mRNA_P-fluviatile_contig14.2283.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2283.1
Unique NamemRNA_P-fluviatile_contig14.2283.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig14.2283.1 vs. uniprot
Match: D7FNR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR2_ECTSI)

HSP 1 Score: 458 bits (1178), Expect = 2.380e-154
Identity = 217/255 (85.10%), Postives = 238/255 (93.33%), Query Frame = 2
Query:  134 PAPGLWKRSSPNGLGSWRVESVVDSQEPNSMFVFLFDDGSVQTAVSGAGGREDQVGRWRVRGNEFSLTVDRRSKSRMLEDLRYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPLESSMATDLKKAAEINDVDKPIVPKYPKASFAGDWVLMWQDTGAVFRLHLGEDLMFESVEGLGSSQLGGRWNLWGADRMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPNSKVPLKISGYVMYGFLEPTCVGRFIMRRSQE 898
            PAPGL+ RS+PNGLGSWRVESV+D+Q+PNSMFVFLFDDGSV TAVSG  G++D  GRWRVRGNEFSLTV+R+S+SR L+DL+YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTP+ESSMA+DLKKAAE ND  K + PKY KA+ AGDWVLMWQDTGAVFRLHLGEDL FES++GLGS QLGGRWNLWG +RMFMTVVRSKSHGVQMHGDHMFWGTKLEGPP+SK+PLKISGYVMYGFLEPTCVGRFIMRRSQE
Sbjct:   29 PAPGLFGRSTPNGLGSWRVESVLDTQKPNSMFVFLFDDGSVHTAVSGTDGKDDHAGRWRVRGNEFSLTVNRKSQSRFLDDLKYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLEPTCVGRFIMRRSQE 283          
BLAST of mRNA_P-fluviatile_contig14.2283.1 vs. uniprot
Match: A0A835YV66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV66_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.680e-62
Identity = 114/254 (44.88%), Postives = 157/254 (61.81%), Query Frame = 2
Query:  152 KRSSPNGLGSWRVESVVDSQEPNSMFVFLFDDGSVQTAVSGAGGREDQVGRWRVRGNEFSLTVDRRSKSRMLEDLRYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPLESSMATDLKKAAEINDVDKPIVPKYPKASFAGDWVLMWQDT----GAVFRLHLGEDLMFESVEGLGSS-QLGGRWNLWGADRMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPNSKVPLKISGYVMYGFLEPTCVGRFIMRRSQE 898
            KR  P GLGSWR+ES VD    ++ F+ LF+DG+  TA+       ++ GRWR R NEF L++  ++++ M EDLRY+G ++++S  + GSV EGQMDP VVG F+MTP+ +SM+TDL   A   D  + I P Y K   +G W+L+        G VF L L ED  F SV G+G+   L GRWN W  ++  +TVVR KS G QM  DH +WG K+ G  +   P +I+G +MYG+LEPT +G F M R  +
Sbjct:   10 KRRPPAGLGSWRLESHVDDVT-STTFIVLFEDGTAHTAILDG---NNEGGRWRYRANEFQLSITVKNRTGMKEDLRYIGQMQEYSGRIRGSVTEGQMDPFVVGDFQMTPVVASMSTDLMALARRRDEQQSITPLYSKKVLSGPWLLVHSGVSGLRGGVFELMLTEDGGFASVRGVGAGGMLAGRWNTWDREKFILTVVRLKSRGAQMTADHQYWGFKIHG--DGVTPTRITGEIMYGYLEPTSIGCFTMMRPSQ 257          
