mRNA_P-fluviatile_contig14.2184.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2184.1
Unique NamemRNA_P-fluviatile_contig14.2184.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: D7FVP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP9_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.730e-94
Identity = 150/178 (84.27%), Postives = 162/178 (91.01%), Query Frame = 1 
Query:  475 GGVMKSVSKVTGKSMKAVVHALQPKSVGLGEILDTWKLEQIIGKPPGRVSRCAATVEFRRDGTVATSFEGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKGYFSRKLLDPKIITLEGTIYDMMGKMMWKRRIKSGKFTARRRPSRLSRSGGXXXXRGDKSRKGSTRR 1008
            GGVMKSV K TGKSMKA+VHALQPKSVGLGEILDTWK+EQ++GKPPGRV++CAATVEFRRDGTVATSF+GRE VSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWK+YKG FSRKLLDPKII LEGTIYD+ GKMMWKRR+KSGKFTARRRPSR++R GG    R D  RK S RR
Sbjct:  248 GGVMKSVGKATGKSMKAMVHALQPKSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKVYKGSFSRKLLDPKIIMLEGTIYDVTGKMMWKRRVKSGKFTARRRPSRVTRGGGD---RADPGRKKSARR 422
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: A0A4D9DH60_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DH60_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.370e-39
Identity = 76/152 (50.00%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  481 VMKSVSKVTGKSMKAVVHALQP-KSVGLGEILDTWKLEQIIGKPPGRVSRCAATVEFRRDGTVATSFEGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKGYFSRKLLDPKIITLEGTIYDMMGKMMWKRRIKSGKFTARRR 933
            + K  +K+T  S+  V   LQP K V L E+L  WK++Q I +P G V RC AT+E R+DGTV T FEG+E V+DF F+   WPR+C IEFEA+AFQGP+D EP  K YKGY  R L++   + LEG IYD+ G   W+++ + GKF A +R
Sbjct:  167 LFKGAAKITSSSVGKVAGLLQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVTDFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 318
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: A0A836CFX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.330e-20
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:  601 GKPPGRVSRCAATVEFRRDGTVATSFEGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKG 810
            G   G V  C AT+E R DG VAT F+GR+ +SDF F AHAWPRAC I FEA+AFQGP D EPV   YKG
Sbjct:   13 GHVGGHVVPCVATLELRADGAVATRFQGRDLLSDFEFTAHAWPRACAIAFEARAFQGPRDPEPVLMRYKG 82
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: A0A7S1D3U6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3U6_CYCTE)

HSP 1 Score: 92.8 bits (229), Expect = 1.490e-18
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  628 CAATVEFRRDGTVATSFEGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKGYFSRKLLDPKIITLEGTIYDMMGKMMWKRRIKSGKFTARRRP 936
            CAA +E    G V   +E + FVS F FR   WP++C IEFEA+AFQGP DEEPV   YKGYF RKL D  ++ + G +Y     ++   R K G F  RR P
Sbjct:   14 CAANIELTPRGEVLVRYEDKVFVSTFLFRERNWPQSCWIEFEARAFQGPDDEEPVLMRYKGYFRRKLADSSVVKMIGHMY-----IVPNTRKKRGPFAQRRGP 111
