mRNA_P-fluviatile_contig14.2261.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2261.1
Unique NamemRNA_P-fluviatile_contig14.2261.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2261.1 vs. uniprot
Match: A0A6H5KQH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH8_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.380e-54
Identity = 114/186 (61.29%), Postives = 134/186 (72.04%), Query Frame = 1 
Query:   55 ALSLWHQGSRRARQRERALARAISCILRSEERVQREGVVRYLGRWRLAAAAGGRVIAE-------AVVRGQTLSSLLERQRVHRLGEGFRRLARNRAVSVHESGLEHARRDSVSRGLRSLRRTAARILRRRVASAFARWRCFAAEVGRRGDHAIFMSARRRAGAQVLVSATAHREALVLSRAWTIW 591
            ALSLW   S R RQRE AL+RA+SC+LR+E RV R+ +VRYL RWRLAA  GGR +AE       A  RGQT+ S+L R+RVHRL EGFRRLA NR ++V  S  E ARRD VSRGLR L+R AAR  RRRVA AFARW+C  AEVGRR D A+ +SA+RR GA++L S  A REA   SRAW +W
Sbjct:  216 ALSLWRGKSHRGRQREGALSRAVSCVLRAEARVHRDRLVRYLARWRLAAVTGGRALAEEDKAAAEAAFRGQTVLSILRRKRVHRLREGFRRLADNRTLAVLGSREEQARRDDVSRGLRGLKRAAARTTRRRVAGAFARWQCHTAEVGRRSDRALLVSAQRRTGAKMLGSVVARREASARSRAWALW 401
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BLAST of mRNA_P-fluviatile_contig14.2261.1 vs. uniprot
Match: D8LM75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM75_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 9.370e-50
Identity = 106/171 (61.99%), Postives = 125/171 (73.10%), Query Frame = 1 
Query:  100 ERALARAISCILRSEERVQREGVVRYLGRWRLAAAAGGRVIA-------EAVVRGQTLSSLLERQRVHRLGEGFRRLARNRAVSVHESGLEHARRDSVSRGLRSLRRTAARILRRRVASAFARWRCFAAEVGRRGDHAIFMSARRRAGAQVLVSATAHREALVLSRAWTIW 591
            ERAL+RA+SC+LR+E RV R+ +VR L RWRLAA  GGR +A       EA  RGQT+ S+L R+RVHRL EGFRRL  NR +SV  S  E ARRD VSRGLR L+RTAARI RRRVA AFARW+C AAE GRR D A+ +SA+RR GA++L S  A REA   SRAW +W
Sbjct: 1024 ERALSRAVSCVLRAEARVDRDRLVRCLVRWRLAAVTGGRTLADEDKAAAEAAFRGQTVLSILRRKRVHRLWEGFRRLVDNRTLSVLGSKEEQARRDDVSRGLRGLKRTAARITRRRVAGAFARWQCHAAEAGRRSDRALLVSAQRRTGAKMLGSVVARREASARSRAWALW 1194
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQH8_9PHAE3.380e-5461.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM75_ECTSI9.370e-5061.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2269041..2269632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.0913785-CDS-P-fluviatile_contig14:2269040..22696311622815627.0913785-CDS-P-fluviatile_contig14:2269040..2269631Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2269041..2269631 +
1693562539.9099472-CDS-P-fluviatile_contig14:2269040..22696311693562539.9099472-CDS-P-fluviatile_contig14:2269040..2269631Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2269041..2269631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2261.1prot_P-fluviatile_contig14.2261.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2269041..2269631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2261.1

>prot_P-fluviatile_contig14.2261.1 ID=prot_P-fluviatile_contig14.2261.1|Name=mRNA_P-fluviatile_contig14.2261.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=197bp
