mRNA_P-fluviatile_contig14.2201.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2201.1
Unique NamemRNA_P-fluviatile_contig14.2201.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2201.1 vs. uniprot
Match: D7FNL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL7_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 2.150e-109
Identity = 194/344 (56.40%), Postives = 232/344 (67.44%), Query Frame = 1 
Query:    1 MASRKHQR--RILAVKVVLASTLTRSCVSFAPPSPFVANRVGGIAAIFC---VKGCRPRGCWSPGSITSPLRAA----DSDLDDGGAHGNESFEHLVGIEEFRAEKSKRDPGQ-------------ATGAXXXXXXXXXLGLEGAIFPSEAFPGSPGSDDITLQNIPLEDGQPQEMVGFWKLYGSTANGEDLSGRVILRADGQVVGGPTVRFTPGVKWSDPAGLQPVGGKWSVYSSKRTGRARLRFTIVLSFQKEQQLELDGVVLMVDGSMGEMAEHTMEAE--ERAPKSASGCGEPKPQVFGGVRKRSGEATDPDEGDFSMMKIQAGEDKLVASVGSQQRRFW 960
            MA+++HQR  +  A+  ++A +LT S +SFAPP    A   G      C        P  C S  S T+P  AA    D D D   A+ ++  + LVGI+EFRA K++RD  +             A            LGLEGAIFP++AFPGSP + +ITLQ+  LE+GQP+ MVGFWKLYGST +GEDLSGRVILRADGQVVGGPTVR TPGV+WSDP GLQPVGG+W+VYS KRT RARLRFTIVLSF+K+QQLE+DG VLMVDG MGEM     E    E A ++  G GEPKPQVFGGV KR+GE  D  EGDF MMK+ AGEDKLVA+VGSQQ+RFW
Sbjct:    2 MANQRHQRHRQCPALAFLVAMSLTGSSMSFAPP--LAARGSGAARPSLCGVTSSSRSPLRCVSNTSPTAPRAAAEAAGDQDDDRSSANDDDGIDELVGIDEFRANKAERDRLEEQVEDGRRAVVEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPEAMVGFWKLYGSTGDGEDLSGRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTNRARLRFTIVLSFEKKQQLEMDGTVLMVDG-MGEMGGLLSEGNDGEGAGEAELG-GEPKPQVFGGVFKRNGEVMDDGEGDFGMMKVPAGEDKLVATVGSQQKRFW 341
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BLAST of mRNA_P-fluviatile_contig14.2201.1 vs. uniprot
Match: A0A835YWQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.780e-25
Identity = 77/214 (35.98%), Postives = 105/214 (49.07%), Query Frame = 1 
Query:  358 LEGAIFPSEAFPGSP--GSDDITLQNIPLEDGQPQEMVGFWKLYGST-ANGEDLSGRVILRADGQVVGGPTVRFTPGVKWSDPAGLQPVGGKWSVYSSKRTGRA---RLRFTIVLSFQKEQQLELDGVVLMV---DGSMGEMAEHTMEAEERAPKSASGCGEPKPQVFGGVRKRS---GEATDPDEGDFSMMKIQAGEDKLVASVGSQ-QRRFW 960
            L+  +FPS +       G     L N  L  G P+ MVGFW+LY    A   D + R++LR DGQVVGGP V  T    WSDPAG++  GG+W+VY     G+A   RLR T+  + Q+   L LDG++L     D + G M +                    P+V G V +R+   G       G+FSM+K+     KL A VG+Q  +R W
Sbjct:   38 LQDGVFPSASGSAQQQQGGTLKILGNDQLHQGNPESMVGFWQLYADCDAARVDPADRLVLRPDGQVVGGPVVNPTAVTSWSDPAGVRACGGRWAVYEDTAEGKAGISRLRMTLFANPQRTAALVLDGIILCASEYDRNKGGMVDV-------------------PRVLGDVSQRAIRDGRQQHRQSGEFSMLKVTTDHVKLKAEVGNQGPQRLW 232
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BLAST of mRNA_P-fluviatile_contig14.2201.1 vs. uniprot
Match: A0A7S1DTS4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DTS4_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 8.350e-6
