mRNA_P-fluviatile_contig15.2346.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2346.1
Unique NamemRNA_P-fluviatile_contig15.2346.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5KW61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW61_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 9.000e-23
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RRE+Q+VLG E+QAF AEV  SGSSQP PDPQLRPKRDDEPAVDKPVREAIGCLM
Sbjct:   57 MYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLM 113
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.420e-22
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RRE Q+VLG E+Q F AEV  SGSSQP PDPQLRPKRDDEPAVDKPVREAIGCLM
Sbjct:   74 MYRREKQEVLGPEQQTFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLM 130
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5L002_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L002_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.500e-21
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RRE+Q+VLG+E+QAF  EV  SGSSQP PDPQLRPKRDDEPAVD  VREAIGCLM
Sbjct:    4 MYRREMQEVLGQEQQAFGVEVDASGSSQPLPDPQLRPKRDDEPAVDTSVREAIGCLM 60
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.490e-21
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RRE Q+VLG E+QAF AEV  SGS QP PDPQLRPKRDDEPAVDKPVREAIGCLM
Sbjct:  406 MYRRETQEVLGPEQQAFGAEVDASGSPQPLPDPQLRPKRDDEPAVDKPVREAIGCLM 462
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5LAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.420e-20
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RRE+Q+VLG E+QAF AEV  SGSSQP PDPQLRPKRDDE AVDKPVREAIGCLM
Sbjct:  219 MYRREIQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDELAVDKPVREAIGCLM 275
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.170e-20
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RRE+Q+VLG ++QAF AEV  SGSSQP PDPQLRP +DDEPAVDKPVREAIGCLM
Sbjct:  800 MYRREMQEVLGPQQQAFGAEVDASGSSQPLPDPQLRPNKDDEPAVDKPVREAIGCLM 856
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BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5JKB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.530e-20
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M+RRE+Q+VLG E+QAF AEV  S SSQP PDPQLRPKR+DEPAVDKP REAIGCLM
Sbjct:  224 MNRREMQEVLGPEQQAFGAEVDASVSSQPLPDPQLRPKRNDEPAVDKPAREAIGCLM 280
[Close]
BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5KUU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.230e-18
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M RR+ Q+VL  ++QAF AEV  SG SQP PDPQLRP RDDEPAVDKPVREAIGCLM
Sbjct:    4 MYRRKTQEVLDPQQQAFGAEVDASGFSQPLPDPQLRPTRDDEPAVDKPVREAIGCLM 60
[Close]
BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5L5V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.960e-17
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            M R E+Q+VLG E++ F AEV  SG SQ  PDPQLRPK DD+PAVDKPVREAIGCLM
Sbjct:  175 MYRHEMQEVLGPEQEVFGAEVDASGPSQSLPDPQLRPKIDDQPAVDKPVREAIGCLM 231
[Close]
BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.190e-17
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   28 LGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVREAIGCLM 171
            LG E+QAF AEV  SGSSQP PDPQLRP RDDEPAV+KPVREAIGCLM
Sbjct:    5 LGPEQQAFGAEVDASGSSQPLPDPQLRPTRDDEPAVEKPVREAIGCLM 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW61_9PHAE9.000e-2384.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L519_9PHAE6.420e-2282.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L002_9PHAE4.500e-2178.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5G4_9PHAE8.490e-2182.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAS2_9PHAE1.420e-2082.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZI6_9PHAE2.170e-2078.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKB8_9PHAE6.530e-2078.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU2_9PHAE1.230e-1875.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5V1_9PHAE2.960e-1771.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFV7_9PHAE4.190e-1783.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:9919..10985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2346.1prot_P-fluviatile_contig15.2346.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 9925..10985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.991741-UTR-P-fluviatile_contig15:9918..99241622815638.991741-UTR-P-fluviatile_contig15:9918..9924Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 9919..9924 -
