mRNA_P-fluviatile_contig14.2220.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2220.1
Unique NamemRNA_P-fluviatile_contig14.2220.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1857272..1857864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size593
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2220.1prot_P-fluviatile_contig14.2220.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1857343..1857753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.8965914-UTR-P-fluviatile_contig14:1857271..18573421622815590.8965914-UTR-P-fluviatile_contig14:1857271..1857342Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1857272..1857342 +
1693562367.9861176-UTR-P-fluviatile_contig14:1857271..18573421693562367.9861176-UTR-P-fluviatile_contig14:1857271..1857342Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1857272..1857342 +
1622815590.92031-UTR-P-fluviatile_contig14:1857753..18578641622815590.92031-UTR-P-fluviatile_contig14:1857753..1857864Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1857754..1857864 +
1693562368.0036187-UTR-P-fluviatile_contig14:1857753..18578641693562368.0036187-UTR-P-fluviatile_contig14:1857753..1857864Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1857754..1857864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9093711-CDS-P-fluviatile_contig14:1857342..18577531622815590.9093711-CDS-P-fluviatile_contig14:1857342..1857753Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1857343..1857753 +
1693562367.994886-CDS-P-fluviatile_contig14:1857342..18577531693562367.994886-CDS-P-fluviatile_contig14:1857342..1857753Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1857343..1857753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2220.1

>prot_P-fluviatile_contig14.2220.1 ID=prot_P-fluviatile_contig14.2220.1|Name=mRNA_P-fluviatile_contig14.2220.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp
MCECRWSGFAHLEEDWIGSEHIAWFYEASLAIGGVVEHVHAGQIYWNTRS
TKDSQLRQAMRNRLKLAAHIQSINTAVLVLSLCGLDLHCLQLPAQPSLTI
MCARAPRQLPSFLPAARRLASPRQMETNNEFHAKAG*
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mRNA from alignment at P-fluviatile_contig14:1857272..1857864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2220.1 ID=mRNA_P-fluviatile_contig14.2220.1|Name=mRNA_P-fluviatile_contig14.2220.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=593bp|location=Sequence derived from alignment at P-fluviatile_contig14:1857272..1857864+ (Porterinema fluviatile SAG_2381)
TGGGAAGGGGGGGGCTTCGGCATAGGGGGCGAGTGTGGTTGCAGGGGTCG
GCTGGATTTTGCGATGGGTGTATGTGCGAATGTAGGTGGTCAGGATTTGC
ACACTTAGAGGAAGACTGGATCGGCTCAGAACATATTGCGTGGTTCTACG
AGGCTAGTCTTGCGATTGGGGGGGTCGTCGAGCATGTGCACGCTGGACAA
ATATATTGGAACACACGCTCCACAAAAGATTCGCAACTCAGACAAGCGAT
GAGAAATCGCCTGAAACTCGCAGCACATATACAAAGTATCAATACCGCTG
TACTGGTTCTCTCCCTGTGCGGCCTCGATCTACATTGTCTGCAACTGCCG
GCGCAACCTTCTTTAACCATTATGTGTGCGCGTGCCCCGCGCCAACTCCC
AAGCTTCCTTCCCGCTGCTCGTCGTCTGGCCTCGCCCCGACAAATGGAAA
CAAACAATGAATTTCATGCTAAAGCCGGATGACAACAAACCAAATTAGGC
TGGACGCGCAACTCACATGAGATCCCATGACCCCCCCCACACACGCTGTT
TTGCAAACCTGTGCTGCAGCCGCCTCCCGGCTGCCAGAAGCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1857272..1857864+

>mRNA_P-fluviatile_contig14.2220.1 ID=mRNA_P-fluviatile_contig14.2220.1|Name=mRNA_P-fluviatile_contig14.2220.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig14:1857272..1857864+ (Porterinema fluviatile SAG_2381)
ATGTGCGAATGTAGGTGGTCAGGATTTGCACACTTAGAGGAAGACTGGAT
CGGCTCAGAACATATTGCGTGGTTCTACGAGGCTAGTCTTGCGATTGGGG
GGGTCGTCGAGCATGTGCACGCTGGACAAATATATTGGAACACACGCTCC
ACAAAAGATTCGCAACTCAGACAAGCGATGAGAAATCGCCTGAAACTCGC
AGCACATATACAAAGTATCAATACCGCTGTACTGGTTCTCTCCCTGTGCG
GCCTCGATCTACATTGTCTGCAACTGCCGGCGCAACCTTCTTTAACCATT
ATGTGTGCGCGTGCCCCGCGCCAACTCCCAAGCTTCCTTCCCGCTGCTCG
TCGTCTGGCCTCGCCCCGACAAATGGAAACAAACAATGAATTTCATGCTA
AAGCCGGATGAATGTGCGAATGTAGGTGGTCAGGATTTGCACACTTAGAG
GAAGACTGGATCGGCTCAGAACATATTGCGTGGTTCTACGAGGCTAGTCT
TGCGATTGGGGGGGTCGTCGAGCATGTGCACGCTGGACAAATATATTGGA
ACACACGCTCCACAAAAGATTCGCAACTCAGACAAGCGATGAGAAATCGC
CTGAAACTCGCAGCACATATACAAAGTATCAATACCGCTGTACTGGTTCT
CTCCCTGTGCGGCCTCGATCTACATTGTCTGCAACTGCCGGCGCAACCTT
CTTTAACCATTATGTGTGCGCGTGCCCCGCGCCAACTCCCAAGCTTCCTT
CCCGCTGCTCGTCGTCTGGCCTCGCCCCGACAAATGGAAACAAACAATGA
ATTTCATGCTAAAGCCGGATGA
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