fluviatile_contig15.2347.1|Name=mRNA_P-fluviatile_contig15.2347.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1100bp|location=Sequence derived from alignment at P-fluviatile_contig15:15056..16155- (Porterinema fluviatile SAG_2381)
GTGGGCGACCTTCTGGAGCTTATTCAGAGGCAGGGCGATGTCTGGCCTCG
TCAGCTTCGTCCACATCAGGCATCCGATTGCCTCCTCACCGGTTTATCCA
CCGCGGGCTCGTCATCTCTTTTGGCCCTAGGTCGGCATCGGTGGCAGCAG
GGGTGAAAGCGGTTGTGGTCACATCAAACCGCTTCAGCATGCTCTCGATG
TACGCTGTTTGCGAAAGCTTGGTGATGCCGTTCTCACATCCATCTCAATC
GCACACCCGTCATACCACGCAGTCCCCAAATCTTTCACCGGGAACTTCCT
GTTGAGGGATGCGAACAACTCCTTTCGCTCTCCCTCGTCTGCCGCCACCA
AGATGTCATCAACGTAGATCACAATCAGACCTACGACCTCCATCCACCAT
CTTACGGAAGACACACGGGTCAGCCCTGCACTGCTCGTACCCATTTTCGA
TGAGGGCATCAGCAGCTTCAAACCCCCACTCTCGACCACTCTGCTTCAGA
CCATACAGGGCACGCTCAACCTTGACCACCTTGCCAGACATGCTACTACA
CCCTTCCGGAAGCCTGAGGTATATCTCCTTTTCAGTTTGGCGTGGATGTA
TGCTTGCTTAACATCCCAGTGGGCAACTTTCTTTGCCCTTCTCGTTGGTT
ACGGCTATCACCGACTTGGTAGACGATGCAGCTGGGCATGCCGACGATGA
ATGGTGGTAGTCTATTCCGGGATTTGCGAGAAACCCCGTGCAACCAAACG
GGCCTTAAAGTCAGTTATCAGACCCTTCTCGTTCGTCTTCCACGAGAATA
TCCACTTTGAACCTATGGCCTTCCGCCCCTCGGGCAGCCCTTTGACCTTC
GTGAATGTCCCGACCTTGTTTTGACCATCTATCTCTTTCTTGATGGCCGC
ATCCCAGAAAACCTTGTACTTCGAACACATCACATCCTTGTACGTCATCG
GTAACGCTTCCACATCACACGGTTTCTGCCCGATTGGCGAGGGTATACTT
AGCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGACCTCGGC
CTCGAATGCCTGCTCCTCCTCGCCCAACACCTTCTGCAGCTCGCGCCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:15056..16155-

>mRNA_P-fluviatile_contig15.2347.1 ID=mRNA_P-fluviatile_contig15.2347.1|Name=mRNA_P-fluviatile_contig15.2347.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig15:15056..16155- (Porterinema fluviatile SAG_2381)
GTGGGCGACCTTCTGGAGCTTATTCAGAGGCAGGGCGATGTCTGGCCTCG
TCAGCTTCGTCCACATCAGGCATCCGATTGCCTCCTCACCGGTTTATCCA
CCGCGGGCTCGTCATCTCTTTTGGCCCTAGGTGGGCGACCTTCTGGAGCT
TATTCAGAGGCAGGGCGATGTCTGGCCTCGTCAGCTTCGTCCACATCAGG
CATCCGATTGCCTCCTCACCGGTTTATCCACCGCGGGCTCGTCATCTCTT
TTGGCCCTAGCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCG
ACCTCGGCCTCGAATGCCTGCTCCTCCTCGCCCAACACCTTCTGCAGCTC
GCGCCTGACTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGAC
CTCGGCCTCGAATGCCTGCTCCTCCTCGCCCAACACCTTCTGCAGCTCGC
GCCTGA
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