BLAST of mRNA_P-fluviatile_contig14.2283.1 vs. uniprot
Match: A0A6H5LDX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX9_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.020e-53
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 2
Query:  377 RYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPLESSMATDLKKAAEINDVDKPIVPKYPKASFAGDWVLMWQDTGAVFRLHLGEDLMFESVEGLGSSQLGGRWNLWGADRM 715
            RYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTP+ESSMA+DLKKAAE ND  K + PKY KA+ AGDWVLMWQDTGAVFRLHLGEDL FES++GLGS QLGGRWNLWG +R+
Sbjct:  229 RYVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERL 341          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNR2_ECTSI2.380e-15485.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV66_9STRA1.680e-6244.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LDX9_9PHAE1.020e-5384.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2449028..2455122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog44056.XP_009039419.1
Preferred nameTMEM259
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004560.1
Exons7
Model size2152
Cds size819
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.6197648-UTR-P-fluviatile_contig14:2449027..24491511622815629.6197648-UTR-P-fluviatile_contig14:2449027..2449151Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2449028..2449151 +
1693562556.485923-UTR-P-fluviatile_contig14:2449027..24491511693562556.485923-UTR-P-fluviatile_contig14:2449027..2449151Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2449028..2449151 +
1622815629.7419045-UTR-P-fluviatile_contig14:2453913..24551221622815629.7419045-UTR-P-fluviatile_contig14:2453913..2455122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2453914..2455122 +
1693562556.567131-UTR-P-fluviatile_contig14:2453913..24551221693562556.567131-UTR-P-fluviatile_contig14:2453913..2455122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2453914..2455122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.6398978-CDS-P-fluviatile_contig14:2449151..24492811622815629.6398978-CDS-P-fluviatile_contig14:2449151..2449281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2449152..2449281 +
1693562556.5029655-CDS-P-fluviatile_contig14:2449151..24492811693562556.5029655-CDS-P-fluviatile_contig14:2449151..2449281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2449152..2449281 +
