mRNA_P-fluviatile_contig14.2232.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2232.1
Unique NamemRNA_P-fluviatile_contig14.2232.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2232.1 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.310e-18
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = -3 
Query: 1015 FEHCTHAKQVRFSFGDWDDEG---ERRELIPEEPRSYSKRTQKGIDSWHFPLEGSEDWLCARW 1194
            F+      Q RF FGDW  EG   + RE+I EEPRSYSKRTQKG+DSWH PLE S DWLCARW
Sbjct:   47 FQRWKERHQARFYFGDWKGEGGDDDAREVITEEPRSYSKRTQKGVDSWHVPLERSRDWLCARW 109
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BLAST of mRNA_P-fluviatile_contig14.2232.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.980e-15
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = -3 
Query: 1015 FEHCTHAKQVRFSFGDWDDEG---ERRELIPEEPRSYSKRTQKGIDSWHFPLEGSEDWLCARW 1194
            F+      Q RF FGDW  EG   + RE+I EEPRSYSKRTQKG+DSWH PLE S DWLCARW
Sbjct:  772 FQRWKERHQARFYFGDWKGEGGDDDEREVITEEPRSYSKRTQKGVDSWHVPLERSRDWLCARW 834
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNK8_ECTSI4.310e-1865.08PRORP domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LB75_9PHAE1.980e-1565.08Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1998516..2000026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1511
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2232.1prot_P-fluviatile_contig14.2232.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1998542..1999381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9549537-UTR-P-fluviatile_contig14:1998515..19985411622815590.9549537-UTR-P-fluviatile_contig14:1998515..1998541Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1998516..1998541 +
1693562368.0210807-UTR-P-fluviatile_contig14:1998515..19985411693562368.0210807-UTR-P-fluviatile_contig14:1998515..1998541Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1998516..1998541 +
1622815590.9762692-UTR-P-fluviatile_contig14:1999381..20000261622815590.9762692-UTR-P-fluviatile_contig14:1999381..2000026Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1999382..2000026 +
1693562368.043238-UTR-P-fluviatile_contig14:1999381..20000261693562368.043238-UTR-P-fluviatile_contig14:1999381..2000026Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1999382..2000026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9659324-CDS-P-fluviatile_contig14:1998541..19993811622815590.9659324-CDS-P-fluviatile_contig14:1998541..1999381Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1998542..1999381 +
1693562368.0333521-CDS-P-fluviatile_contig14:1998541..19993811693562368.0333521-CDS-P-fluviatile_contig14:1998541..1999381Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1998542..1999381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2232.1

>prot_P-fluviatile_contig14.2232.1 ID=prot_P-fluviatile_contig14.2232.1|Name=mRNA_P-fluviatile_contig14.2232.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=280bp
MHRCHVLEYNDVRVVCDSCNQKRARKYANMILLRSSVTARCVLPPTAALR
SLLLYRQALQYSDPGQGNARLRYQNPKTPAPHNTRSWPFPFFIVHESKHF
RRNRSSASTSRPSPSRRTWVAHPSASSGHPCSASRPIAVHGPLSSNHKSN
EKQHSIDFKPIQLPPCGNVDVQNLRRPATRHSTAAYHKWGRTSAQNSTKK
RQTVSKHAKRDWLGESAKQVEPNANHLPSPASDAYSLATTPSQLEHTKES
SSDVCRERSTEDQQLAVHCLGNMHTSTSV*
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mRNA from alignment at P-fluviatile_contig14:1998516..2000026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2232.1 ID=mRNA_P-fluviatile_contig14.2232.1|Name=mRNA_P-fluviatile_contig14.2232.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1511bp|location=Sequence derived from alignment at P-fluviatile_contig14:1998516..2000026+ (Porterinema fluviatile SAG_2381)