Identity = 56/178 (31.46%), Postives = 81/178 (45.51%), Query Frame = 1 
Query:  457 EMVGFWKLYGSTANGEDLSGRVILRADGQVVGGPTVRF---TPGVKWSDPAGLQPVGGKWSVYSSKRTGRARLRFTIVLSFQKEQQLELDGVVLMVDGSMGEMAEHTMEAEERAPKSASGCGEPKPQVFGGVRKR--SGEAT-----DP-DEGDFSMMKIQAGEDKLVASVGSQQRRF 957
            ++VGFW+L          +  ++LRA+GQV GGP VR    T  + W+  A  +P GG W        G+  +   ++L  +  +Q    GV     GS+  ++   +E E  +P    G  E + +VFG +     SGE       DP   GDFSM+KI     KLV  V    R F
Sbjct:   89 DLVGFWQLMDDGERTFTPADNLVLRANGQVSGGPPVRGYADTDDISWA--AEQRPAGGVWRDEGPDEAGKRMVSVLLMLPPRSAEQ-RASGVRF---GSL--LSGRVLEFEAPSP---GGGKETQMRVFGNITSGIVSGEGMERRIDDPVPAGDFSMVKISTKRQKLVQMVKPYSRPF 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNL7_ECTSI2.150e-10956.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWQ6_9STRA3.780e-2535.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1DTS4_HEMAN8.350e-631.46Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1767802..1769856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005010.1
Exons3
Model size963
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2201.1prot_P-fluviatile_contig14.2201.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1767802..1769856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.8725746-CDS-P-fluviatile_contig14:1767801..17682781622815618.8725746-CDS-P-fluviatile_contig14:1767801..1768278Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1767802..1768278 +
1693562470.3441486-CDS-P-fluviatile_contig14:1767801..17682781693562470.3441486-CDS-P-fluviatile_contig14:1767801..1768278Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1767802..1768278 +
1622815618.884661-CDS-P-fluviatile_contig14:1769016..17690821622815618.884661-CDS-P-fluviatile_contig14:1769016..1769082Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1769017..1769082 +
1693562470.3573632-CDS-P-fluviatile_contig14:1769016..17690821693562470.3573632-CDS-P-fluviatile_contig14:1769016..1769082Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1769017..1769082 +
1622815618.8962715-CDS-P-fluviatile_contig14:1769436..17698561622815618.8962715-CDS-P-fluviatile_contig14:1769436..1769856Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1769437..1769856 +
1693562470.3653119-CDS-P-fluviatile_contig14:1769436..17698561693562470.3653119-CDS-P-fluviatile_contig14:1769436..1769856Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1769437..1769856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2201.1

>prot_P-fluviatile_contig14.2201.1 ID=prot_P-fluviatile_contig14.2201.1|Name=mRNA_P-fluviatile_contig14.2201.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=321bp
