mRNA_P-fluviatile_contig14.2181.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2181.1
Unique NamemRNA_P-fluviatile_contig14.2181.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.260e-7
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   82 RAFATQATRLETLVAGKKCEGYMTDLMT 165
            RAFATQA R+ETLVAGKKCEGYMTDL+T
Sbjct:  257 RAFATQAARMETLVAGKKCEGYMTDLIT 284
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.090e-7
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   82 RAFATQATRLETLVAGKKCEGYMTDLMT 165
            RAF+TQA RLETLVAGKKCEGYMTDL+T
Sbjct:  100 RAFSTQAARLETLVAGKKCEGYMTDLIT 127
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5JW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW86_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.030e-7
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 RPAKEAKAAANTMHGNIVNCWAAATNK 81
            R AKEA+AAANTMHGNIVNCWAAATNK
Sbjct:  203 RTAKEARAAANTMHGNIVNCWAAATNK 229
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5KCL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.280e-7
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 RPAKEAKAAANTMHGNIVNCWAAATNK 81
            R AKEA+AAANTMHGNIVNCWAAATNK
Sbjct:  255 RTAKEARAAANTMHGNIVNCWAAATNK 281
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5KMG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 9.560e-7
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 RPAKEAKAAANTMHGNIVNCWAAATNK 81
            R AKEA+AA NTMHGNIVNCWAAATNK
Sbjct:  131 RTAKEARAATNTMHGNIVNCWAAATNK 157
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.730e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   70 ATNKRAFATQATRLETLVAGKKCEGYMTDLMT 165
            A    AFATQA RL+TLVAGKKCE YMTDL+T
Sbjct:  339 AATPEAFATQAARLKTLVAGKKCEDYMTDLIT 370
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BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.330e-5
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 RPAKEAKAAANTMHGNIVNCWAAATNK 81
            R AKEA AAANTMHGNIVNCWAA+TN+
Sbjct:   53 RTAKEASAAANTMHGNIVNCWAASTNE 79
[Close]
BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Match: A0A6H5JW43_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW43_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.420e-5
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    1 RPAKEAKAAANTMHGNIVNCWAAATNK 81
            R AKEA AAANTMH NIVNCWAAATNK
Sbjct:  157 RTAKEAGAAANTMHENIVNCWAAATNK 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JBV0_9PHAE2.260e-789.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC0_9PHAE3.090e-789.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW86_9PHAE6.030e-792.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCL0_9PHAE7.280e-792.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG4_9PHAE9.560e-788.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM8_9PHAE9.730e-675.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZQ9_9PHAE1.330e-585.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JW43_9PHAE3.420e-588.89C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1583615..1588777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.4000823-CDS-P-fluviatile_contig14:1583614..15836981622815616.4000823-CDS-P-fluviatile_contig14:1583614..1583698Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1583615..1583698 -
1693562468.2965124-CDS-P-fluviatile_contig14:1583614..15836981693562468.2965124-CDS-P-fluviatile_contig14:1583614..1583698Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1583615..1583698 -