AAVLAAFARRREGEARRRALSLWHQGSRRARQRERALARAISCILRSEER
VQREGVVRYLGRWRLAAAAGGRVIAEAVVRGQTLSSLLERQRVHRLGEGF
RRLARNRAVSVHESGLEHARRDSVSRGLRSLRRTAARILRRRVASAFARW
RCFAAEVGRRGDHAIFMSARRRAGAQVLVSATAHREALVLSRAWTIW
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mRNA from alignment at P-fluviatile_contig14:2269041..2269632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2261.1 ID=mRNA_P-fluviatile_contig14.2261.1|Name=mRNA_P-fluviatile_contig14.2261.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=592bp|location=Sequence derived from alignment at P-fluviatile_contig14:2269041..2269632+ (Porterinema fluviatile SAG_2381)
GCGGCCGTTCTGGCTGCGTTCGCGCGGCGCAGGGAAGGGGAGGCGAGGAG
GCGGGCGCTGTCCCTGTGGCATCAAGGCTCGCGGCGGGCCAGGCAGCGGG
AGCGCGCGTTGGCGAGGGCGATATCCTGCATACTGCGGTCAGAGGAGCGG
GTCCAACGAGAGGGCGTGGTGCGCTACCTCGGACGGTGGCGGCTGGCGGC
CGCGGCGGGCGGAAGGGTCATTGCAGAAGCGGTCGTTCGCGGGCAGACCC
TTTCGTCGCTCCTGGAGCGCCAGCGCGTGCACCGGCTGGGTGAGGGCTTC
CGCCGCCTGGCTCGCAACCGGGCCGTCTCCGTCCACGAGAGCGGGCTGGA
GCACGCGCGCCGCGATAGCGTCTCTCGGGGGCTTCGCTCCCTGAGACGAA
CGGCGGCGAGGATTTTGCGGAGGCGGGTCGCGAGTGCGTTCGCGCGGTGG
CGGTGCTTTGCGGCCGAGGTCGGCCGGCGGGGGGACCACGCCATCTTTAT
GTCGGCGAGGAGGCGCGCGGGCGCTCAGGTGCTTGTGTCCGCCACCGCTC
ACCGTGAGGCCCTCGTCCTGTCTCGAGCTTGGACAATCTGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:2269041..2269632+

>mRNA_P-fluviatile_contig14.2261.1 ID=mRNA_P-fluviatile_contig14.2261.1|Name=mRNA_P-fluviatile_contig14.2261.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1182bp|location=Sequence derived from alignment at P-fluviatile_contig14:2269041..2269632+ (Porterinema fluviatile SAG_2381)
GCGGCCGTTCTGGCTGCGTTCGCGCGGCGCAGGGAAGGGGAGGCGAGGAG
GCGGGCGCTGTCCCTGTGGCATCAAGGCTCGCGGCGGGCCAGGCAGCGGG
AGCGCGCGTTGGCGAGGGCGATATCCTGCATACTGCGGTCAGAGGAGCGG
GTCCAACGAGAGGGCGTGGTGCGCTACCTCGGACGGTGGCGGCTGGCGGC
CGCGGCGGGCGGAAGGGTCATTGCAGAAGCGGTCGTTCGCGGGCAGACCC
TTTCGTCGCTCCTGGAGCGCCAGCGCGTGCACCGGCTGGGTGAGGGCTTC
CGCCGCCTGGCTCGCAACCGGGCCGTCTCCGTCCACGAGAGCGGGCTGGA
GCACGCGCGCCGCGATAGCGTCTCTCGGGGGCTTCGCTCCCTGAGACGAA
CGGCGGCGAGGATTTTGCGGAGGCGGGTCGCGAGTGCGTTCGCGCGGTGG
CGGTGCTTTGCGGCCGAGGTCGGCCGGCGGGGGGACCACGCCATCTTTAT
GTCGGCGAGGAGGCGCGCGGGCGCTCAGGTGCTTGTGTCCGCCACCGCTC
ACCGTGAGGCCCTCGTCCTGTCTCGAGCTTGGACAATCTGGGCGGCCGTT
CTGGCTGCGTTCGCGCGGCGCAGGGAAGGGGAGGCGAGGAGGCGGGCGCT
GTCCCTGTGGCATCAAGGCTCGCGGCGGGCCAGGCAGCGGGAGCGCGCGT
TGGCGAGGGCGATATCCTGCATACTGCGGTCAGAGGAGCGGGTCCAACGA
GAGGGCGTGGTGCGCTACCTCGGACGGTGGCGGCTGGCGGCCGCGGCGGG
CGGAAGGGTCATTGCAGAAGCGGTCGTTCGCGGGCAGACCCTTTCGTCGC
TCCTGGAGCGCCAGCGCGTGCACCGGCTGGGTGAGGGCTTCCGCCGCCTG
GCTCGCAACCGGGCCGTCTCCGTCCACGAGAGCGGGCTGGAGCACGCGCG
CCGCGATAGCGTCTCTCGGGGGCTTCGCTCCCTGAGACGAACGGCGGCGA
GGATTTTGCGGAGGCGGGTCGCGAGTGCGTTCGCGCGGTGGCGGTGCTTT
GCGGCCGAGGTCGGCCGGCGGGGGGACCACGCCATCTTTATGTCGGCGAG
GAGGCGCGCGGGCGCTCAGGTGCTTGTGTCCGCCACCGCTCACCGTGAGG
CCCTCGTCCTGTCTCGAGCTTGGACAATCTGG
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