1622815629.6583357-CDS-P-fluviatile_contig14:2450782..24509061622815629.6583357-CDS-P-fluviatile_contig14:2450782..2450906Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2450783..2450906 +
1693562556.5125039-CDS-P-fluviatile_contig14:2450782..24509061693562556.5125039-CDS-P-fluviatile_contig14:2450782..2450906Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2450783..2450906 +
1622815629.6783245-CDS-P-fluviatile_contig14:2451306..24514601622815629.6783245-CDS-P-fluviatile_contig14:2451306..2451460Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2451307..2451460 +
1693562556.527112-CDS-P-fluviatile_contig14:2451306..24514601693562556.527112-CDS-P-fluviatile_contig14:2451306..2451460Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2451307..2451460 +
1622815629.6932318-CDS-P-fluviatile_contig14:2452154..24523331622815629.6932318-CDS-P-fluviatile_contig14:2452154..2452333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2452155..2452333 +
1693562556.5353942-CDS-P-fluviatile_contig14:2452154..24523331693562556.5353942-CDS-P-fluviatile_contig14:2452154..2452333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2452155..2452333 +
1622815629.7081966-CDS-P-fluviatile_contig14:2452677..24527771622815629.7081966-CDS-P-fluviatile_contig14:2452677..2452777Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2452678..2452777 +
1693562556.5428388-CDS-P-fluviatile_contig14:2452677..24527771693562556.5428388-CDS-P-fluviatile_contig14:2452677..2452777Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2452678..2452777 +
1622815629.7201362-CDS-P-fluviatile_contig14:2453265..24533101622815629.7201362-CDS-P-fluviatile_contig14:2453265..2453310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2453266..2453310 +
1693562556.5508015-CDS-P-fluviatile_contig14:2453265..24533101693562556.5508015-CDS-P-fluviatile_contig14:2453265..2453310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2453266..2453310 +
1622815629.7317271-CDS-P-fluviatile_contig14:2453826..24539131622815629.7317271-CDS-P-fluviatile_contig14:2453826..2453913Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2453827..2453913 +
