mRNA_P-fluviatile_contig14.2282.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2282.1
Unique NamemRNA_P-fluviatile_contig14.2282.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2442387..2442913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size527
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2282.1prot_P-fluviatile_contig14.2282.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2442393..2442797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.1781082-UTR-P-fluviatile_contig14:2442386..24423921622815591.1781082-UTR-P-fluviatile_contig14:2442386..2442392Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2442387..2442392 +
1693562368.1016576-UTR-P-fluviatile_contig14:2442386..24423921693562368.1016576-UTR-P-fluviatile_contig14:2442386..2442392Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2442387..2442392 +
1622815591.2001216-UTR-P-fluviatile_contig14:2442797..24429131622815591.2001216-UTR-P-fluviatile_contig14:2442797..2442913Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2442798..2442913 +
1693562368.1233122-UTR-P-fluviatile_contig14:2442797..24429131693562368.1233122-UTR-P-fluviatile_contig14:2442797..2442913Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2442798..2442913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.1895769-CDS-P-fluviatile_contig14:2442392..24427971622815591.1895769-CDS-P-fluviatile_contig14:2442392..2442797Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2442393..2442797 +
1693562368.1136901-CDS-P-fluviatile_contig14:2442392..24427971693562368.1136901-CDS-P-fluviatile_contig14:2442392..2442797Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2442393..2442797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2282.1

>prot_P-fluviatile_contig14.2282.1 ID=prot_P-fluviatile_contig14.2282.1|Name=mRNA_P-fluviatile_contig14.2282.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
MHGEMERIDGEKRPTSRGTRRMRVPEAKGVTRGGGEGRRRKHRQQRQHLN
QATFTDNGSASKHGSFRGAHILHRVDGEMSTYPFFLVKLNAVQRAAGLRH
ANDNCNPSLLKPTSPSFVERNKPHRRPYKLSPRA*
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mRNA from alignment at P-fluviatile_contig14:2442387..2442913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2282.1 ID=mRNA_P-fluviatile_contig14.2282.1|Name=mRNA_P-fluviatile_contig14.2282.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=527bp|location=Sequence derived from alignment at P-fluviatile_contig14:2442387..2442913+ (Porterinema fluviatile SAG_2381)
AGGTGGATGCACGGTGAAATGGAGCGAATCGATGGAGAAAAACGTCCCAC
GAGCAGGGGAACGCGCCGCATGCGTGTGCCGGAAGCCAAAGGTGTTACGA
GGGGAGGAGGCGAGGGGAGGAGGCGGAAGCACCGGCAGCAGCGCCAGCAC
CTGAACCAAGCAACCTTCACGGACAACGGCTCAGCGAGTAAACACGGGTC
TTTTCGCGGCGCTCATATTCTGCACCGCGTCGACGGAGAAATGAGCACCT
ACCCTTTCTTTCTTGTAAAACTGAACGCAGTACAACGTGCCGCAGGCCTA
AGACACGCCAACGACAACTGCAACCCGTCTCTTCTCAAACCAACCAGCCC
CTCTTTTGTCGAGAGAAACAAGCCACATCGACGTCCCTATAAGCTTTCGC
CCCGTGCATAAATGTTTCCAGCAACCGTCTGAGGGCACCCGCACCTGAAA
GTCTCCCGACTCAAGCAAGTACAGGACCAGGGACTCCACGTTGTACGTCA
CCACCGCACTGCTGCTACTGCTGACGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:2442387..2442913+

>mRNA_P-fluviatile_contig14.2282.1 ID=mRNA_P-fluviatile_contig14.2282.1|Name=mRNA_P-fluviatile_contig14.2282.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=810bp|location=Sequence derived from alignment at P-fluviatile_contig14:2442387..2442913+ (Porterinema fluviatile SAG_2381)
ATGCACGGTGAAATGGAGCGAATCGATGGAGAAAAACGTCCCACGAGCAG
GGGAACGCGCCGCATGCGTGTGCCGGAAGCCAAAGGTGTTACGAGGGGAG
GAGGCGAGGGGAGGAGGCGGAAGCACCGGCAGCAGCGCCAGCACCTGAAC
CAAGCAACCTTCACGGACAACGGCTCAGCGAGTAAACACGGGTCTTTTCG
CGGCGCTCATATTCTGCACCGCGTCGACGGAGAAATGAGCACCTACCCTT
TCTTTCTTGTAAAACTGAACGCAGTACAACGTGCCGCAGGCCTAAGACAC
GCCAACGACAACTGCAACCCGTCTCTTCTCAAACCAACCAGCCCCTCTTT
TGTCGAGAGAAACAAGCCACATCGACGTCCCTATAAGCTTTCGCCCCGTG
CATAAATGCACGGTGAAATGGAGCGAATCGATGGAGAAAAACGTCCCACG
AGCAGGGGAACGCGCCGCATGCGTGTGCCGGAAGCCAAAGGTGTTACGAG
GGGAGGAGGCGAGGGGAGGAGGCGGAAGCACCGGCAGCAGCGCCAGCACC
TGAACCAAGCAACCTTCACGGACAACGGCTCAGCGAGTAAACACGGGTCT
TTTCGCGGCGCTCATATTCTGCACCGCGTCGACGGAGAAATGAGCACCTA
CCCTTTCTTTCTTGTAAAACTGAACGCAGTACAACGTGCCGCAGGCCTAA
GACACGCCAACGACAACTGCAACCCGTCTCTTCTCAAACCAACCAGCCCC
TCTTTTGTCGAGAGAAACAAGCCACATCGACGTCCCTATAAGCTTTCGCC
CCGTGCATAA
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