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: A0A7S2S4V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4V2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.720e-18
Identity = 61/171 (35.67%), Postives = 89/171 (52.05%), Query Frame = 1 
Query:  520 KAVVHALQPKSVGLGEILDTWKLEQIIGKPPGRVSRCAATVEFRRDGTVATSFEGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKGYFSRKLLDPKIITLEGTIYDMM---GKMMWK----RRIKSGKFTARRRPSRLSRSGGXXXXRGDKSRKGSTRRK 1011
            KA  +   PK V   +I+  W+L+Q         + CAA VE    G V  +++  EF + + F   +WPR+CTI+FEA+AFQGP DE+PV  +Y   F RK+ D  +I + G IY +    GK  ++    ++   G FTAR+R +  S   G    RG      ST R+
Sbjct:  154 KAAYYLASPKHVSRQDIVGVWRLDQT-----ALSASCAANVELTMRGDVLVTYQAEEFRTPYYFSERSWPRSCTIQFEARAFQGPRDEQPVNMLYVASFRRKIADRNVIKMVGKIYQITHSKGKFPFRGSKSQKTLVGTFTARKRFTPPSSQRGHNTKRGRGQNPQSTARR 319
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: A0A7S4MEB1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEB1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.170e-17
Identity = 57/165 (34.55%), Postives = 77/165 (46.67%), Query Frame = 1 
Query:  520 KAVVHALQPKSVGLGEILDTWKLEQIIGK-PPGRVSRCAATVEF--RRDGTVATSFEG-----------------------------------REFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKGYFSRKLLDPKIITLEGTIY--DMMGKMMWK 894
            KA  +   PK V   ++   W+L+Q +G  P G  + CAA VE   R D  V  S  G                                   REF + + FR  +WPR+CT+EFEA+AFQGP D+EPV   Y+GYF RK+ D  ++ + G IY     G+  WK
Sbjct:  236 KAAYYLAAPKRVSRNDVCGVWRLDQSVGPMPDGPFASCAANVELTPRGDCVVRYSPSGGSATAEASXXXXXXXXXXXXXXXXXXXEGGDSNNIREFRTPYKFRERSWPRSCTVEFEARAFQGPDDDEPVTMYYRGYFRRKIADRSVVKIVGNIYLASRGGRGFWK 400
[Close]
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Match: A0A7R9ZAC9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAC9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.340e-14
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  679 EGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIYKGYFSRKLLDPKIITLEGTIY 867
            E +EF + +TFR  AWPR+C +EFEA+AFQGP D+EPV   Y+GYF RK+ D  ++ + G IY
Sbjct:   17 ETKEFRTPYTFRERAWPRSCYVEFEARAFQGPDDDEPVVMFYRGYFRRKIADRSVVKMVGKIY 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVP9_ECTSI2.730e-9484.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DH60_9STRA2.370e-3950.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A836CFX6_9STRA7.330e-2062.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1D3U6_CYCTE1.490e-1847.57Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2S4V2_9STRA2.720e-1835.67Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4MEB1_9STRA4.170e-1734.55Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7R9ZAC9_9STRA2.340e-1453.97Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1590727..1594812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.2