1693562556.5587053-CDS-P-fluviatile_contig14:2453826..24539131693562556.5587053-CDS-P-fluviatile_contig14:2453826..2453913Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2453827..2453913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2283.1prot_P-fluviatile_contig14.2283.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2449152..2453913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2283.1

>prot_P-fluviatile_contig14.2283.1 ID=prot_P-fluviatile_contig14.2283.1|Name=mRNA_P-fluviatile_contig14.2283.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=273bp
MGRPAPGLWKRSSPNGLGSWRVESVVDSQEPNSMFVFLFDDGSVQTAVSG
AGGREDQVGRWRVRGNEFSLTVDRRSKSRMLEDLRYVGVLKKFSSVVEGS
VIEGQMDPAVVGKFKMTPLESSMATDLKKAAEINDVDKPIVPKYPKASFA
GDWVLMWQDTGAVFRLHLGEDLMFESVEGLGSSQLGGRWNLWGADRMFMT
VVRSKSHGVQMHGDHMFWGTKLEGPPNSKVPLKISGYVMYGFLEPTCVGR
FIMRRSQEKQQGGHEGDGRKTC*
back to top

mRNA from alignment at P-fluviatile_contig14:2449028..2455122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2283.1 ID=mRNA_P-fluviatile_contig14.2283.1|Name=mRNA_P-fluviatile_contig14.2283.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6095bp|location=Sequence derived from alignment at P-fluviatile_contig14:2449028..2455122+ (Porterinema fluviatile SAG_2381)
CCCGGCCCACGTGGTGGCAGCATGTTGCGTTCTTCTTCTGGAGTTTGCGA GCTTTGCAACAGGTTTTTCGCGGCTAAGTGTCACAGCAAGCAGCAGACCT CGACCTCAGTGTTTTTCGTTGACGATGGGCAGGCCCGCCCCTGGGCTGTG GAAGAGGAGTTCACCCAACGGGCTCGGGTCTTGGAGAGTCGAGTCGGTGG TGGACAGCCAGGAGCCCAACAGTATGTTTGTGTTCTTGTTCGATGATGGA TCTGGTGAGTTTTAGATTTTCCCCCAGCCCTGTCTCCTGTCTGCAGTCGG CAGTAAAATATCAAATGGAAAAACAAAGACGGGGGCGCCTGATCTGACCT TGGGCTGCGTGACCACGACGGATGCTCGTATGTTTTTTATCTCTCCAGAA ACAGTGAGGCGACCATACTCCTTCTTTCTCTATTGCTTGCATTGTGATGG CCGCGCTCACAACAAATCGAGAAATACACCTATGTGGCCTATGGTGCGCG TACAGCAGCTCAGCTGCCCTCCCTTTTTGTGTGTTTTCCGAACTGTTTCC GGTGGGACAGGAAAACACGCTTATGTGCTGCAAGTATGAATGCTGTGGAT GTTTTCAACAGCCTGTGTTTCGAGGCATGCATTTCACGTATCTCCTCGCG AAATGCAGGCATAGACTTCGCAGCACCAAAACATGCACTTCAAGAAAGTC TGCAACCTCAGGTGTTGCGCTTTCGTTTCATTCGGAAGGGAGAGGACACA GCAGTGCACCTGTCATGTAGTCTACTCCAATTGGGGCGTTGTCCCATTCG CTTTTTCGGCGCCTTGCGAGAGTGAACGCGGTTGCAGGTGTTTGGTTCTC TACTCGCGTTCTTTCATTCGTCGACACGGGCACAATTAACGCGATTTGGC GATAGACGCGAAAAACTCGCCCCCAAACAGTCGGCGACCTCCACGTCGGA GAACACGAACCTGATTTCAAATATCGCACACGCTGCTCCCCAAGCCGTCG GCGACCTCCACGTCGGCGGGAGAACACGAACCTGATTTCAATTATCGCAC ACAATACACGGGTTTCCACCGCGCAGCAGGCACACCCACGCAGCAGTCGA GCGTTTTCTTGCAAGCAGACGAGTCGACGCACACATCAACTGACAGTGAT CGGTGCAGTTGCTGCGGGCCGCTCAAAACAGTTAAAGAAGGCAAGGAGAG GCGGTTGGAGGCAGGAGGGACAAAGCAGACACGGACGCGCCTTGTCCCCC