MASRKHQRRILAVKVVLASTLTRSCVSFAPPSPFVANRVGGIAAIFCVKG
CRPRGCWSPGSITSPLRAADSDLDDGGAHGNESFEHLVGIEEFRAEKSKR
DPGQATGAASGVGKGVGLGLEGAIFPSEAFPGSPGSDDITLQNIPLEDGQ
PQEMVGFWKLYGSTANGEDLSGRVILRADGQVVGGPTVRFTPGVKWSDPA
GLQPVGGKWSVYSSKRTGRARLRFTIVLSFQKEQQLELDGVVLMVDGSMG
EMAEHTMEAEERAPKSASGCGEPKPQVFGGVRKRSGEATDPDEGDFSMMK
IQAGEDKLVASVGSQQRRFW*
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mRNA from alignment at P-fluviatile_contig14:1767802..1769856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2201.1 ID=mRNA_P-fluviatile_contig14.2201.1|Name=mRNA_P-fluviatile_contig14.2201.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2055bp|location=Sequence derived from alignment at P-fluviatile_contig14:1767802..1769856+ (Porterinema fluviatile SAG_2381)
ATGGCGAGTCGCAAGCACCAGCGACGAATCCTCGCGGTTAAGGTTGTGCT
TGCATCGACTTTGACCCGCTCGTGCGTGTCGTTTGCCCCACCATCACCTT
TCGTTGCAAACCGAGTTGGTGGGATTGCGGCGATATTTTGTGTAAAGGGC
TGCAGACCGAGAGGTTGTTGGTCACCGGGCTCCATCACATCACCGCTGAG
AGCGGCAGACTCAGATCTCGACGATGGTGGTGCTCATGGAAACGAAAGCT
TTGAGCATCTTGTGGGTATTGAAGAGTTCAGGGCAGAAAAGTCGAAGAGG
GACCCCGGACAAGCGACAGGCGCAGCATCTGGCGTTGGGAAGGGTGTGGG
CTTAGGATTGGAGGGCGCTATTTTCCCAAGCGAGGCGTTCCCTGGTTCGC
CTGGTTCGGACGACATCACGCTTCAAAACATTCCGCTCGAGGATGGGCAA
CCCCAAGAGATGGTTGGGTTTTGGAAGGTGAATTGTTTGTGTGTCTGCAA
TGAAGACCGTTTACGCTTCTTATTTCATCCACAGAGCGCTGCTGCTGTGG
ACAAGTACGCAAACTTAATGATCTCCAGTGCCCAATTCCATTTTACTCGT
CAAACTGCAGTTGATTTCATTCATTTGGCTCCTCACTTTACGCGATACAG
GTATAGAATTATCTCTGTCGCTGTTGCGTGTAGATGAGGTTGGGTTAACA
GGTGCAGGTGGGTTGCGGAAGCAGTGCCTCCACCGATGCGCACATCCTGA
ACGCGGGCAGCATTATTTTTTTTCAACTCATGTTGAGCATTAAACCACGA
ATACTGGCTTGCAATTGACGAGGATTGGTGAAGTGTGTGCTCGATGCTAG
CTATTGATACCACGTCGATATCAGATACCACCCCCGCCCTTACCCGACTC
GTTCCGAGCGGTGTGTACAAGAGAGCAGCAGGACAAATTAAAATGAACTA
AATGCTATCTGTCGACAAGCCGCGACGTGCGGAAGGCAGGCATAATCTAT
TTTATCAGATTTATGCCCCGTAGCAGGCTGTCAAATGAGCCTTCTAAGCT
ATTCCCCAGCGGTAGTAGCGTCGCCTGAAATAATTCGTCATCCTTGCAAT
GTTTAAAATCCGTCTTTCACAATCAGCGCGTTCACCCACTCCTCGTCCAC
CTCTCATCCACCCGTCTCGTGGTACACTGCCCGTGCGCATGGCATTATTG
CACTCCACGTCAAAGCTGTACGGCAGTACGGCCAACGGCGAAGACCTGAG
TGGCCGCGTCATCCTTCGGGCTGACGGTCAGGTACGCTGTACGATCGGGG
GTGAGAGCACGCACTTCCTCACGCACTCGTACCTCAGAGCTCAAAAATGC
GAAACATGCTGATGAAGATGCTGGTTATTTTTTCTGTGAAGCGGAACAGG
GCGGTTTGAAACGCCCTTTTCTGCACAATTCCAGCGGCTCGAGAAAAAGC
AAGATGTCCCGCGAGTGGGGGGCTTAAAGGGTTTACGTTCACGCTCGAAG
TGGAGCCTATCTCGTCGCTCGAGTCGGCCGTGCACGTTGTGTTTGGTCCT
CTCGACGGGCTGCCGCTTGGTTTGTTGGCCCACAGCATTGTCGCTTGTTT
CGTGCCCTGCTCCTCTCTACCCGCCCAATGGACAGGTCGTGGGCGGCCCG
ACCGTCAGATTTACGCCTGGCGTAAAGTGGAGCGACCCGGCGGGGCTCCA
GCCTGTCGGAGGGAAGTGGTCGGTCTACTCGAGCAAGAGGACCGGCCGTG
CGCGGCTTAGGTTTACCATCGTGCTGTCTTTCCAGAAGGAGCAGCAGCTG
