mRNA_P-fluviatile_contig14.2289.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2289.1
Unique NamemRNA_P-fluviatile_contig14.2289.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: D7FNR9_ECTSI (Lactoylglutathione lyase family protein / glyoxalase I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR9_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 4.520e-61
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 1
Query:   13 KDFYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFEVI 324
            K+FY+NV GFEDES LRP  +LPFDGAFVRAGATQ+HLMELPNPDPVDGRPEHGGRDRHVAF+IADL+PLK RLD AGVTYTMSKSGRAALFCRDLDGNAFE I
Sbjct:   62 KEFYVNVFGFEDESPLRP--QLPFDGAFVRAGATQVHLMELPNPDPVDGRPEHGGRDRHVAFSIADLRPLKGRLDSAGVTYTMSKSGRAALFCRDLDGNAFEFI 163          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A7S3RP39_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RP39_9SPIT)

HSP 1 Score: 160 bits (406), Expect = 1.700e-48
Identity = 76/100 (76.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:   19 FYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFE 318
            FY  VLG EDE+ LRP+  LPF GAFVRAG  QIH+MELPNPDPVDGRPEHGGRDRH+A TI DL+PLK++L    V YTMSKSGRAALFCRDLDGNA E
Sbjct:   59 FYTAVLGMEDETHLRPN--LPFPGAFVRAGQQQIHIMELPNPDPVDGRPEHGGRDRHLALTIKDLEPLKKKLQAEDVVYTMSKSGRAALFCRDLDGNAME 156          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A4D9CZQ2_9STRA (VOC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZQ2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.340e-45
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:   19 FYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFE 318
            FY++VLGFED++ LRP   LPF GAFVR GA QIHLMELPNPDP  GRPEHGGRDRHVAFT+ ++ PL  RL   GV +TMSKSGR A+FCRDLDGNA E
Sbjct:   60 FYLDVLGFEDDTHLRPST-LPFPGAFVRGGAQQIHLMELPNPDPTRGRPEHGGRDRHVAFTVDNIDPLMARLTEEGVPFTMSKSGRRAVFCRDLDGNALE 158          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A6U0W6J8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0W6J8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.080e-44
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   13 KDFYINVLGFEDESSLRPDDKLPFDGAFVR-AGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFE 318
            KDFYINVLGF DES LR + KLP+ GAF++ AG  QIHLM+LP+ DP DGRPEHGGRDRH+AF ++ + PLK +L+G G+ YTMS SGRAALFCRD DGNA E
Sbjct:   77 KDFYINVLGFTDESHLR-NPKLPYPGAFLKVAGGQQIHLMQLPSVDPKDGRPEHGGRDRHIAFFVSSIAPLKEKLEGLGIPYTMSMSGRAALFCRDPDGNAME 178          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A835Z9T1_9STRA (Lactoylglutathione lyase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 5.070e-44
Identity = 73/102 (71.57%), Postives = 80/102 (78.43%), Query Frame = 1
Query:   19 FYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFEVI 324
            FY  VLGF+DE+ LRP+  LPF GAFVRAG  QIHLMEL NPDPVDGRPEHGGRDRH+AFTI  L PL+  L   G TYT SKSGRAA+F RD DGNAFE +
Sbjct:   65 FYTEVLGFQDETELRPN--LPFKGAFVRAGGQQIHLMELENPDPVDGRPEHGGRDRHLAFTIRSLAPLEAALKRHGRTYTRSKSGRAAIFTRDPDGNAFEFL 164          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A7S2RGE4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGE4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 6.420e-43
Identity = 69/100 (69.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   19 FYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFE 318
            +Y +VLGF DES LRP  KLP+ GAF+RAG  QIHLM+LPNPDP+DGRPEHGGRDRHVA ++ DL PL  RL+   + +TMSKSGR ALFCRD DGNA E
Sbjct:   69 WYTSVLGFLDESHLRPT-KLPYPGAFLRAGDQQIHLMQLPNPDPIDGRPEHGGRDRHVALSVVDLDPLISRLNDQEIPFTMSKSGRRALFCRDPDGNAME 167          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A5J4YUU9_PORPP (Protein YwkD n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUU9_PORPP)

HSP 1 Score: 146 bits (369), Expect = 6.740e-43
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   16 DFYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFEVI 324
            +FY+NVLG  D+++ RP+  L F GAFVRAG  QIHLMELPNPD  DGRPEHGGRD+HVA  + D+ PL   L+  GV YTMSKSGR ALFCRDLDGNA E I
Sbjct:   58 EFYVNVLGMSDDTATRPN--LAFGGAFVRAGEHQIHLMELPNPDAKDGRPEHGGRDKHVALNVEDIDPLVESLNANGVFYTMSKSGRRALFCRDLDGNALEFI 158          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A8J6C8W0_DIALT (VOC domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8W0_DIALT)

