|
|
Homology
BLAST of mRNA_P-fluviatile_contig14.2277.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI) HSP 1 Score: 477 bits (1227), Expect = 9.210e-161 Identity = 292/557 (52.42%), Postives = 334/557 (59.96%), Query Frame = 1
Query: 1 MDGVIAIKRTQLALILMGMFVVACVPVVSVVVLKFFFSVRLRSRLLNDDCKRFTGVFFVLATKAIFIPALCGGGRLCERRVHTLMTDDHDGDAGGRQGHRRRKNHAH-ENETHYREEGGDGREERPTGLPRAPHGGGASKRQPATPPGVEGEGGSGGTGEEDRRAGRVVNDSSN-RTVLDLPPRHWMCIVCKKVNVLPEDWTGRAAKVVQVVIKRKEVDKRAMYGAFRAKPGFPSCRKCQTPFNYSFRNGGGLDQTPRQQRGREVLEAALSRPATAARTR-------RPVPSATVEGXXXXXXXXXXXXSPASGVLARVLKKVARFLHAFASRSQRRRDKDMLIDAGGXXXXXEPGGAGDEPAEPELWYGRDFRRQLKTYFKPQLERPSLSPPLARXXXXXXXXXXXXXDRYPVGARVACFAGKGAWYPGAVTASRENNTYDVRYDNGDIVQHVFSHMIRFEPTRTDSFLLCCYYGLALAAAGAWPLAGSWYFTSTSAPDTTDEVSSGTGTAAAIVALPALLVGVAGVFAVAVQFYGIHAEIRSAGLCITAKFAAIF 1644
MDG I ++RT LA +L+ MF A VP V VLK FFSVRLRS L+ DD +RF GVFF LATKA+ +PA CGGGRLCERRVH L D D R N A E + GGD +EE L RAP GG + +R A R+ + + RT LDLPPRHWMC VCKKVN+LP++W GRA K V VVIKRK VD RAMYG F+ KPG P C KC+TPFNYS+RNGGG D QQR + +L+AALSRP AA T P SA V+G A+ V RVL K ARF+ A S +RRR + G D EPELWYGR+FRRQL TYFKP+L RP+ +RYPVGARVACFAGK AWYPGAV ASREN+TYDVRYDNGDI QHVFSHMIRFEP DS L CCYYGLALAAA AWPLAGSWYF+STSA VALPAL+VG AG AVA QF+ I+A+ RS GLC+ KFAA++
Sbjct: 1 MDGAIPVERTHLAALLLVMFAAAAVPAVLAAVLKMFFSVRLRSSLVRDDRRRFVGVFFFLATKAVSVPAFCGGGRLCERRVHALKDDATSTDXXXXXXXXXRDNEAALERGGGGKTIGGDAQEE--GDLQRAPLGGSSGRRXXXXXXXXXXXXXXXXXXXXXXSANRLADGGTRKRTELDLPPRHWMCTVCKKVNMLPDEWNGRAGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCRTPFNYSWRNGGGSDNLM-QQRQQRLLDAALSRPTNAASTAVAAGSATDPALSAAVDGPMDAENGGVA----AAAVHRRVLAKAARFIRALCSPCRRRRAASSK--------PFDGRGGSDAVEEPELWYGREFRRQLMTYFKPELSRPAAG-----------------GERYPVGARVACFAGKDAWYPGAVAASRENDTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAAXXXXXXXXX------XVALPALVVGTAGTLAVAFQFWEIYADNRSTGLCVATKFAAVW 519
BLAST of mRNA_P-fluviatile_contig14.2277.1 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE) HSP 1 Score: 352 bits (904), Expect = 5.670e-112 Identity = 206/358 (57.54%), Postives = 232/358 (64.80%), Query Frame = 1
Query: 580 VLPEDWTGRAAKVVQVVIKRKEVDKRAMYGAFRAKPGFPSCRKCQTPFNYSFRNGGGLDQTPRQQRGREVLEAALSRPATAARTRRPVPSAT---VEGXXXXXXXXXXXXSPASGVLARVLKKVARFLHAFASRSQRRRDKDMLIDAGGXXXXXEPGGAGDEPAEPELWYGRDFRRQLKTYFKPQLERPSLSPPLARXXXXXXXXXXXXXDRYPVGARVACFAGKGAWYPGAVTASRENNTYDVRYDNGDIVQHVFSHMIRFEPTRTDSFLLCCYYGLALAAAGAWPLAGSWYFTSTSAPDTTDEVSSGTGTAAAIVALPALLVGVAGVFAVAVQFYGIHAEIRSAGLCITAKFAAIF 1644
