mRNA_P-fluviatile_contig14.2340.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2340.1
Unique NamemRNA_P-fluviatile_contig14.2340.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2340.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.710e-17
Identity = 79/106 (74.53%), Postives = 84/106 (79.25%), Query Frame = -3 
Query:  516 FRVWDLSLIVYSRRMGLNRLRALWTAGRLRRAR---------QXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALKAFEGSKEQRQQILEGLFALPEIIYAKILTYL 806
            FRVWDLSLIVY+RRM LNRLRALWTA RLRRAR          XXXXXXXXXXXXXXXXXXXXXXXX      LKAF  S+EQRQQILE LFALP+IIYAK+L Y+
Sbjct:  466 FRVWDLSLIVYARRMSLNRLRALWTADRLRRARLKRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGAQVLKAFGNSREQRQQILESLFALPDIIYAKVLMYV 571
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7H8_9PHAE3.710e-1774.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:3092049..3092859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size812
Cds size540
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.3562305-CDS-P-fluviatile_contig14:3092048..30925881622815591.3562305-CDS-P-fluviatile_contig14:3092048..3092588Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3092049..3092588 +
1693562368.179777-CDS-P-fluviatile_contig14:3092048..30925881693562368.179777-CDS-P-fluviatile_contig14:3092048..3092588Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3092049..3092588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.3714445-UTR-P-fluviatile_contig14:3092588..30928591622815591.3714445-UTR-P-fluviatile_contig14:3092588..3092859Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 3092589..3092859 +
1693562368.1874464-UTR-P-fluviatile_contig14:3092588..30928591693562368.1874464-UTR-P-fluviatile_contig14:3092588..3092859Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 3092589..3092859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2340.1prot_P-fluviatile_contig14.2340.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 3092049..3092588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2340.1

>prot_P-fluviatile_contig14.2340.1 ID=prot_P-fluviatile_contig14.2340.1|Name=mRNA_P-fluviatile_contig14.2340.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=180bp
GLLRCSDFPSASNRTRRRSSSPRPTPLLDQPPLFSTTYAQAWSATISVSA
ARCVLKPSLPSATQNESSTAPNATRRMPASVLERPIRCRGISSRHASIMF
ATRQQRSRDSKLRIQKIECLANRACSRHPPPRSPPFLAVPASRARLPRPC
PLAGHPGAAVLLAAAEKLLKTYKYVRIFA*
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mRNA from alignment at P-fluviatile_contig14:3092049..3092859+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2340.1 ID=mRNA_P-fluviatile_contig14.2340.1|Name=mRNA_P-fluviatile_contig14.2340.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=811bp|location=Sequence derived from alignment at P-fluviatile_contig14:3092049..3092859+ (Porterinema fluviatile SAG_2381)
GGTCTGCTGCGTTGCTCGGACTTCCCTTCTGCCTCTAACAGAACAAGGCG
GCGCTCTTCTTCACCTCGACCAACGCCCCTCCTCGACCAACCCCCATTGT
TCTCGACGACATACGCGCAAGCATGGAGCGCAACGATAAGCGTGAGCGCA
GCTCGATGCGTGCTGAAGCCCTCTCTCCCCTCGGCGACGCAAAACGAATC
GTCGACGGCACCAAACGCCACCCGCCGGATGCCTGCGAGCGTCTTGGAAC
GTCCGATTCGTTGCCGCGGCATCTCTTCGAGACATGCCTCCATCATGTTC
GCAACGCGGCAGCAGAGGTCGCGAGATTCAAAACTTCGGATTCAAAAAAT
TGAATGCTTGGCAAACCGTGCCTGCTCTCGCCACCCTCCTCCCCGGTCTC
CTCCGTTTCTGGCCGTCCCAGCATCGCGCGCACGATTGCCCCGCCCATGC
CCCCTGGCCGGCCACCCTGGAGCAGCGGTGTTACTCGCCGCCGCCGAGAA
GCTTCTGAAAACCTACAAGTATGTGAGGATCTTTGCGTAGATAATCTCCG
GAAGGGCGAACAAGCCCTCCAGGATTTGTTGCCGCTGCTCCTTGCTGCCT
TCAAACGCCTTCAGCGCATTGCCGCCGCCGCCTCCTTCTCCTCCCGACCT
CCTCCGCGGCGACATCGACGAACGGCTGCTGCCGCTGCCGCCGCTGCCGC
GTCTCTGCCGCGCGCGGCGGAGGCGCCCGGCTGTCCACAGCGCGCGCAAG
CGGTTGAGCCCCATCCTCCTCGAGTACACGATGAGTGAAAGGTCCCACAC
GCGGAACACCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:3092049..3092859+

>mRNA_P-fluviatile_contig14.2340.1 ID=mRNA_P-fluviatile_contig14.2340.1|Name=mRNA_P-fluviatile_contig14.2340.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1080bp|location=Sequence derived from alignment at P-fluviatile_contig14:3092049..3092859+ (Porterinema fluviatile SAG_2381)
GGTCTGCTGCGTTGCTCGGACTTCCCTTCTGCCTCTAACAGAACAAGGCG
GCGCTCTTCTTCACCTCGACCAACGCCCCTCCTCGACCAACCCCCATTGT
TCTCGACGACATACGCGCAAGCATGGAGCGCAACGATAAGCGTGAGCGCA
GCTCGATGCGTGCTGAAGCCCTCTCTCCCCTCGGCGACGCAAAACGAATC
GTCGACGGCACCAAACGCCACCCGCCGGATGCCTGCGAGCGTCTTGGAAC
GTCCGATTCGTTGCCGCGGCATCTCTTCGAGACATGCCTCCATCATGTTC
GCAACGCGGCAGCAGAGGTCGCGAGATTCAAAACTTCGGATTCAAAAAAT
TGAATGCTTGGCAAACCGTGCCTGCTCTCGCCACCCTCCTCCCCGGTCTC
CTCCGTTTCTGGCCGTCCCAGCATCGCGCGCACGATTGCCCCGCCCATGC
CCCCTGGCCGGCCACCCTGGAGCAGCGGTGTTACTCGCCGCCGCCGAGAA
GCTTCTGAAAACCTACAAGTATGTGAGGATCTTTGCGTAGGGTCTGCTGC
GTTGCTCGGACTTCCCTTCTGCCTCTAACAGAACAAGGCGGCGCTCTTCT
TCACCTCGACCAACGCCCCTCCTCGACCAACCCCCATTGTTCTCGACGAC
ATACGCGCAAGCATGGAGCGCAACGATAAGCGTGAGCGCAGCTCGATGCG
TGCTGAAGCCCTCTCTCCCCTCGGCGACGCAAAACGAATCGTCGACGGCA
CCAAACGCCACCCGCCGGATGCCTGCGAGCGTCTTGGAACGTCCGATTCG
TTGCCGCGGCATCTCTTCGAGACATGCCTCCATCATGTTCGCAACGCGGC
AGCAGAGGTCGCGAGATTCAAAACTTCGGATTCAAAAAATTGAATGCTTG
GCAAACCGTGCCTGCTCTCGCCACCCTCCTCCCCGGTCTCCTCCGTTTCT
GGCCGTCCCAGCATCGCGCGCACGATTGCCCCGCCCATGCCCCCTGGCCG
GCCACCCTGGAGCAGCGGTGTTACTCGCCGCCGCCGAGAAGCTTCTGAAA
ACCTACAAGTATGTGAGGATCTTTGCGTAG
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