HSP 1 Score: 146 bits (369), Expect = 8.840e-43
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   16 DFYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFE 318
            DFY N+LG  D+++ RP   LPF GAFVR GA Q+HLMELPNPDP+DGRP HGGRDRH+A T+A ++PL+  LD  G  +TMS SGR ALFCRD DGNA E
Sbjct:   61 DFYTNILGMGDDTAHRPST-LPFAGAFVRCGAHQLHLMELPNPDPIDGRPAHGGRDRHIAITVASIEPLRESLDAVGWAHTMSMSGRRALFCRDPDGNALE 160          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A7S1XHW6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHW6_9RHOD)

HSP 1 Score: 140 bits (354), Expect = 1.040e-40
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1
Query:   19 FYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFEVI 324
            FY +VLG +D++++RP+  L F GAFVRAG+ QIHLMELPNPDP  GRP+HGGRD+HVA T+ ++ PL   L+  GV YTMSKSGR ALFCRD+D NA E I
Sbjct:   50 FYCDVLGMQDDTAVRPE--LAFGGAFVRAGSHQIHLMELPNPDPKTGRPQHGGRDKHVALTVDNIDPLVESLERNGVAYTMSKSGRRALFCRDVDSNALEFI 149          
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Match: A0A1Y1IMJ5_KLENI (Lactoylglutathione lyase / glyoxalase I family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMJ5_KLENI)

HSP 1 Score: 140 bits (354), Expect = 7.640e-40
Identity = 63/102 (61.76%), Postives = 76/102 (74.51%), Query Frame = 1
Query:   16 DFYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDPVDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDLDGNAFEV 321
            DFY+  LG       RPDDKLP+ GA++  GA  IHLMELPNPDP++GRPEHGGRDRH   ++ DL+P+K+ LD  G+ YTMSKSGR ALFCRD D NA E+
Sbjct:  108 DFYMGTLGLHLNKE-RPDDKLPYKGAWLWVGAEMIHLMELPNPDPLEGRPEHGGRDRHTCISVVDLEPVKKVLDNKGIRYTMSKSGRPALFCRDPDENALEI 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNR9_ECTSI4.520e-6187.50Lactoylglutathione lyase family protein / glyoxala... [more]
A0A7S3RP39_9SPIT1.700e-4876.00Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A4D9CZQ2_9STRA1.340e-4572.00VOC domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6U0W6J8_9STRA4.080e-4468.93Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835Z9T1_9STRA5.070e-4471.57Lactoylglutathione lyase family protein n=1 Tax=Tr... [more]
A0A7S2RGE4_9STRA6.420e-4369.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5J4YUU9_PORPP6.740e-4366.99Protein YwkD n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A8J6C8W0_DIALT8.840e-4365.35VOC domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7S1XHW6_9RHOD1.040e-4063.73Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1Y1IMJ5_KLENI7.640e-4061.76Lactoylglutathione lyase / glyoxalase I family pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2487009..2488044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4.3e-47
Seed eggNOG ortholog2880.D7FNR9
KEGG koko:K08234
EggNOG free text desc.Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
EggNOG OGs29DJB@1,2RKPE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionlactoylglutathione lyase family protein / glyoxalase I family protein
Ec32 orthologEc-01_004500.1
Exons2
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.2470653-CDS-P-fluviatile_contig14:2487008..24872151622815630.2470653-CDS-P-fluviatile_contig14:2487008..2487215Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2487009..2487215 -
1693562556.858918-CDS-P-fluviatile_contig14:2487008..24872151693562556.858918-CDS-P-fluviatile_contig14:2487008..2487215Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2487009..2487215 -
1622815630.26362-CDS-P-fluviatile_contig14:2487927..24880441622815630.26362-CDS-P-fluviatile_contig14:2487927..2488044Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2487928..2488044 -
1693562556.8731523-CDS-P-fluviatile_contig14:2487927..24880441693562556.8731523-CDS-P-fluviatile_contig14:2487927..2488044Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2487928..2488044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2289.1prot_P-fluviatile_contig14.2289.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2487009..2488044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2289.1

