mRNA_P-fluviatile_contig14.2237.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE) HSP 1 Score: 523 bits (1346), Expect = 9.160e-174 Identity = 271/367 (73.84%), Postives = 296/367 (80.65%), Query Frame = 3
Query: 33 MDRYLGTTMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGRDQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAAXXXXXCSCWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAVADVGPAAVSAASGVSTNAMKRPFRALYEQRGRLITVEFLERRAARGVTLETLKPVL 1133
MDRY+G+TMFCKECVAESDI+VDPRAGEIICRTCAVVIGERCIDDGAEW+T+A+DS+NGRADPNRCGA SPLLSAKSGMNT+IEGG+D KLTA+LQ+LQGMAVKESASE+ALK DFF KVREFG+RLGLTHAMQEHACLLLRKAEDSGLFK KKAERG AICVAVTLLTCR WRR QTMKE++ +F+V LKALNKAVKKL NLEIE+ PSLRGEHHIP LCDKLGLP FV+VAA+HAAQQAS+WDLVDGM PSAVAAA CSCWN E DV PAAVS A G + AMKRPFRA+YEQRGRL TVEFLERRAA+ VTLETLKP+L
Sbjct: 1 MDRYMGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCGAAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKLSNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGDGVVDRRSKKARKTQQQQQAAV-----------EGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPIL 356
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A7J7B4T9_9COLE (Transcription initiation factor IIB n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7B4T9_9COLE) HSP 1 Score: 114 bits (286), Expect = 7.010e-23 Identity = 88/271 (32.47%), Postives = 134/271 (49.45%), Query Frame = 3
Query: 15 SHTPAKMDRYLGTTMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGR-----DQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
SH P+ + T C ++ + D RAG+ IC C +V+G+R ID G+EWRTF+++ SN DP+R G +PLLS S + TMI GR D+ AR Q + M S+S++AL + F ++ R+ L + + A L ++ D + K +AI A + CR +T KE+ + + K + + K L LE G+ + + C LGLP V AA H A++A + D+V G P +VAAA
Sbjct: 177 SHMPSWISNQYDTNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSN--VDPSRVGGPENPLLSG-SDLTTMIGPGRGDASFDEFGVARYQNRRTM----SSSDRAL-INAFKEINSMADRINLPRTIVDRANNLFKQVHDG---RNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPNMVQRAATHIARKAVELDIVPGRSPISVAAA 435
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: TF2B_DICDI (Transcription initiation factor IIB n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TF2B_DICDI) HSP 1 Score: 110 bits (276), Expect = 1.170e-22 Identity = 76/266 (28.57%), Postives = 126/266 (47.37%), Query Frame = 3
Query: 21 TPAKMDRYLGTTMFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGRDQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
TP + ++C C + + DI D G++ICR C VV+G+R +D+ +EWRTF++ S G ADPNR G ++PLL + T+ +G +D + L RLQ + + L F ++ + L +Q+ A L R +D K K + + A + CR ++T KE+A + +VP K +++ K + + ++ E + C L LP V A+H ++ A +V G P +V AA
Sbjct: 9 TPQNKKQSFYNKLWCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTG-ADPNRVGGPINPLLRDSALSTTVGKGSKD---SGTLTRLQNKSALGTGDRNLLAA--FKEIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAA 265
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: F0ZB51_DICPU (Uncharacterized protein gtf2b n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB51_DICPU) HSP 1 Score: 110 bits (276), Expect = 1.950e-22 Identity = 76/254 (29.92%), Postives = 125/254 (49.21%), Query Frame = 3
Query: 57 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGRDQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
++CK C V + DI D G++ICR C VV+G+R +D+ +EWRTF++ S G ADPNR G ++PLL + T+ +G RD ++ L RLQ + + L F ++ + L +Q+ A L R +D K K + + A + CR ++T KE+A + +VP K +++ K + + ++ E + C L LP V ++H ++ A +V G P +V AA