CTCCCCCCCTCTTTCCCGAAAACATCCCCCAAGGCGGTCTCTCGAGACAC TTGCGAACTTTCCCCCCACCATACATTTCCGCTTGCGGTCCTCCATTCGT TTTCGCGGTGTCTCCAGTATGGGCGCGGCTGGCCGAAGGGTAGTTTGCGA CGTCGTGCTCTGAAGATGTCGAGATGTCATGCCTCCACCGGCGGTCGGAA ACCCGGGCCCTGTTGCTTCCCAGACTCGCATGTCTAAAAAGACAGCGTGC GTCCATAGCGGGTGTTAACGGGTGTTAACCACACAGTATCGCGACTCCAG GCGCCCCCCGCCCCCGACACACGCACCAAGAGAGTGCGGAGCCTGCGGAA ATCTTTTTTTGCGTCCATCTGCCCATTGCGTGAAAACCCAGTTTGCACTG CCTGGCGCCATGCCTGCATCCGCCGCCGCTGCCGCCGCCATCTCTCTTTC CTCCGCGTGCGCGCGCCCGATTCATCGTTCTGAATTTTCCGTCGCGCGTG TCCAGTCCAAACGGCCGTCAGCGGAGCCGGCGGGCGGGAAGACCAGGTCG GGCGCTGGCGTGTACGCGGAAACGAGTTCTCCCTCACGGTAGACCGCCGC TCCAAGTCCAGGATGCTGGAAGACCTGAGGTAGGCATCCATTCTATCTCA GCGGCGTTTCTTTCGGGGGCGAGAGGTTGAGCGAGCAATGGGGGTGCACG CGCTAAACGATCGGCTTGCGCGCAATCAGCGGGCGTCTATCAAGCGACGA TGCATTTCCGCATAGTTGACGGCAACGGGTCTGAGGAGAAGGGGGGAATC GTAGGAAGAACAGGGAGGAGTGTTCGTGGCTTGTGGTTGAGCGCTTCACC GCCAAATCTGGCCAAAACAGCGTGTGTCTTGGGTGTGCCAGAACTATTTT TTGGCGCCTGTTCAGCGCATATGCTCAATTTACGTGAGAGTCCCCCCCCC CTCTCCGTCCGCTTTTATTTTATCCTGCATATTCCGGCTTCGGTCGTGAA CGCGCGGCGGTGCTTGCATTCGAGAGCAGGTACGTGGGCGTCTTGAAAAA GTTCAGCTCCGTGGTGGAGGGGAGCGTCATCGAAGGACAGATGGACCCTG CAGTGGTCGGAAAGTTCAAGATGACGCCACTCGAGTCCTCCATGGCAACG GATCTCAAGAAAGCCGCCGAGATTAATGATGTTGTGAGTTGCGTTGGGTC CGATCGCCCAACATTGATTCCGTACCTGTCTTCGAAACCGGGGAAGGTGT TCGTCGCGGTTTTCTCTACTGTTGCCGTACCTGCCGATCGATGGGATCAG CCTAGTTCCGGCCGCTCCGTTGTGTCGTTTCATCTAAACGTCCATCAGGT TTTTCAAGCGGCTGTTCGGTTAGATTTACTAGCTTTCCCTCTCAGAGCCC AATGTCGCGGATGTCTGGAGGCAAAAAGCTCGAGGACCGCGGCAGAGAAA CCTGACGACGTCGATGACGTCCAACGCTGCTGTTGCGCTGGTTTCATCGT TTATTGTGTTTTCGTTTGTTGTGTTTTTGGCAGCCTTCGATTTTTTCGAT TCGCAGCTTTCTTTTCCTGTTGCTGGCTCATGCAGCCGTCGACAAGTCTC GCACTGACTGGTGGTTTCTTGCAATCAGCTTCTCGGATGCGTGAAGTAAG TTGTGGAACAATATCGCTTCCGTTTGTAGTCGGTTGGTCGCTTTCACAGA TGCACGTTCAATGTCCATAGTTGGGCGTGTCACTCCAGAGCTCAACGCTT CTCTTGCGTCGTTGTTCAAACATGACTTTGAAGGATACATTCGTACCGTC GCTGACCAGAGCTCTGCTTCTGCGTGCCAACCGATCCCGCAACCCCTACT GTACGCCTCGACCGGTGGTGGCATCAGGATAAGCCTATCGTACCCAAGTA CCCTAAGGCCTCCTTCGCGGGAGACTGGGTTTTAATGTGGCAGGACACAG GGGCTGTTTTCCGCCTTCATCTCGGGGAGGATCTAATGTTCGAGAGCGTC GAGGGGCTTGGGAGCAGCCAGCTGGGCGGGAGATGGAATCTGTGGGGAGC CGACAGGTTTGTAATTTGTGGTTGCGTCGCTGCTGTTCAAGTGCGGACGC GTTTTAATTCGATGCGGCCCGGGTGTAGAGTCGAGAGTGCCGTTCCTTGT GCTTTTTGGTGAGTTTGTTGTAACGGCTTGGATGACCGTCGCGGCGAAGC TGTGAAAGAGAAAGAGGGGCTTGGGAGCACCTTGGGCCGACGGGTTCGAC