+LP++W GR K V VVIKRK VD RAMYG F+ KPG P C KC TPFNYS+RNGGG D+ QQR + +L+AALSRP +AA T SAT + A+ V RVL K ARF+ S+ +RRR G GGA D EPELWYGR+FRRQL TYFKP+L RP+ S RYPVGARVACFAGK AWYPGAV ASRENNTYDVRYDNGDI QHVFSHMIRFEP DS L CCYYGLALAAA AWPLAGSWYF+STSA TD +S AAA+VALPAL+VG AG AVA Q + I+A+ RS GLC+ KFA IF
Sbjct: 1 MLPDEWDGRTGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCHTPFNYSWRNGGGSDKLM-QQRQQRLLDAALSRPTSAASTAVAAGSATDPALSAAADGLMNAENGGVAAAAVHRRVLAKAARFIRGIYSQCRRRRAASSKTFDG-------RGGA-DAVEEPELWYGREFRRQLMTYFKPELSRPAAS-----------------GGRYPVGARVACFAGKDAWYPGAVAASRENNTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAA--TDAATS----AAALVALPALVVGTAGTLAVAFQIWEIYADNRSTGLCVATKFAVIF 326
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_004610.1 |
| Exons | 3 |
| Model size | 1644 |
| Cds size | 1644 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815629.1234062-CDS-P-fluviatile_contig14:2403365..2404436 | 1622815629.1234062-CDS-P-fluviatile_contig14:2403365..2404436 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 2403366..2404436 - |
| 1693562555.545245-CDS-P-fluviatile_contig14:2403365..2404436 | 1693562555.545245-CDS-P-fluviatile_contig14:2403365..2404436 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 2403366..2404436 - |
| 1622815629.1364477-CDS-P-fluviatile_contig14:2404856..2405267 | 1622815629.1364477-CDS-P-fluviatile_contig14:2404856..2405267 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 2404857..2405267 - |
| 1693562555.553784-CDS-P-fluviatile_contig14:2404856..2405267 | 1693562555.553784-CDS-P-fluviatile_contig14:2404856..2405267 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 2404857..2405267 - |
| 1622815629.147711-CDS-P-fluviatile_contig14:2405562..2405724 | 1622815629.147711-CDS-P-fluviatile_contig14:2405562..2405724 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 2405563..2405724 - |
| 1693562555.5624313-CDS-P-fluviatile_contig14:2405562..2405724 | 1693562555.5624313-CDS-P-fluviatile_contig14:2405562..2405724 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 2405563..2405724 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig14.2277.1 >prot_P-fluviatile_contig14.2277.1 ID=prot_P-fluviatile_contig14.2277.1|Name=mRNA_P-fluviatile_contig14.2277.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=548bp