Seed ortholog evalue2.1e-80
Seed eggNOG ortholog2880.D7FVP9
EggNOG OGs2ETV1@1,2SW46@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005950.1
Exons5
Model size1688
Cds size1119
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.5496914-UTR-P-fluviatile_contig14:1590726..15907711622815616.5496914-UTR-P-fluviatile_contig14:1590726..1590771Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1590727..1590771 +
1693562468.358697-UTR-P-fluviatile_contig14:1590726..15907711693562468.358697-UTR-P-fluviatile_contig14:1590726..1590771Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1590727..1590771 +
1622815616.5626898-UTR-P-fluviatile_contig14:1591491..15915001622815616.5626898-UTR-P-fluviatile_contig14:1591491..1591500Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1591492..1591500 +
1693562468.3677013-UTR-P-fluviatile_contig14:1591491..15915001693562468.3677013-UTR-P-fluviatile_contig14:1591491..1591500Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1591492..1591500 +
1622815616.6109958-UTR-P-fluviatile_contig14:1594297..15948121622815616.6109958-UTR-P-fluviatile_contig14:1594297..1594812Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1594298..1594812 +
1693562468.4241016-UTR-P-fluviatile_contig14:1594297..15948121693562468.4241016-UTR-P-fluviatile_contig14:1594297..1594812Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1594298..1594812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.572485-CDS-P-fluviatile_contig14:1591500..15920401622815616.572485-CDS-P-fluviatile_contig14:1591500..1592040Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1591501..1592040 +
1693562468.375804-CDS-P-fluviatile_contig14:1591500..15920401693562468.375804-CDS-P-fluviatile_contig14:1591500..1592040Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1591501..1592040 +
1622815616.5820472-CDS-P-fluviatile_contig14:1592402..15925551622815616.5820472-CDS-P-fluviatile_contig14:1592402..1592555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1592403..1592555 +
1693562468.3904345-CDS-P-fluviatile_contig14:1592402..15925551693562468.3904345-CDS-P-fluviatile_contig14:1592402..1592555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1592403..1592555 +
1622815616.591845-CDS-P-fluviatile_contig14:1593173..15932331622815616.591845-CDS-P-fluviatile_contig14:1593173..1593233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1593174..1593233 +
1693562468.400838-CDS-P-fluviatile_contig14:1593173..15932331693562468.400838-CDS-P-fluviatile_contig14:1593173..1593233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1593174..1593233 +
1622815616.6014192-CDS-P-fluviatile_contig14:1593931..15942971622815616.6014192-CDS-P-fluviatile_contig14:1593931..1594297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1593932..1594297 +