GCGCTTCGTTTCTGTTACGGAAAATAATGCACCGTTGCCATGTTCTCGAG
TATAACGACGTCCGAGTGGTGTGTGATTCCTGCAACCAAAAAAGGGCACG
AAAATATGCAAACATGATTCTGCTTCGTTCTAGTGTCACTGCTCGCTGCG
TCCTGCCACCGACAGCCGCTCTACGGTCCTTGCTCCTCTACAGACAAGCC
TTGCAATACTCAGACCCAGGACAAGGCAATGCCAGACTACGTTATCAAAA
CCCCAAGACGCCTGCCCCCCATAACACCAGAAGCTGGCCCTTCCCTTTCT
TCATCGTTCATGAAAGCAAACACTTTCGTCGAAACCGGTCATCAGCTTCG
ACGAGCCGGCCGTCGCCTTCGAGGCGTACGTGGGTAGCACACCCAAGCGC
GAGCAGCGGGCACCCCTGCTCGGCCTCCCGACCCATCGCCGTGCACGGCC
CGTTATCTTCCAACCACAAATCGAATGAAAAACAACACAGTATCGACTTT
AAACCAATCCAACTTCCACCGTGTGGAAACGTCGACGTCCAAAATTTGCG
CCGCCCAGCAACACGGCACAGCACGGCAGCCTACCACAAATGGGGCCGAA
CATCAGCACAGAACAGCACGAAAAAACGACAAACAGTGAGCAAGCACGCG
AAACGGGACTGGCTTGGCGAGTCGGCCAAACAGGTCGAGCCGAACGCAAA
CCACTTGCCGAGCCCAGCCTCCGATGCTTATAGTCTTGCAACAACCCCGT
CCCAACTTGAGCACACCAAGGAATCGTCATCAGACGTTTGTAGAGAGCGC
TCAACCGAAGACCAGCAACTCGCCGTGCATTGCCTTGGAAACATGCACAC
TTCTACCAGCGTCTAGACCCCATCCACGTCAGCTTTGCCGTGCGGTCTGT
CGAACACTGGCAAGCGGCTCACGCGAAAAGTACCGAATATTTCCACGAGA
AAAAATGCAAGAAGTGTGTAGGTGGGGGAGGGGAGAGAAAGATGGGTGGC
GGTTATCGCCGCAGCCACCTCGCACACAGCCAATCCTCCGAACCCTCGAG
CGGGAAGTGCCACGAGTCTATGCCCTTCTGCGTCCGCTTCGAGTATGACC
GGGGCTCCTCCGGGATGAGCTCTCGTCTTTCTCCCTCGTCGTCCCAATCG
CCGAAACTGAAACGCACCTGTTTCGCGTGTGTGCAGTGCTCAAAAGTTAG
GGTCAGGTTCAGAGTTAAGGTGGTGATGGTGGTGGTTGGTGAGCCGTCGA
TACCGGCAAGGGTGCGAGACAGGCGACAAGACGACGTCAGAAAACGACGA
GAAAGGAGAATAAAAAGCGAAAGTGCAAGACGTGATAGCCGACGAGAATA
CAAGAAGAGCAAATTTGTGACCACCGGTGGCAAACAACCAATGAATGGGA
CGGAGCAGGAAGCGGAGGGGTGTTTGTGAGCTGTTGAGGAGCTTGGAAAG
GGAGGGGGGCCCGGGCCGGCTGGAGGGCGAATATACCCAACAACATGCAC
AGCGGTGTCAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1998516..2000026+

>mRNA_P-fluviatile_contig14.2232.1 ID=mRNA_P-fluviatile_contig14.2232.1|Name=mRNA_P-fluviatile_contig14.2232.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1680bp|location=Sequence derived from alignment at P-fluviatile_contig14:1998516..2000026+ (Porterinema fluviatile SAG_2381)
ATGCACCGTTGCCATGTTCTCGAGTATAACGACGTCCGAGTGGTGTGTGA
TTCCTGCAACCAAAAAAGGGCACGAAAATATGCAAACATGATTCTGCTTC
GTTCTAGTGTCACTGCTCGCTGCGTCCTGCCACCGACAGCCGCTCTACGG
TCCTTGCTCCTCTACAGACAAGCCTTGCAATACTCAGACCCAGGACAAGG
CAATGCCAGACTACGTTATCAAAACCCCAAGACGCCTGCCCCCCATAACA
CCAGAAGCTGGCCCTTCCCTTTCTTCATCGTTCATGAAAGCAAACACTTT
CGTCGAAACCGGTCATCAGCTTCGACGAGCCGGCCGTCGCCTTCGAGGCG
TACGTGGGTAGCACACCCAAGCGCGAGCAGCGGGCACCCCTGCTCGGCCT
CCCGACCCATCGCCGTGCACGGCCCGTTATCTTCCAACCACAAATCGAAT
GAAAAACAACACAGTATCGACTTTAAACCAATCCAACTTCCACCGTGTGG
AAACGTCGACGTCCAAAATTTGCGCCGCCCAGCAACACGGCACAGCACGG
CAGCCTACCACAAATGGGGCCGAACATCAGCACAGAACAGCACGAAAAAA
CGACAAACAGTGAGCAAGCACGCGAAACGGGACTGGCTTGGCGAGTCGGC
CAAACAGGTCGAGCCGAACGCAAACCACTTGCCGAGCCCAGCCTCCGATG
CTTATAGTCTTGCAACAACCCCGTCCCAACTTGAGCACACCAAGGAATCG
TCATCAGACGTTTGTAGAGAGCGCTCAACCGAAGACCAGCAACTCGCCGT
GCATTGCCTTGGAAACATGCACACTTCTACCAGCGTCTAGATGCACCGTT
GCCATGTTCTCGAGTATAACGACGTCCGAGTGGTGTGTGATTCCTGCAAC
CAAAAAAGGGCACGAAAATATGCAAACATGATTCTGCTTCGTTCTAGTGT
CACTGCTCGCTGCGTCCTGCCACCGACAGCCGCTCTACGGTCCTTGCTCC
TCTACAGACAAGCCTTGCAATACTCAGACCCAGGACAAGGCAATGCCAGA
CTACGTTATCAAAACCCCAAGACGCCTGCCCCCCATAACACCAGAAGCTG
GCCCTTCCCTTTCTTCATCGTTCATGAAAGCAAACACTTTCGTCGAAACC
GGTCATCAGCTTCGACGAGCCGGCCGTCGCCTTCGAGGCGTACGTGGGTA
GCACACCCAAGCGCGAGCAGCGGGCACCCCTGCTCGGCCTCCCGACCCAT
CGCCGTGCACGGCCCGTTATCTTCCAACCACAAATCGAATGAAAAACAAC
ACAGTATCGACTTTAAACCAATCCAACTTCCACCGTGTGGAAACGTCGAC
GTCCAAAATTTGCGCCGCCCAGCAACACGGCACAGCACGGCAGCCTACCA
CAAATGGGGCCGAACATCAGCACAGAACAGCACGAAAAAACGACAAACAG
TGAGCAAGCACGCGAAACGGGACTGGCTTGGCGAGTCGGCCAAACAGGTC
GAGCCGAACGCAAACCACTTGCCGAGCCCAGCCTCCGATGCTTATAGTCT
TGCAACAACCCCGTCCCAACTTGAGCACACCAAGGAATCGTCATCAGACG
TTTGTAGAGAGCGCTCAACCGAAGACCAGCAACTCGCCGTGCATTGCCTT
GGAAACATGCACACTTCTACCAGCGTCTAG
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