1693562641.4247754-UTR-P-fluviatile_contig15:9918..99241693562641.4247754-UTR-P-fluviatile_contig15:9918..9924Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 9919..9924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.0074859-CDS-P-fluviatile_contig15:9924..100011622815639.0074859-CDS-P-fluviatile_contig15:9924..10001Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 9925..10001 -
1693562641.4349165-CDS-P-fluviatile_contig15:9924..100011693562641.4349165-CDS-P-fluviatile_contig15:9924..10001Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 9925..10001 -
1622815639.0221548-CDS-P-fluviatile_contig15:10879..109851622815639.0221548-CDS-P-fluviatile_contig15:10879..10985Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 10880..10985 -
1693562641.4521255-CDS-P-fluviatile_contig15:10879..109851693562641.4521255-CDS-P-fluviatile_contig15:10879..10985Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 10880..10985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2346.1

>prot_P-fluviatile_contig15.2346.1 ID=prot_P-fluviatile_contig15.2346.1|Name=mRNA_P-fluviatile_contig15.2346.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=61bp
MSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQLRPKRDDEPAVDKPVR
EAIGCLMGRS*
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mRNA from alignment at P-fluviatile_contig15:9919..10985-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2346.1 ID=mRNA_P-fluviatile_contig15.2346.1|Name=mRNA_P-fluviatile_contig15.2346.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1067bp|location=Sequence derived from alignment at P-fluviatile_contig15:9919..10985- (Porterinema fluviatile SAG_2381)
ATGTCCAGGCGCGAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGCATT
CGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACCCGC
AGCTAAGTATACCCTCGCCAATCGGGCAGAAACCGTGTGATGGAAGCGTT
ACCGATGACGTACAAGGATGTGATGTGTTCGAAGTACAAGGTTTTCTGGG
ATGCGGCCATCAAGAAAGAGATAGATGGTCAAAACAAGGTCGGGACATTC
ACGAAGGTCAAAGGGGCTGCCTGAGGGGCGGAAGGCCATAGGTTCAAAGT
GGATATTCTCGTGGAAGACGAACGAGAAGGGTCTGATAACTGACTTTAAG
GCCCGTTTGGTTGCACGGGGTTTCTCGCAAATCCCGGAATAGACTACCAC
CATTCATCGTCGGCATGCCCAGCTGCATCGTCTACCAAGTCGGTGATAGC
CGTAACCAACGAGAAGGGCAAGAAAGTTGCCCACTGGGATGTTAAGCAAG
CATACATCCACGCCAAACTGAAAGAGGAGATATACCTCAGGCTTCCGGAA
GGGTGTAGTAGCATGTCTGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTA
TGGTCTGAAGCAGAGTGGTCGAGAGTGGGGGGTTTGAAGCTGCTGATGCC
CTCATCGAAAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTCTTCCG
TAAGATGGTGGATGGAGAGGTCGTAGGTCTGATTGTGATCTACGTTGATG
ACATCTTGGTGGCGGCAGACGAGGGAGAGCGAAAGGAGTTGTTCGCATCC
CTCAACAGGAAGTTCCCGGTGAAAGATTTGGGGACTGCACGTGGTATGAC
GGGTGTGCGATTGAGATGGATGTAGAGAACGGCATCACCAAGCTTTCGCA
AACAGCGTACATCGAGAGCATGCTGAAGCGGTTTGATGTGACCACAACCG
CTTTCACCCCCTGCTGCCACCGATGCCGACCTAGGGCCAAAGAGAGATGA
CGAGCCCGCGGTGGATAAACCGGTGAGGGAGGCAATCGGATGCCTGATGG
GACGAAGCTGACGAGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:9919..10985-

>mRNA_P-fluviatile_contig15.2346.1 ID=mRNA_P-fluviatile_contig15.2346.1|Name=mRNA_P-fluviatile_contig15.2346.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=366bp|location=Sequence derived from alignment at P-fluviatile_contig15:9919..10985- (Porterinema fluviatile SAG_2381)
ATGTCCAGGCGCGAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGCATT
CGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACCCGC
AGCTAAATGTCCAGGCGCGAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCA
GGCATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAG
ACCCGCAGCTAAGGCCAAAGAGAGATGACGAGCCCGCGGTGGATAAACCG
GTGAGGGAGGCAATCGGATGCCTGATGGGACGAAGCTGAGGCCAAAGAGA
GATGACGAGCCCGCGGTGGATAAACCGGTGAGGGAGGCAATCGGATGCCT
GATGGGACGAAGCTGA
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