1693562468.409659-CDS-P-fluviatile_contig14:1593931..15942971693562468.409659-CDS-P-fluviatile_contig14:1593931..1594297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1593932..1594297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2184.1prot_P-fluviatile_contig14.2184.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1591501..1594297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2184.1

>prot_P-fluviatile_contig14.2184.1 ID=prot_P-fluviatile_contig14.2184.1|Name=mRNA_P-fluviatile_contig14.2184.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=373bp
MRRDRRRHEDGDEEEEDEEEDDDDGNDDDWGDERSEGGDADPDDDDFGGG
FSEEADLSEKDYDEEEYAAAPAVSPGGNARRDRKPAAGGRSRAKSKPEPI
PNHPAYDDRNCGAGGSRRGRAAGPPPSGRKKAMVKGRGSGGGVMKSVSKV
TGKSMKAVVHALQPKSVGLGEILDTWKLEQIIGKPPGRVSRCAATVEFRR
DGTVATSFEGREFVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKIY
KGYFSRKLLDPKIITLEGTIYDMMGKMMWKRRIKSGKFTARRRPSRLSRS
GGGGGGRGDKSRKGSTRRKTRNVEADGQDYEAYLGRGDGGKPRGDRVGGE
GRKRKGKRSSRSSRTPADSDEL*
back to top

mRNA from alignment at P-fluviatile_contig14:1590727..1594812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2184.1 ID=mRNA_P-fluviatile_contig14.2184.1|Name=mRNA_P-fluviatile_contig14.2184.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4086bp|location=Sequence derived from alignment at P-fluviatile_contig14:1590727..1594812+ (Porterinema fluviatile SAG_2381)
AGGAGAGATTCGTCAACGGTGGTAATTGGGGCTGTTCTCGAGGAGGTGGG
GCATTAGGTTGCATCAATGCGCTTGTGTGTTCGAAGAGAAGATTCATGCT
GACATGCAACCACCCCATTCCTGCAACCAACGACACAAGCCAGCGCGCAA
TATGCTGTCATGCTCACCCGGGCAACACTGAGGATTAGCATCCCAGTTTG
TCTGCTGTTGTTTGTTTGTGTTTTCACTGCTGTCAGTCTGGGAGATGTTG
GACCCTTCTTCACCCTGTCTGTGTGCAAAATGCTACGCGTGTCACCCGCG
GAGCACTTGTAAAAAGCGTGTTCGTCTCCACCTACTGCTCTCGTCCTGTG
ACAGACAACAGAGTCACGAGAGTTTCAAGAATCTCGTTCACCAGATCGAG
CATGATTTCCTTGCGCTGCTGAGGTGCTTCGGGAGAGAACGCGCCACCAT
ACTCCCTTCGCCCTGCATTCCCCTTTCTATTCTCCCTCCTCTCTCTATAA
GAATACGGCGGAATTTGAACCGGGACGAATTATCCCGGGTCCTATTCCAC
CGCATCCTACACACCAGCAGCATTGAATTCGTGGCAGATAGGTAGCAGTT
GTCGTCCACATATCCAGTCGTGGTGCCTACATTTTTCTGGTGGGAAAACT
CTTGGAGCCCTTGCTGATTTGATTGATTACTTACTGCCGATCCAAGGGGC
CGCGCATGGTGTCGTTCCGTTGTACTCACGCTCATGGTGCCGAACAATTA
CCTACGTGACTCCAGCGGTTCGGGATGCGAAGAGATCGGCGTCGGCACGA
GGACGGCGACGAGGAGGAGGAGGACGAGGAGGAGGACGACGACGATGGGA
ACGATGACGACTGGGGGGATGAGCGAAGCGAGGGCGGGGATGCTGACCCG
GACGACGATGATTTCGGCGGCGGGTTTTCCGAGGAGGCAGATTTGTCGGA
GAAGGATTACGACGAGGAGGAATACGCAGCAGCACCGGCGGTGTCGCCCG
GCGGCAACGCACGCCGCGACCGGAAACCGGCGGCCGGCGGTCGTTCGCGT
GCGAAATCGAAACCGGAGCCAATCCCCAACCACCCCGCTTACGACGACCG
AAATTGCGGCGCCGGCGGGAGCAGGAGGGGGAGGGCAGCGGGGCCACCAC
CGTCCGGCAGGAAGAAGGCGATGGTCAAGGGTAGAGGGAGCGGCGGCGGT
GTCATGAAAAGCGTCAGCAAGGTCACGGGCAAGTCGATGAAGGCCGTGGT
GCACGCGCTGCAACCGAAGTCGGTCGGTCTCGGGGAGATCCTGGACACGT