MDGVIAIKRTQLALILMGMFVVACVPVVSVVVLKFFFSVRLRSRLLNDDC KRFTGVFFVLATKAIFIPALCGGGRLCERRVHTLMTDDHDGDAGGRQGHR RRKNHAHENETHYREEGGDGREERPTGLPRAPHGGGASKRQPATPPGVEG EGGSGGTGEEDRRAGRVVNDSSNRTVLDLPPRHWMCIVCKKVNVLPEDWT GRAAKVVQVVIKRKEVDKRAMYGAFRAKPGFPSCRKCQTPFNYSFRNGGG LDQTPRQQRGREVLEAALSRPATAARTRRPVPSATVEGGGGGSDDDNGGG SPASGVLARVLKKVARFLHAFASRSQRRRDKDMLIDAGGGRGEGEPGGAG DEPAEPELWYGRDFRRQLKTYFKPQLERPSLSPPLARGGGRTDGGDGGDG DRYPVGARVACFAGKGAWYPGAVTASRENNTYDVRYDNGDIVQHVFSHMI RFEPTRTDSFLLCCYYGLALAAAGAWPLAGSWYFTSTSAPDTTDEVSSGT GTAAAIVALPALLVGVAGVFAVAVQFYGIHAEIRSAGLCITAKFAAIF back to topmRNA from alignment at P-fluviatile_contig14:2403366..2405724- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig14.2277.1 ID=mRNA_P-fluviatile_contig14.2277.1|Name=mRNA_P-fluviatile_contig14.2277.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2359bp|location=Sequence derived from alignment at P-fluviatile_contig14:2403366..2405724- (Porterinema fluviatile SAG_2381) ATGGACGGTGTGATAGCAATAAAGCGTACGCAGCTGGCGTTGATACTCAT
GGGCATGTTTGTGGTAGCGTGCGTGCCTGTGGTGTCGGTGGTCGTCCTCA
AGTTCTTCTTCTCGGTCAGGCTTCGATCGCGTCTCCTCAACGACGACTGC
AAGCGCTTTACGGTGAGCAAACGACGATAAAACTGCAGCAGCTGCCGTAT
TTCGCCAGAATTTTTTTAGTTGGAAGTCCTGGTGGAGTTCCAATAAAAAC
TTGTATGGATTTTTTTGCATAAAACTCATGGAAAATTCCAAGTTTAGTGT
ACAACAATACGCGAAGGGATGCCCGAGGTCCCGATCTAAGGTACCAGGGT
GTGAGGCCCATCGAAACTTATGAACTCCCCGTTCCCGAACTTATTTCTGC
GCTATATGCCACTTGATATTATGACACCCCTGACCTTTAACCCCGCCTCG
CATGCAGGGTGTATTTTTTGTACTGGCGACCAAGGCTATCTTCATCCCGG
CCTTATGCGGCGGCGGACGGCTGTGCGAGCGCCGGGTCCATACTCTCATG
ACCGACGATCACGACGGCGACGCGGGCGGCCGGCAAGGCCACCGCCGAAG
AAAAAACCACGCGCACGAGAATGAAACTCATTATAGAGAAGAGGGCGGCG
ACGGACGAGAGGAGAGGCCGACAGGTCTACCTCGAGCCCCGCACGGAGGT
GGAGCTAGTAAACGTCAGCCGGCGACGCCACCGGGGGTCGAGGGAGAGGG
TGGGAGTGGTGGGACGGGTGAGGAGGATAGGCGCGCCGGCAGGGTGGTGA
ACGACTCGAGCAACAGGACGGTCCTCGATCTACCTCCTCGGCACTGGATG
TGCATCGTGTGTAAGAAGGTCCGTTGGTTCTCCTGTCACTTCTGAGTGCC
TGAATCCTCGTCCGCCTTCGCCTAGTGTTTGCACCGAAGAGTCTCAAGGG
TACTTAAGTTCTCCGACAGGGGGGTAGTAGACGAAGCTTCGTGAATAATT
TGACATGTGGGCGCATGAGGTAGGCTATAAAGTAGCAAAACCTGTTGCCA
AAAAGCGGAATGTGCACACAGATGCTCTTCCTGCAGATTGCTGGGTTCTT
ACCTGCTTATTGCGTGCAAATATTGGATGTTGGAGCGGATGCTGCGTCGG
GCCGGAGGCCTCGCGTATGTAGCAGCACCCCAGGCTGCGACTCATTTCGC
TTTTGGAGTGCAAAAGCCCCTGCCGTGCGCAATGATATCAACCCTTCCTC
CCCGCCCCGACCTCCCTCGCTACCAAACACTGCAAAAGGTAAACGTTTTG
CCGGAAGATTGGACCGGGCGGGCCGCAAAGGTCGTCCAGGTCGTCATAAA
ACGGAAAGAGGTGGACAAGCGAGCCATGTACGGGGCCTTTCGGGCCAAGC
