mRNA_P-fluviatile_contig14.2279.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2279.1
Unique NamemRNA_P-fluviatile_contig14.2279.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2279.1 vs. uniprot
Match: A0A6H5JVN5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.200e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 DAAFITSPLWEQVVRMRLSLSQRDKDDTAYASFVRRVGENKIPNDTFPDGSCLMPFS 171
            +A+FI+S LW +  RMRL++SQRD++D AYASFVR +GE   P  TF DG+  +P S
Sbjct:  186 EASFISSDLWPKTKRMRLTMSQRDEEDPAYASFVRSIGEKIHPTTTFSDGAKRVPLS 242
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BLAST of mRNA_P-fluviatile_contig14.2279.1 vs. uniprot
Match: D8LEP4_ECTSI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP4_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.330e-10
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 DAAFITSPLWEQVVRMRLSLSQRDKDDTAYASFVRRVGENKIPNDTFPDGSCLMPF 168
            DA+ I+SPLW  V RMRL++SQRD++D  YA+FVR +G    P+ T  DG   +P 
Sbjct:   52 DASIISSPLWPYVHRMRLTISQRDREDAPYAAFVRNIGIGAQPHTTTDDGIDAVPL 107
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BLAST of mRNA_P-fluviatile_contig14.2279.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 8.150e-10
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 DAAFITSPLWEQVVRMRLSLSQRDKDDTAYASFVRRVGENKIP 129
            DAA I+S  W+ + R+RL+ SQRDKDD AYASFVR VGE+K+P
Sbjct:   87 DAAVISSHRWKHISRLRLTKSQRDKDDPAYASFVRNVGEDKLP 129
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BLAST of mRNA_P-fluviatile_contig14.2279.1 vs. uniprot
Match: A0A6H5K5W5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.710e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 DAAFITSPLWEQVVRMRLSLSQRDKDDTAYASFVRRVGENKIPNDTFPDGSCL 159
            DAAFI+S LW  V RM+L+ SQRD++D  Y++FVR +GE   P     D + +
Sbjct:   92 DAAFISSVLWTNVHRMKLTKSQRDREDPQYSAFVRAIGEGTHPTTAIHDSNVI 144
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BLAST of mRNA_P-fluviatile_contig14.2279.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.610e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 DAAFITSPLWEQVVRMRLSLSQRDKDDTAYASFV 102
            DA+ I+SPLW  V RMRL++SQRD++D AYAS +
Sbjct:  620 DASLISSPLWPHVQRMRLTISQRDREDAAYASAI 653
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JVN5_9PHAE2.200e-1254.39ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D8LEP4_ECTSI1.330e-1050.00ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5L0V2_9PHAE8.150e-1065.12ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K5W5_9PHAE5.710e-847.17ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0I5_9PHAE2.610e-561.76ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2434433..2434603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D8LEP4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.35603-CDS-P-fluviatile_contig14:2434432..24346031622815629.35603-CDS-P-fluviatile_contig14:2434432..2434603Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2434433..2434603 +
1693562555.919354-CDS-P-fluviatile_contig14:2434432..24346031693562555.919354-CDS-P-fluviatile_contig14:2434432..2434603Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2434433..2434603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2279.1prot_P-fluviatile_contig14.2279.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2434433..2434603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2279.1

>prot_P-fluviatile_contig14.2279.1 ID=prot_P-fluviatile_contig14.2279.1|Name=mRNA_P-fluviatile_contig14.2279.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=57bp
DAAFITSPLWEQVVRMRLSLSQRDKDDTAYASFVRRVGENKIPNDTFPDG
SCLMPFS
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mRNA from alignment at P-fluviatile_contig14:2434433..2434603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2279.1 ID=mRNA_P-fluviatile_contig14.2279.1|Name=mRNA_P-fluviatile_contig14.2279.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=171bp|location=Sequence derived from alignment at P-fluviatile_contig14:2434433..2434603+ (Porterinema fluviatile SAG_2381)
GATGCTGCATTCATAACGAGTCCCTTGTGGGAGCAAGTCGTGCGCATGCG
GCTTAGTCTTTCCCAAAGGGACAAAGATGATACCGCTTACGCATCGTTTG
TCAGACGTGTAGGAGAGAATAAAATACCTAACGATACATTCCCGGACGGG
TCTTGCCTCATGCCATTTTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:2434433..2434603+

>mRNA_P-fluviatile_contig14.2279.1 ID=mRNA_P-fluviatile_contig14.2279.1|Name=mRNA_P-fluviatile_contig14.2279.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=342bp|location=Sequence derived from alignment at P-fluviatile_contig14:2434433..2434603+ (Porterinema fluviatile SAG_2381)
GATGCTGCATTCATAACGAGTCCCTTGTGGGAGCAAGTCGTGCGCATGCG
GCTTAGTCTTTCCCAAAGGGACAAAGATGATACCGCTTACGCATCGTTTG
TCAGACGTGTAGGAGAGAATAAAATACCTAACGATACATTCCCGGACGGG
TCTTGCCTCATGCCATTTTCCGATGCTGCATTCATAACGAGTCCCTTGTG
GGAGCAAGTCGTGCGCATGCGGCTTAGTCTTTCCCAAAGGGACAAAGATG
ATACCGCTTACGCATCGTTTGTCAGACGTGTAGGAGAGAATAAAATACCT
AACGATACATTCCCGGACGGGTCTTGCCTCATGCCATTTTCC
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