GGAAGCTTGAGCAGGTAGAACTTACTCGGGATGCGAGTGTTCTTACCGCA
CATGCCGTCGATTATTGCTGTTGATGAATCATCGCCAACCATGGGCGAGA
TTGGCGACCGGGGCAGAGAAATGAAGTCGACAAAATTTTCGCCCTCGAAT
CTTCCCGCGATTAATCGCGTGTGTTGTTTCGGATACCAGATGGCTTACCG
TGCCCGGATTGGTGCTGTCGAATAGAAGGCGGACTTATGCTTTTTTGCGC
ACAAGGTTTTGGCTAGACGTATCTCCCCGGAGCAGTGATGATGGGAAATT
CCATCCCCCAAGCGTCCCCCAATCCAAACGCTCGTCTCCTTGCATTCACG
TATCGACGTGCTTCATAATTTTCAAGATCATCGGCAAGCCGCCAGGGCGT
GTTTCGAGGTGCGCGGCGACAGTTGAATTCCGTAGGGACGGCACGGTCGC
GACGTCGTTCGAGGGCCGCGAGTTCGTCTCCGACTTCACCTTCCGCGCTC
ACGCATGGCCGAGGGCGTGCACAATCGAGGTGCGGTCTTTAGAGTACGCG
CCTTTGCGTATGCGCGAGACGAAGCGTGAAAAACGTGCGCATTATTATGC
GTTCGTTGTTGCACATGCGTGCTACGGGTCAAGTTCACGCGTAGCGGGAC
ATAACTGCTGCTCCCGTCCCTTTTGTTGAAGCGCCACTTAACCCTGGTTT
CCAGCGTAGAAGTGCCAGCCTGTAATTTTTCGTAATGCTGCAGTGACGGA
GCCCAGACTTCTGAATAATAATTTCCGTCATGCCGTGTTTTGTCACATCG
CTGGTTGCCTCTGCGAAAACTTGGATACCAATCGTCCGTAGGATTCGCCT
TCAAAGCGACTCATGCGGCGGAGCTACTCTAGCCCATGCCCTCAGCAGCG
TTTATATAGTGAGACTGAAACGACTCCAACAGACGAGCCGTGGATGGAGT
CAGCGCTGGTCCATAAGTAGTAGTGTTTTTTTACAGTAGCGTTTGTCCCG
CGATAGCCAACGTGAAGGAACAAGTGTACCTCGAAATGCTGTTTCGTTTG
TGGCCCCCCTTGTCATACCTGCTCGCTTACGACCTCATTTTTCGCTGGCG
TATTCGTGCGTGTGGCTCCGGTCCGGCTGGTTTTGAGACGGCCTAAGTTT
GAAGCAAAGGCTTTTCAAGGGCCGTGGGATGAAGAACCAGTCTGGAAAAT
CTACAAGGTGAGCTGTTTCGCCGGGCGAACGAGTAGTTGTTTTCCAGGAA
TGGGTACCACCAAAAAAAGGAAAGGGAACGGCGGTAGTTCCTAAAACTGG
GTTCTCGTATGTATCTGGACCTTTGAAGGGGGATGACACCCGCGACGCTT
CTCCCCACCTACCCCACATTTGGTGACTGCTCCACGTAACTGTTCGCTCA
ACTGCGTGGTACGTACCTTCACTAGCTCGGTGTTGGGAGCAAGGTCGCGT
TCCATGCTCTGTAGCAGCTGCAGCAGGCACTCGCGGCGCAGCTCTTTGCA
CCAGAGGCGCCGCCTTGATATGGCAAAACACACCAGGAGAGGGTGAGGAG
TCTGCAGAGGCGTGAAGGGAGTCCGGCTAGACCCTAGCTAATCAGCACTT
GACTCCTGCTGACCGGCTGGTTTCGAATCGTTTGAAATACAGCGCAAAAA
AAGACGATTAATACAAGCCACGGGACGAGGCTGGGAATCAGAAATCCTAA
AACCTGAGAGTGGGGCTTTCAGTGGCTCACCTGCGCGTGAAACTTTGTTG
CCATTCCTCAGGATGTTGGTTCTTCCGGGTAGGGAGACTATCGCCCTCGG
GTAATTGTCGTGGGACACTCAATGATGTATCGCTCTTGTCGCGGGTCCTC
CCGCTGCTCTTATTGCCCATGTCCTGCTTTCATCCCTTGCCTCTCCTCCT
CGCAGGGTTACTTCTCCCGGAAGCTGCTGGATCCCAAGATCATTACGCTG
GAGGGAACGATCTATGACATGATGGGCAAGATGATGTGGAAGCGAAGGAT
AAAATCGGGCAAGTTCACCGCCCGCCGACGGCCATCGCGCCTGTCCCGCA
GCGGCGGCGGCGGCGGTGGACGCGGGGACAAATCCAGGAAGGGAAGCACC
CGGAGGAAGACAAGAAACGTCGAAGCCGACGGTCAGGACTACGAGGCTTA
TCTTGGACGGGGAGACGGGGGCAAGCCAAGGGGCGACCGCGTCGGCGGCG
AGGGGAGAAAGCGGAAGGGCAAGAGAAGCAGTAGATCTTCGCGGACTCCT
GCTGACAGCGATGAACTATAGACGGCGGAGCCGCCGCGACGATATCAGTT
TGTTGTGAAAGGCGCTGCTGCGTTTTGTACGCACACGGGATGCGAGACAT
GAAAAACCAGAGACAAGGACGACGGTGGTGCGGTAGAAGATCTCAAGTAG
TAAGGACCGACGCGGTGCGGGCAGACACGGGATGGCGGGGACGATGGCGA
AAAAACGAGATTGCGGGCCACGGGAATGGTTGCCGCGACACTAGCCTCCC
GTTCCTCCGGCCGGCCCCTGTTACGCCTCAAAGGAGAAGCAAACCACCCA
ACGTCTCGCATCCCCCGGCATGGCGGCAGGATACTCCTCGCCTGCCGCGG
AAGTTGCAGGTAGTTAGTCGTTATCAGGGGGGCTTCAGGAGAGAACTGTC
AAGCATGAAAGCCTGCATCGTTTGTATGTCACAAGGCTGTCGAATGCCTT