CAGGGTTTCCGTCCTGCCGCAAGTGCCAGACGCCCTTCAATTACTCCTTT
AGGAATGGAGGCGGCTTGGACCAGACGCCACGGCAGCAACGGGGGCGAGA
AGTCTTAGAGGCGGCCCTGTCTCGCCCCGCGACCGCGGCACGCACGAGGC
GTCCAGTACCGTCCGCGACGGTCGAGGGCGGCGGTGGCGGCAGTGACGAC
GACAACGGAGGTGGATCTCCCGCCTCCGGAGTCCTCGCAAGGGTGCTGAA
GAAAGTGGCCCGGTTCCTCCACGCTTTTGCCTCGCGAAGCCAGCGCAGGC
GAGATAAAGATATGCTCATCGACGCGGGCGGCGGCAGGGGTGAGGGAGAA
CCGGGCGGAGCCGGCGATGAACCAGCCGAGCCCGAGCTCTGGTACGGACG
GGATTTCCGGCGACAGCTCAAAACATACTTTAAGCCGCAGCTCGAACGAC
CCTCGCTTTCGCCGCCGCTTGCGCGTGGAGGAGGGCGGACAGACGGCGGC
GACGGCGGCGACGGGGATCGCTACCCAGTCGGGGCCAGGGTGGCGTGCTT
CGCGGGGAAGGGGGCGTGGTACCCGGGCGCCGTGACCGCCTCCCGCGAGA
ACAACACGTACGACGTGCGCTACGACAACGGGGACATCGTCCAGCACGTA
TTCTCGCATATGATTCGCTTCGAGCCGACCCGCACGGACTCGTTCCTCCT
CTGCTGCTACTACGGCCTGGCTCTCGCCGCCGCAGGGGCGTGGCCGCTCG
CGGGCTCCTGGTATTTTACGTCCACGTCCGCGCCCGACACTACCGACGAG
GTCAGCAGCGGTACCGGCACAGCCGCTGCTATCGTAGCCCTTCCCGCACT
GTTAGTGGGCGTTGCCGGTGTCTTTGCAGTAGCGGTTCAGTTCTATGGAA
TCCACGCGGAAATCAGGAGCGCGGGGCTGTGCATCACGGCGAAGTTTGCG
GCAATTTTC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig14:2403366..2405724- >mRNA_P-fluviatile_contig14.2277.1 ID=mRNA_P-fluviatile_contig14.2277.1|Name=mRNA_P-fluviatile_contig14.2277.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3288bp|location=Sequence derived from alignment at P-fluviatile_contig14:2403366..2405724- (Porterinema fluviatile SAG_2381) ATGGACGGTGTGATAGCAATAAAGCGTACGCAGCTGGCGTTGATACTCAT GGGCATGTTTGTGGTAGCGTGCGTGCCTGTGGTGTCGGTGGTCGTCCTCA AGTTCTTCTTCTCGGTCAGGCTTCGATCGCGTCTCCTCAACGACGACTGC AAGCGCTTTACGATGGACGGTGTGATAGCAATAAAGCGTACGCAGCTGGC GTTGATACTCATGGGCATGTTTGTGGTAGCGTGCGTGCCTGTGGTGTCGG TGGTCGTCCTCAAGTTCTTCTTCTCGGTCAGGCTTCGATCGCGTCTCCTC AACGACGACTGCAAGCGCTTTACGGGTGTATTTTTTGTACTGGCGACCAA GGCTATCTTCATCCCGGCCTTATGCGGCGGCGGACGGCTGTGCGAGCGCC GGGTCCATACTCTCATGACCGACGATCACGACGGCGACGCGGGCGGCCGG CAAGGCCACCGCCGAAGAAAAAACCACGCGCACGAGAATGAAACTCATTA TAGAGAAGAGGGCGGCGACGGACGAGAGGAGAGGCCGACAGGTCTACCTC GAGCCCCGCACGGAGGTGGAGCTAGTAAACGTCAGCCGGCGACGCCACCG GGGGTCGAGGGAGAGGGTGGGAGTGGTGGGACGGGTGAGGAGGATAGGCG CGCCGGCAGGGTGGTGAACGACTCGAGCAACAGGACGGTCCTCGATCTAC CTCCTCGGCACTGGATGTGCATCGTGTGTAAGAAGGGTGTATTTTTTGTA CTGGCGACCAAGGCTATCTTCATCCCGGCCTTATGCGGCGGCGGACGGCT GTGCGAGCGCCGGGTCCATACTCTCATGACCGACGATCACGACGGCGACG CGGGCGGCCGGCAAGGCCACCGCCGAAGAAAAAACCACGCGCACGAGAAT GAAACTCATTATAGAGAAGAGGGCGGCGACGGACGAGAGGAGAGGCCGAC AGGTCTACCTCGAGCCCCGCACGGAGGTGGAGCTAGTAAACGTCAGCCGG