>prot_P-fluviatile_contig14.2289.1 ID=prot_P-fluviatile_contig14.2289.1|Name=mRNA_P-fluviatile_contig14.2289.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MLPIKDFYINVLGFEDESSLRPDDKLPFDGAFVRAGATQIHLMELPNPDP
VDGRPEHGGRDRHVAFTIADLQPLKRRLDGAGVTYTMSKSGRAALFCRDL
DGNAFEVI
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mRNA from alignment at P-fluviatile_contig14:2487009..2488044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2289.1 ID=mRNA_P-fluviatile_contig14.2289.1|Name=mRNA_P-fluviatile_contig14.2289.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1036bp|location=Sequence derived from alignment at P-fluviatile_contig14:2487009..2488044- (Porterinema fluviatile SAG_2381)
ATGTTGCCCATTAAGGATTTCTACATTAATGTGCTGGGTTTCGAGGACGA GTCTTCTCTGCGGCCCGATGATAAGCTTCCGTTCGACGGTGCGTTCGTTC GGGCCGGTGCAACCCAGGTACTGCCTCGCAGGTGTCGGCCAAATGCCAGC GAACACAGCACAATCGGCAGGAGGCGTGCAATACGGCGATTTGCGAGTTT ACTGTGACCGCAAGCTTTTGCAGGGGTTCCGTTCGCAGATTTTTTGCTCG TGGATCACATGAGTGCGGGGGCCGCTTCAACCTTTTTTTTGTTAATTCTC TTTGCTTCTCCTTTTGGAAAGCTTGTCAGCATGGTGCAAACGACGGCCCT CGAACTCGGACATACGCGTGCTGCAAGTAAGCCACGATAAGTCGCTTTGA TCGAAAAATGCTCATTGTAGGATGATTTGCGGCCCGCAGTCGATCAGCTA GGTCCAAATGACCCTTGTTGTTGAGCAGATGCCCTTCTCGTTTGTTATAT TCGCTACATTTTTGAAGCATTGGACACCTGAAAAAAATGCATCATTCACA GTTTTTCTTCATGCAGACACGTCGATTGTCGACGCGTTTCCATTTCAGGG AGCTGAAATTCCCCTTTTGCTGTACGAACACCCGCGACAAAAACCTAGGT TTCTACCACTCATCATGGATTGTGCCGTGTGAAATTACCCATATCACGGA CTGAAGGATTCGGCTTTCGTCACTCGGGCGTAGGAGGTCGTGGGCAGACA CAATTCATTCCGCGGCGCGCCGCCAAGCCTGACGTTACCACCCATTTGGC GCTTGCCTGCGCGCTATGGGTGATGCCAGATTCACCTCATGGAGCTGCCG AATCCAGACCCGGTGGACGGCCGTCCGGAGCACGGGGGTAGGGACAGGCA CGTGGCCTTCACCATCGCAGATCTGCAGCCGCTTAAGCGCCGCCTGGATG GGGCTGGCGTGACCTACACCATGTCAAAGAGCGGTAGGGCCGCGCTCTTC TGCAGAGATCTGGATGGCAACGCGTTTGAGGTGATC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:2487009..2488044-

>mRNA_P-fluviatile_contig14.2289.1 ID=mRNA_P-fluviatile_contig14.2289.1|Name=mRNA_P-fluviatile_contig14.2289.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig14:2487009..2488044- (Porterinema fluviatile SAG_2381)
ATGTTGCCCATTAAGGATTTCTACATTAATGTGCTGGGTTTCGAGGACGA
GTCTTCTCTGCGGCCCGATGATAAGCTTCCGTTCGACGGTGCGTTCGTTC
GGGCCGGTGCAACCCAGATGTTGCCCATTAAGGATTTCTACATTAATGTG
CTGGGTTTCGAGGACGAGTCTTCTCTGCGGCCCGATGATAAGCTTCCGTT
CGACGGTGCGTTCGTTCGGGCCGGTGCAACCCAGATTCACCTCATGGAGC
TGCCGAATCCAGACCCGGTGGACGGCCGTCCGGAGCACGGGGGTAGGGAC
AGGCACGTGGCCTTCACCATCGCAGATCTGCAGCCGCTTAAGCGCCGCCT
GGATGGGGCTGGCGTGACCTACACCATGTCAAAGAGCGGTAGGGCCGCGC
TCTTCTGCAGAGATCTGGATGGCAACGCGTTTGAGGTGATCATTCACCTC
ATGGAGCTGCCGAATCCAGACCCGGTGGACGGCCGTCCGGAGCACGGGGG
TAGGGACAGGCACGTGGCCTTCACCATCGCAGATCTGCAGCCGCTTAAGC
GCCGCCTGGATGGGGCTGGCGTGACCTACACCATGTCAAAGAGCGGTAGG
GCCGCGCTCTTCTGCAGAGATCTGGATGGCAACGCGTTTGAGGTGATC
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