ACATGTTGCCAACTTTTCTTTCAAGTAAAACTGGACATTGAAAACAGAGG
CACCGCTTGGCGAGCTCCCGTGCGTTGCTTTCTTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:1590727..1594812+

>mRNA_P-fluviatile_contig14.2184.1 ID=mRNA_P-fluviatile_contig14.2184.1|Name=mRNA_P-fluviatile_contig14.2184.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2238bp|location=Sequence derived from alignment at P-fluviatile_contig14:1590727..1594812+ (Porterinema fluviatile SAG_2381)
ATGCGAAGAGATCGGCGTCGGCACGAGGACGGCGACGAGGAGGAGGAGGA
CGAGGAGGAGGACGACGACGATGGGAACGATGACGACTGGGGGGATGAGC
GAAGCGAGGGCGGGGATGCTGACCCGGACGACGATGATTTCGGCGGCGGG
TTTTCCGAGGAGGCAGATTTGTCGGAGAAGGATTACGACGAGGAGGAATA
CGCAGCAGCACCGGCGGTGTCGCCCGGCGGCAACGCACGCCGCGACCGGA
AACCGGCGGCCGGCGGTCGTTCGCGTGCGAAATCGAAACCGGAGCCAATC
CCCAACCACCCCGCTTACGACGACCGAAATTGCGGCGCCGGCGGGAGCAG
GAGGGGGAGGGCAGCGGGGCCACCACCGTCCGGCAGGAAGAAGGCGATGG
TCAAGGGTAGAGGGAGCGGCGGCGGTGTCATGAAAAGCGTCAGCAAGGTC
ACGGGCAAGTCGATGAAGGCCGTGGTGCACGCGCTGCAACCGAAGTCGGT
CGGTCTCGGGGAGATCCTGGACACGTGGAAGCTTGAGCAGATGCGAAGAG
ATCGGCGTCGGCACGAGGACGGCGACGAGGAGGAGGAGGACGAGGAGGAG
GACGACGACGATGGGAACGATGACGACTGGGGGGATGAGCGAAGCGAGGG
CGGGGATGCTGACCCGGACGACGATGATTTCGGCGGCGGGTTTTCCGAGG
AGGCAGATTTGTCGGAGAAGGATTACGACGAGGAGGAATACGCAGCAGCA
CCGGCGGTGTCGCCCGGCGGCAACGCACGCCGCGACCGGAAACCGGCGGC
CGGCGGTCGTTCGCGTGCGAAATCGAAACCGGAGCCAATCCCCAACCACC
CCGCTTACGACGACCGAAATTGCGGCGCCGGCGGGAGCAGGAGGGGGAGG
GCAGCGGGGCCACCACCGTCCGGCAGGAAGAAGGCGATGGTCAAGGGTAG
AGGGAGCGGCGGCGGTGTCATGAAAAGCGTCAGCAAGGTCACGGGCAAGT
CGATGAAGGCCGTGGTGCACGCGCTGCAACCGAAGTCGGTCGGTCTCGGG
GAGATCCTGGACACGTGGAAGCTTGAGCAGATCATCGGCAAGCCGCCAGG
GCGTGTTTCGAGGTGCGCGGCGACAGTTGAATTCCGTAGGGACGGCACGG
TCGCGACGTCGTTCGAGGGCCGCGAGTTCGTCTCCGACTTCACCTTCCGC
GCTCACGCATGGCCGAGGGCGTGCACAATCGAGATCATCGGCAAGCCGCC
AGGGCGTGTTTCGAGGTGCGCGGCGACAGTTGAATTCCGTAGGGACGGCA
CGGTCGCGACGTCGTTCGAGGGCCGCGAGTTCGTCTCCGACTTCACCTTC
CGCGCTCACGCATGGCCGAGGGCGTGCACAATCGAGTTTGAAGCAAAGGC
TTTTCAAGGGCCGTGGGATGAAGAACCAGTCTGGAAAATCTACAAGTTTG
AAGCAAAGGCTTTTCAAGGGCCGTGGGATGAAGAACCAGTCTGGAAAATC
TACAAGGGTTACTTCTCCCGGAAGCTGCTGGATCCCAAGATCATTACGCT
GGAGGGAACGATCTATGACATGATGGGCAAGATGATGTGGAAGCGAAGGA
TAAAATCGGGCAAGTTCACCGCCCGCCGACGGCCATCGCGCCTGTCCCGC
AGCGGCGGCGGCGGCGGTGGACGCGGGGACAAATCCAGGAAGGGAAGCAC
CCGGAGGAAGACAAGAAACGTCGAAGCCGACGGTCAGGACTACGAGGCTT
ATCTTGGACGGGGAGACGGGGGCAAGCCAAGGGGCGACCGCGTCGGCGGC
GAGGGGAGAAAGCGGAAGGGCAAGAGAAGCAGTAGATCTTCGCGGACTCC
TGCTGACAGCGATGAACTATAGGGTTACTTCTCCCGGAAGCTGCTGGATC
CCAAGATCATTACGCTGGAGGGAACGATCTATGACATGATGGGCAAGATG
ATGTGGAAGCGAAGGATAAAATCGGGCAAGTTCACCGCCCGCCGACGGCC
ATCGCGCCTGTCCCGCAGCGGCGGCGGCGGCGGTGGACGCGGGGACAAAT
CCAGGAAGGGAAGCACCCGGAGGAAGACAAGAAACGTCGAAGCCGACGGT
CAGGACTACGAGGCTTATCTTGGACGGGGAGACGGGGGCAAGCCAAGGGG
CGACCGCGTCGGCGGCGAGGGGAGAAAGCGGAAGGGCAAGAGAAGCAGTA
GATCTTCGCGGACTCCTGCTGACAGCGATGAACTATAG
back to top