GAGCTGGACGGGGTGGTGTTGATGGTGGACGGCTCCATGGGTGAGATGGC
GGAACATACTATGGAGGCCGAGGAGAGAGCGCCAAAGTCGGCATCCGGCT
GTGGCGAGCCCAAGCCGCAGGTCTTCGGGGGAGTGCGCAAGCGTAGCGGG
GAGGCGACGGACCCGGACGAGGGGGACTTCAGCATGATGAAGATTCAAGC
TGGAGAGGACAAGCTGGTCGCATCCGTGGGGTCTCAGCAGAGGCGGTTTT
GGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1767802..1769856+

>mRNA_P-fluviatile_contig14.2201.1 ID=mRNA_P-fluviatile_contig14.2201.1|Name=mRNA_P-fluviatile_contig14.2201.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1926bp|location=Sequence derived from alignment at P-fluviatile_contig14:1767802..1769856+ (Porterinema fluviatile SAG_2381)
ATGGCGAGTCGCAAGCACCAGCGACGAATCCTCGCGGTTAAGGTTGTGCT
TGCATCGACTTTGACCCGCTCGTGCGTGTCGTTTGCCCCACCATCACCTT
TCGTTGCAAACCGAGTTGGTGGGATTGCGGCGATATTTTGTGTAAAGGGC
TGCAGACCGAGAGGTTGTTGGTCACCGGGCTCCATCACATCACCGCTGAG
AGCGGCAGACTCAGATCTCGACGATGGTGGTGCTCATGGAAACGAAAGCT
TTGAGCATCTTGTGGGTATTGAAGAGTTCAGGGCAGAAAAGTCGAAGAGG
GACCCCGGACAAGCGACAGGCGCAGCATCTGGCGTTGGGAAGGGTGTGGG
CTTAGGATTGGAGGGCGCTATTTTCCCAAGCGAGGCGTTCCCTGGTTCGC
CTGGTTCGGACGACATCACGCTTCAAAACATTCCGCTCGAGGATGGGCAA
CCCCAAGAGATGGTTGGGTTTTGGAAGATGGCGAGTCGCAAGCACCAGCG
ACGAATCCTCGCGGTTAAGGTTGTGCTTGCATCGACTTTGACCCGCTCGT
GCGTGTCGTTTGCCCCACCATCACCTTTCGTTGCAAACCGAGTTGGTGGG
ATTGCGGCGATATTTTGTGTAAAGGGCTGCAGACCGAGAGGTTGTTGGTC
ACCGGGCTCCATCACATCACCGCTGAGAGCGGCAGACTCAGATCTCGACG
ATGGTGGTGCTCATGGAAACGAAAGCTTTGAGCATCTTGTGGGTATTGAA
GAGTTCAGGGCAGAAAAGTCGAAGAGGGACCCCGGACAAGCGACAGGCGC
AGCATCTGGCGTTGGGAAGGGTGTGGGCTTAGGATTGGAGGGCGCTATTT
TCCCAAGCGAGGCGTTCCCTGGTTCGCCTGGTTCGGACGACATCACGCTT
CAAAACATTCCGCTCGAGGATGGGCAACCCCAAGAGATGGTTGGGTTTTG
GAAGCTGTACGGCAGTACGGCCAACGGCGAAGACCTGAGTGGCCGCGTCA
TCCTTCGGGCTGACGGTCAGCTGTACGGCAGTACGGCCAACGGCGAAGAC
CTGAGTGGCCGCGTCATCCTTCGGGCTGACGGTCAGGTCGTGGGCGGCCC
GACCGTCAGATTTACGCCTGGCGTAAAGTGGAGCGACCCGGCGGGGCTCC
AGCCTGTCGGAGGGAAGTGGTCGGTCTACTCGAGCAAGAGGACCGGCCGT
GCGCGGCTTAGGTTTACCATCGTGCTGTCTTTCCAGAAGGAGCAGCAGCT
GGAGCTGGACGGGGTGGTGTTGATGGTGGACGGCTCCATGGGTGAGATGG
CGGAACATACTATGGAGGCCGAGGAGAGAGCGCCAAAGTCGGCATCCGGC
TGTGGCGAGCCCAAGCCGCAGGTCTTCGGGGGAGTGCGCAAGCGTAGCGG
GGAGGCGACGGACCCGGACGAGGGGGACTTCAGCATGATGAAGATTCAAG
CTGGAGAGGACAAGCTGGTCGCATCCGTGGGGTCTCAGCAGAGGCGGTTT
TGGTGAGTCGTGGGCGGCCCGACCGTCAGATTTACGCCTGGCGTAAAGTG
GAGCGACCCGGCGGGGCTCCAGCCTGTCGGAGGGAAGTGGTCGGTCTACT
CGAGCAAGAGGACCGGCCGTGCGCGGCTTAGGTTTACCATCGTGCTGTCT
TTCCAGAAGGAGCAGCAGCTGGAGCTGGACGGGGTGGTGTTGATGGTGGA
CGGCTCCATGGGTGAGATGGCGGAACATACTATGGAGGCCGAGGAGAGAG
CGCCAAAGTCGGCATCCGGCTGTGGCGAGCCCAAGCCGCAGGTCTTCGGG
GGAGTGCGCAAGCGTAGCGGGGAGGCGACGGACCCGGACGAGGGGGACTT
CAGCATGATGAAGATTCAAGCTGGAGAGGACAAGCTGGTCGCATCCGTGG
GGTCTCAGCAGAGGCGGTTTTGGTGA
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