Sbjct: 46 LWCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTG-ADPNRVGGPINPLLRDSALSTTIGKGSRD---SSSLNRLQNKSALGTGDRNLLAA--FKEIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMDMGIVAGKSPISVTAA 290
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A6P7VZH4_IXOSC (Transcription initiation factor IIB n=24 Tax=Ixodoidea TaxID=297308 RepID=A0A6P7VZH4_IXOSC) HSP 1 Score: 109 bits (272), Expect = 3.230e-22 Identity = 85/257 (33.07%), Postives = 132/257 (51.36%), Query Frame = 3
Query: 57 MFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGR-----DQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
+FC + ++ + D RAG++IC C +V+G+R +D G EWR F ++ SN DP R GA +PLL+ S + TMI G D+ TA+ Q + M S+S++AL + F ++ R+ LT + + + LL ++ D K K +AI A + CR +T KE+ + V K + + K L LE G+ + + C LGLP+ V AA H A++A + D+V G P +VAAA
Sbjct: 12 VFCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNN--DPARVGASENPLLNG-SDLATMIGKGTGDASFDESGTAKYQNRKTM----SSSDRAL-VNAFREISNMADRINLTKTIVDRSNLLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPSSVQKAATHIARKAVELDVVSGRSPISVAAA 255
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A7R9L5G7_9ACAR (Transcription initiation factor IIB n=2 Tax=Oppiidae TaxID=229795 RepID=A0A7R9L5G7_9ACAR) HSP 1 Score: 108 bits (269), Expect = 6.840e-22 Identity = 84/255 (32.94%), Postives = 132/255 (51.76%), Query Frame = 3
Query: 69 ECVAESDIFV--DPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGR-----DQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
+C + D+ + D RAG++IC C +V+G+R +D G+EWRTF+++ SN ADP+R GA +PLLS S ++TMI D+ TA+ Q + M S+S++AL + F ++ R+ L + + A LL ++ D + K +AI A + CR +T KE+ + V K + + K L LE G+ + + C LGL V A H A++A + D+V G P +VAAA
Sbjct: 6 QCPSHPDVHLIEDYRAGDLICPECGLVVGDRVVDVGSEWRTFSNEKSN--ADPSRVGAAENPLLS--SDLSTMIGRSNSDVAFDESGTAKYQNRKHM----SSSDRAL-ANAFREISNMSDRINLPKTIVDRANLLFKQVHDG---RTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCTNLGLTTAVQRGATHIARKAVELDVVPGRSPISVAAA 247
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: T1KYS9_TETUR (Transcription initiation factor IIB n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KYS9_TETUR) HSP 1 Score: 106 bits (265), Expect = 2.070e-21 Identity = 81/269 (30.11%), Postives = 136/269 (50.56%), Query Frame = 3
Query: 42 YLGTTMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMI------EGGRDQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAAXXXXXC 827
Y + C+E ++ + D RAG++IC C +V+G+R ID G+EWRTF+++ +N ADP+R GA +PL+ + ++T+I G K +++ Q S+SE++L F ++ + ++ L + E A LL ++ DS + K +AI A ++CR +T KE+ + V K + + K L LE G+ + + C LGL + + AA H A++A + D+V G P +VAAA C
Sbjct: 3 YRKAKIGCRE-HPDATLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAN--ADPSRVGAAENPLME-NNDLSTIIARAEPNSSGEGFKYSSKKQM--------SSSERSLLNGF-KEISDMADKINLAKTIVERANLLFKQVHDS---RTTKGRSNDAIASACLYISCRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETNVDTITTGDFMV-RFCSNLGLSSAIQKAATHIARKAVELDIVPGRSPISVAAAAIYMAC 254
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A024GL73_9STRA (TFIIB-type domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GL73_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.110e-21 Identity = 70/252 (27.78%), Postives = 124/252 (49.21%), Query Frame = 3
Query: 63 CKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGGRDQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKA---VKKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