AGATAGGAATTCGGAGAATCTGTGGCACTTGCACTGTCGCCACTGAATGC GTCGGAGGGCCTAGCAGCTTCGAGAGTTCGGGAGAGAAGATATGCGCCGA GTTCGTTGCGAAACGACTTTTGCGGATTCGCCCCGACACCTGACCCTCAG GATGTTCATGACCGTGGTGCGCTCCAAGAGCCATGGCGTCCAAATGCACG GGGATCACATGTTTTGGGGCACCAAGCTGGAAGGGCCACCCAACTCCAAG GTGAAGTAAGGTCCACGCGCCCCAAGTATTTTCGTCGTTGTCGCGCTGCC GCGGCGCCCTCGCCCGCTATCACTGCATAACCAATCTCTGGACGGCTGCC TTTGGCCGCCTGACGAAGTTCGGAGCCAGCGACAGCTGCACGACTCGTCG AAACACTGAATGCAACAGCAGTAGAAAAAAAGGTGAGAGCTTGCCAAAGC TAGTGCCCTGTCCCGCCACTTGCAGGCTTAACCGAAGCGAGCCCAGGCTT TGAGGGGCGGGCATGTGCGGCTCGTGTGCCGTGCTGTGCGCTGTCTCCAC CCCTCTGCAGAGGTGACCTGTGCCGCAGGCCCGGTCGCCATTTCGCCCCC CCGCGTTTTTACCCACCTCTACCGCTGTACCACTTCTCACTGGCGATTGC CGTTCGTTCCATGCCACGCCACACTATAGCATATGTTGACCTCTACCCCA CTTTCTCCTTCCGCTCGTGGTTTGATCTCTTCCAACAGGTTCCCCTGAAG ATCAGTGGTTACGTCATGTACGGCTTCTTGGAGGTGAGTCAAGCGGCGCA CTTTCGCTCAAGTGCAGATTAACATTCGGAGGGCAGGGGGCAAAACCCGC GTCGGACCGACTCTCTCGAGCATGTATTTCGCAGTCCAGGCCAAGCGCCT CAGGCGGAGGTTGGGGTTCGTTCCGTTCACACGCTGTGTCGAGGCGCGTC TTTCTTTGGGACGATGTAATGCGTTCTTGGGTCGCAAGGAAGACGGCCAG CCTTGCTGTGTTCTCGCTGTTTTTCTCTCAGGAGATGACGATTTCGGCCG TGTTGACGGATCCCCGGGCGGCTCGGTCTGAACAGTAGAGTGGTGATTGT CTGATTGGTCACTATAGCCGGCTACGCCAACCAGTAGCTTCTCGCTGAGG GTCAACTCGCTGGTCGACATTGTTGCGTTTGCCACCTTCGGCTTTGCCGA CACCGGCCACACACGTCCTCAATCCGGCGTCGTTTTTTGCTCTGCTTTTT GTGCATGTCATCCCCCGTCGAACTTGTCACTCTTTAACCCCCCGCGCAGC CTACCTGCGTCGGGCGCTTCATCATGCGGCGTAGCCAGGAGAAGCAGCAG GGTGGTCATGAAGGTGACGGACGAAAGACTTGTTGAATGAGCCTCAGCGG TTCATCAGCGGCTGCCTGGCTCTGGGTGCGAGTGCAGCACTCGGATGGCA CAGTGGAAATCAGGACTGATACTCGATCGCCTTCCCAGTGACGCGTGCAA GCCTCCACAAGCATCAGGAGGAAACTCCTTTCGAAGGTCGTCGTTGTTCG GCTGCATCTTGAGTTCTTGTTTAGCCGAATATTGTGGGTTGTCTCCTTGC CCCGAATGTCGATAATCTAGCGTGTAGATTCGGTTGTAAATATGCCGGGA AATTTTTTCTGTCGTATCCATGTCAGGAGACGGGCATTCACGGGCCTTGG GTAACGCGTGGATAACGAGTGCGGGCTCTCGGCAAGAGCGTGTGAGAAAA ATGTACACAGATTGTTTTGAAACACAGCTCCGGCGGTGGCGCTAAGCACA TTTGGCGCTCGGTTCGAATCAGGATGTACTGTGCAACATGGTCGTGGGTG CGGTGTGACAGTAACGTGTTGCCTTAGCTGCCAGGCCGACCTCCACCATA TTTTCCCGTACATGACGCAGGTCAGGTCGGTGCTCTAGGCTGCGCAGCCA TGGCATTGGATGTTTGACGTATGCTGCATGAGGAGTTTGGCACGGGTGGA TATGGATGTACGTATTTGCGAAGGTGTGAGGAGAGGAGACTTGTGAGCGG TGAAAATACCTCCATGTGGATAGTTCTAACTTGATCGAATGACCAGGACG ATCTTTTTATCTTTTTCTTGTATCAGGGGACATGTCTTGCCCGTGCATTT GGTTTGCGACCAATGTATTCGAAGTTTGAAGCGTTAGAATCGGGAGTACT GTATTTTGGAATGCAGGTGGTGGCGTGTCGGAGGAGGCGTGGGACCTATT CGACTTCGAATTGAGTGGATGTAGTGTCTGGAGTTTCACGTGGTGGAAGC