CGACGCCACCGGGGGTCGAGGGAGAGGGTGGGAGTGGTGGGACGGGTGAG GAGGATAGGCGCGCCGGCAGGGTGGTGAACGACTCGAGCAACAGGACGGT CCTCGATCTACCTCCTCGGCACTGGATGTGCATCGTGTGTAAGAAGGTAA ACGTTTTGCCGGAAGATTGGACCGGGCGGGCCGCAAAGGTCGTCCAGGTC GTCATAAAACGGAAAGAGGTGGACAAGCGAGCCATGTACGGGGCCTTTCG GGCCAAGCCAGGGTTTCCGTCCTGCCGCAAGTGCCAGACGCCCTTCAATT ACTCCTTTAGGAATGGAGGCGGCTTGGACCAGACGCCACGGCAGCAACGG GGGCGAGAAGTCTTAGAGGCGGCCCTGTCTCGCCCCGCGACCGCGGCACG CACGAGGCGTCCAGTACCGTCCGCGACGGTCGAGGGCGGCGGTGGCGGCA GTGACGACGACAACGGAGGTGGATCTCCCGCCTCCGGAGTCCTCGCAAGG GTGCTGAAGAAAGTGGCCCGGTTCCTCCACGCTTTTGCCTCGCGAAGCCA GCGCAGGCGAGATAAAGATATGCTCATCGACGCGGGCGGCGGCAGGGGTG AGGGAGAACCGGGCGGAGCCGGCGATGAACCAGCCGAGCCCGAGCTCTGG TACGGACGGGATTTCCGGCGACAGCTCAAAACATACTTTAAGCCGCAGCT CGAACGACCCTCGCTTTCGCCGCCGCTTGCGCGTGGAGGAGGGCGGACAG ACGGCGGCGACGGCGGCGACGGGGATCGCTACCCAGTCGGGGCCAGGGTG GCGTGCTTCGCGGGGAAGGGGGCGTGGTACCCGGGCGCCGTGACCGCCTC CCGCGAGAACAACACGTACGACGTGCGCTACGACAACGGGGACATCGTCC AGCACGTATTCTCGCATATGATTCGCTTCGAGCCGACCCGCACGGACTCG TTCCTCCTCTGCTGCTACTACGGCCTGGCTCTCGCCGCCGCAGGGGCGTG GCCGCTCGCGGGCTCCTGGTATTTTACGTCCACGTCCGCGCCCGACACTA CCGACGAGGTCAGCAGCGGTACCGGCACAGCCGCTGCTATCGTAGCCCTT CCCGCACTGTTAGTGGGCGTTGCCGGTGTCTTTGCAGTAGCGGTTCAGTT CTATGGAATCCACGCGGAAATCAGGAGCGCGGGGCTGTGCATCACGGCGA AGTTTGCGGCAATTTTCGTAAACGTTTTGCCGGAAGATTGGACCGGGCGG GCCGCAAAGGTCGTCCAGGTCGTCATAAAACGGAAAGAGGTGGACAAGCG AGCCATGTACGGGGCCTTTCGGGCCAAGCCAGGGTTTCCGTCCTGCCGCA AGTGCCAGACGCCCTTCAATTACTCCTTTAGGAATGGAGGCGGCTTGGAC CAGACGCCACGGCAGCAACGGGGGCGAGAAGTCTTAGAGGCGGCCCTGTC TCGCCCCGCGACCGCGGCACGCACGAGGCGTCCAGTACCGTCCGCGACGG TCGAGGGCGGCGGTGGCGGCAGTGACGACGACAACGGAGGTGGATCTCCC GCCTCCGGAGTCCTCGCAAGGGTGCTGAAGAAAGTGGCCCGGTTCCTCCA CGCTTTTGCCTCGCGAAGCCAGCGCAGGCGAGATAAAGATATGCTCATCG ACGCGGGCGGCGGCAGGGGTGAGGGAGAACCGGGCGGAGCCGGCGATGAA CCAGCCGAGCCCGAGCTCTGGTACGGACGGGATTTCCGGCGACAGCTCAA AACATACTTTAAGCCGCAGCTCGAACGACCCTCGCTTTCGCCGCCGCTTG CGCGTGGAGGAGGGCGGACAGACGGCGGCGACGGCGGCGACGGGGATCGC TACCCAGTCGGGGCCAGGGTGGCGTGCTTCGCGGGGAAGGGGGCGTGGTA CCCGGGCGCCGTGACCGCCTCCCGCGAGAACAACACGTACGACGTGCGCT ACGACAACGGGGACATCGTCCAGCACGTATTCTCGCATATGATTCGCTTC GAGCCGACCCGCACGGACTCGTTCCTCCTCTGCTGCTACTACGGCCTGGC TCTCGCCGCCGCAGGGGCGTGGCCGCTCGCGGGCTCCTGGTATTTTACGT CCACGTCCGCGCCCGACACTACCGACGAGGTCAGCAGCGGTACCGGCACA GCCGCTGCTATCGTAGCCCTTCCCGCACTGTTAGTGGGCGTTGCCGGTGT CTTTGCAGTAGCGGTTCAGTTCTATGGAATCCACGCGGAAATCAGGAGCG CGGGGCTGTGCATCACGGCGAAGTTTGCGGCAATTTTC back to top
|