C +C ++ DI D AG+++CR C +V+GER +DD EWRTF++D G A ++ + + T++ K+ Q + + + ++ K + ++RE L L + E A + ++AE G+ + E++ AV + CR A+T+KEL V K + K+ +KK N + ++ + +++ + C +LGLPA V A A++A L DG P+A+AA+
Sbjct: 8 CVDCGSD-DIVTDYGAGDVVCRNCGIVLGERIVDDTPEWRTFSNDDRGGDAASKSRVGQLEDQGIENATLTTILVDSTLDKINGNTQTTRLPKLNKESANIRRKQNMTNRIREISETLSLPKIIVECAMQVYQEAERKGILI--RGPEKESVAAAVVFIACRQAGHARTLKELEGASGVMKKKIGKSFLILKKQLNFDFQQATTT---NYVERFCSRLGLPAKTQVIAHDVAKKAQTLGLTDGKSPTALAAS 253
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A8B6EZI2_MYTGA (Transcription initiation factor IIB n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EZI2_MYTGA) HSP 1 Score: 105 bits (263), Expect = 5.150e-21 Identity = 79/253 (31.23%), Postives = 123/253 (48.62%), Query Frame = 3
Query: 84 SDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMI----------EGGRDQKLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
+++ D AG++IC C +V+G+R +D G EWRTF+++ S G DP+R GA +PLL ++TMI E G+ R S++++AL + F ++ G RL L + + A L ++ D K K +AI A + CR +T KE+ + + K + + K L NLE G+ + + C LGLP V AA H A++A + DLV G P +VAA+
Sbjct: 21 ANLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNEKSTGNKDPSRVGAAENPLLDG-GDLSTMIQVDPTSMSYDEHGKPMYKNRRTM---------SSADRAL-INAFREIGNMGDRLNLPKMIADRANNLFKQVNDG---KALKGRSNDAIAAACMYIACRQEGVPRTFKEICAVSKISKKEIGRVFKLILKNLETNVELITTGDF-MSRFCSNLGLPTSVQKAATHIARKAVEMDLVAGRSPISVAAS 258
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Match: A0A0B6ZVU2_9EUPU (Transcription initiation factor IIB (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZVU2_9EUPU) HSP 1 Score: 105 bits (263), Expect = 5.150e-21 Identity = 86/270 (31.85%), Postives = 134/270 (49.63%), Query Frame = 3
Query: 27 AKMDRYLGTTMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRADPNRCGAEVSPLLSAKSGMNTMIEGG------RDQ--KLTARLQRLQGMAVKESASEKALKTDFFAKVREFGHRLGLTHAMQEHACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRHWRRAQTMKELANIFSVPLKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVAVAAKHAAQQASKWDLVDGMMPSAVAAA 809
A R+L +FC+E ++++ D AG++IC C +V+G+R ID G+EWRTF+++ + D +R GA +PL M+TMI G RD+ K + +R Q S+S++AL T + + + RL L + + A L ++ DS K K +AI A + CR +T KE+ + + K + + K L NLE G+ + + C LGL + AA H A++A DLV G P +VAAA
Sbjct: 3 ASTSRHLAAQVFCRE-HPDAELVEDYHAGDMICPVCGLVVGDRVIDVGSEWRTFSNEKDS--KDNSRVGAAENPLFEG-GDMSTMIAMGTGNDSLRDEFGKPMYKNRRTQ-----MSSSDRALHTAY-RDIGQMADRLNLPKMLVDRASTLFKQVHDS---KLLKGRSNDAISSACMYIACRQDGVPRTFKEICAVSKISKKEIGRVFKLILKNLETNVNLITTGDF-MSRFCSNLGLSPTIQKAATHIARKAVDMDLVPGRSPISVAAA 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig14.2237.1 >prot_P-fluviatile_contig14.2237.1 ID=prot_P-fluviatile_contig14.2237.1|Name=mRNA_P-fluviatile_contig14.2237.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=369bp MDRYLGTTMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRback to top mRNA from alignment at P-fluviatile_contig14:2040833..2045840+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig14.2237.1 ID=mRNA_P-fluviatile_contig14.2237.1|Name=mRNA_P-fluviatile_contig14.2237.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5008bp|location=Sequence derived from alignment at P-fluviatile_contig14:2040833..2045840+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig14:2040833..2045840+ >mRNA_P-fluviatile_contig14.2237.1 ID=mRNA_P-fluviatile_contig14.2237.1|Name=mRNA_P-fluviatile_contig14.2237.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2214bp|location=Sequence derived from alignment at P-fluviatile_contig14:2040833..2045840+ (Porterinema fluviatile SAG_2381)back to top |