GCAATGTCAAGTATGGTTTGCCTTCCACACGCGACGCGGTCGTGCCCTCC CCCCGTTGCTTCGGCTAATTCAAAGAATGTTCGAAATGTTGCGATTACGG CGTTTCTGATCACGAGATCTTGATTCTGCGGCAGAAGCCGTTCGTTGGGC GCCGCCAGTAGAAATTATGGTCCTCGTCGTGACCAAGCTCACGCCAGCTT GAGTCGCGACACTTATGTACGGTGCGTATCTTCCAACCGCAATATTGAAA CCGGCCGCGTAGACGATTCTGCAGCAGCAGTACTTCTGCAAACCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:2449028..2455122+

>mRNA_P-fluviatile_contig14.2283.1 ID=mRNA_P-fluviatile_contig14.2283.1|Name=mRNA_P-fluviatile_contig14.2283.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1638bp|location=Sequence derived from alignment at P-fluviatile_contig14:2449028..2455122+ (Porterinema fluviatile SAG_2381)
ATGGGCAGGCCCGCCCCTGGGCTGTGGAAGAGGAGTTCACCCAACGGGCT
CGGGTCTTGGAGAGTCGAGTCGGTGGTGGACAGCCAGGAGCCCAACAGTA
TGTTTGTGTTCTTGTTCGATGATGGATCTGATGGGCAGGCCCGCCCCTGG
GCTGTGGAAGAGGAGTTCACCCAACGGGCTCGGGTCTTGGAGAGTCGAGT
CGGTGGTGGACAGCCAGGAGCCCAACAGTATGTTTGTGTTCTTGTTCGAT
GATGGATCTGTCCAAACGGCCGTCAGCGGAGCCGGCGGGCGGGAAGACCA
GGTCGGGCGCTGGCGTGTACGCGGAAACGAGTTCTCCCTCACGGTAGACC
GCCGCTCCAAGTCCAGGATGCTGGAAGACCTGAGTCCAAACGGCCGTCAG
CGGAGCCGGCGGGCGGGAAGACCAGGTCGGGCGCTGGCGTGTACGCGGAA
ACGAGTTCTCCCTCACGGTAGACCGCCGCTCCAAGTCCAGGATGCTGGAA
GACCTGAGGTACGTGGGCGTCTTGAAAAAGTTCAGCTCCGTGGTGGAGGG
GAGCGTCATCGAAGGACAGATGGACCCTGCAGTGGTCGGAAAGTTCAAGA
TGACGCCACTCGAGTCCTCCATGGCAACGGATCTCAAGAAAGCCGCCGAG
ATTAATGATGTTGTACGTGGGCGTCTTGAAAAAGTTCAGCTCCGTGGTGG
AGGGGAGCGTCATCGAAGGACAGATGGACCCTGCAGTGGTCGGAAAGTTC
AAGATGACGCCACTCGAGTCCTCCATGGCAACGGATCTCAAGAAAGCCGC
CGAGATTAATGATGTTGATAAGCCTATCGTACCCAAGTACCCTAAGGCCT
CCTTCGCGGGAGACTGGGTTTTAATGTGGCAGGACACAGGGGCTGTTTTC
CGCCTTCATCTCGGGGAGGATCTAATGTTCGAGAGCGTCGAGGGGCTTGG
GAGCAGCCAGCTGGGCGGGAGATGGAATCTGTGGGGAGCCGACAGGATAA
GCCTATCGTACCCAAGTACCCTAAGGCCTCCTTCGCGGGAGACTGGGTTT
TAATGTGGCAGGACACAGGGGCTGTTTTCCGCCTTCATCTCGGGGAGGAT
CTAATGTTCGAGAGCGTCGAGGGGCTTGGGAGCAGCCAGCTGGGCGGGAG
ATGGAATCTGTGGGGAGCCGACAGGATGTTCATGACCGTGGTGCGCTCCA
AGAGCCATGGCGTCCAAATGCACGGGGATCACATGTTTTGGGGCACCAAG
CTGGAAGGGCCACCCAACTCCAAGGATGTTCATGACCGTGGTGCGCTCCA
AGAGCCATGGCGTCCAAATGCACGGGGATCACATGTTTTGGGGCACCAAG
CTGGAAGGGCCACCCAACTCCAAGGTTCCCCTGAAGATCAGTGGTTACGT
CATGTACGGCTTCTTGGAGGTTCCCCTGAAGATCAGTGGTTACGTCATGT
ACGGCTTCTTGGAGCCTACCTGCGTCGGGCGCTTCATCATGCGGCGTAGC
CAGGAGAAGCAGCAGGGTGGTCATGAAGGTGACGGACGAAAGACTTGTTG
ACCTACCTGCGTCGGGCGCTTCATCATGCGGCGTAGCCAGGAGAAGCAGC
AGGGTGGTCATGAAGGTGACGGACGAAAGACTTGTTGA
back to top