1622815616.4150438-CDS-P-fluviatile_contig14:1588693..15887771622815616.4150438-CDS-P-fluviatile_contig14:1588693..1588777Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1588694..1588777 -
1693562468.3052435-CDS-P-fluviatile_contig14:1588693..15887771693562468.3052435-CDS-P-fluviatile_contig14:1588693..1588777Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1588694..1588777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2181.1prot_P-fluviatile_contig14.2181.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1583615..1588777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2181.1

>prot_P-fluviatile_contig14.2181.1 ID=prot_P-fluviatile_contig14.2181.1|Name=mRNA_P-fluviatile_contig14.2181.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=56bp
RPAKEAKAAANTMHGNIVNCWAAATNKRAFATQATRLETLVAGKKCEGYM
TDLMT*
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mRNA from alignment at P-fluviatile_contig14:1583615..1588777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2181.1 ID=mRNA_P-fluviatile_contig14.2181.1|Name=mRNA_P-fluviatile_contig14.2181.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5163bp|location=Sequence derived from alignment at P-fluviatile_contig14:1583615..1588777- (Porterinema fluviatile SAG_2381)
CGCCCGGCCAAGGAAGCGAAGGCGGCGGCGAACACGATGCACGGGAACAT
CGTCAACTGCTGGGCCGCAGCAACAAACAAGCGGGTGAGTTGGTTGGAGA
TTCCGTTTGCATCCTTTGCATGTTCGTGAATGACAAGTGTTTGTCCGGTG
CATCAGCTGTTTCGTCTCCCTCGCCCGCACTTACTCGGCTTCTTCCCTAT
TGGAGAGGGTACACTTAGCTCAAGGGACGCAAATGCAGTCGCGGGTTTGT
CCTCTGGTTCCAGCGGCGCCGGTTCTCTCGGGATGGGGTGGTCTGCCGGC
GGCCTGTAGAGGATGGGCTCGATTTCGAAAGGCTCGAGGAGTTCGTAGAC
CGCTTCGCGCTCGGCATGGTAGTCGTTGGCGCGCTCCTCGATCAAAGAGT
TCCTGGCCCACTCGGCCTCCTCGTCCGTCATCTCTTCCAAGATGCCCGTC
GCCCACGCGACCTGGTCGCCTTCCGGCGGGGTACTCGTGACGACGCGGCA
CATCACCTCCGTTGCCGCCTTCACCTCCTCCAGGCGCGAATCATCGATCT
GGACAGCGTTTGCGCCCTCGTTGGCCTCCCGCTGCCGGATACTCGGCCTC
GGTTTCGCGCGGAGACGGGGGCGGCTCATGACTTCCCCGAGCGACTCGCT
GTTGCCAGGGTTGTCGAGCCGACGGGCCTCGCCCGGCGCGGGCGCGGGCA
TATCTGTCTCGCTGTCGCTGCTGGTGGCACCGGCGTCTCCGCCTTCGTTG
CCGCTCTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCACTGCTGCTGCT
GCTGTCGTCGCGGTCGGCATTGCTGCCGCCGCCCACACCGGCATCGTCCA
CCGGCGTGGTGGAGGAGGCTTCTACTGAGCCCTCCCCGCTCGAGGACGCT
CCACCGTCGTCCCCGCTGCTCCAGGGCGCCCCGCTGGCACCCTCCCTGAC
CCCATCCGGGGGAGCGGTCGGCGGCGCCGCCGCCGTCGACATCGGCGACG
GCCCCGCGGACCCCAGGGTGACCACGTCGAGGATTGAGCTGCTAGGCTCG
CTCCCCTCCCTCCCTCCTCGGCGTGTCCCCTCATCGCCTCCCTCGTCACC
CCTGTTGTCTGTGGGGGGCAGCAGCTGCAGCAGCTGCGACGGTGGGGAGG
AAGGGGCAGATCGCCAAGTGAAGTTACGGGTGATGAGTACGCTGCCATTC
TTCATCAGTATGCGCACGCAGTCTCTGTTGTGGTCATGTGCCGGCCCGAG
GTAAAAGCTCTCTGCGTCTTTCGGGTCGGACTTGTACACGCGCTTGACTT
TCGTTACAGCAGGCGCGAGGAAGGGGAACGTCGCATCCCGAGGAGGCGGT
GTCCCCTTGAACATCTCCCACGGAGACTTGTTGCCAGGGTTGGCACTGGT
GGCGGTAGCATTCAGGGCATTGCAAGCCCAGCTGTACGCCTCGGCCCACA
GGCCGGGGTTATGCGGAGCATCGGGGTAGAGCTCCATCGCCTGCACCATT
GCCGCCGCAGCGGCATCTTTGATGAGGGCAAGGCCTCGCTCTGCGACACA
GTTGTACTGCGGGGTGTGGGGGGGTGAGAACTCCTGTTTGATGCAGTACT
TCCTGCACAGCGCTGCGAATTTCTCCCCGGCAAATTCCCCCCCGTTGTCC
GAGTGAACGATCATGACTGTCGAAGGAGCCTTGTTTGCACGGTTCTCTGC
CAGAAACTTCTCGAACTTGTCGCTGGCATCAGACTTACGGTGTAGGAAGT
AAATGCGAGTCCAACGCGACCGATCGCACCGCACAATGAGCGGGTACAAG
TATCCCCTCATGCTCGGGACCCTAGCCCTTCCACCAAGGTCAACGAAGAG
CGCTCGAGATTCTTATCTGCGCGTCGGCTGGTAGTCTTGCTGATGCTCTT
GCCCAGGCCCTTCGCCATTGAGCAGCCCAAGCACGGACGGAGCTCCCCCG
ACAGCTTGAACTGCTGCTGCGCCGCCGTCCTCTTGAGCATCACCTCGTGA
GAATGGCCGTGGCGCAAGTGGAAGTGGTTGATATTCTCGGGGGTGCTGGT
CGCTTTCGCAGACCCGGGGGCGATTACGGCACAGGCTGTGTCCACATCAT
CACCAGACAAACGGACTCCGCCTAGCACGGGCATTTTTCCGACATACGAA
AAGAAACACGACTCCCCCCCTTTCACCGCCAACTCGATCCCCTTCTTATC
ACCCTTGTACGTGTGGCCTTCCAGGCCCAGGGTGGAGAACGAGATAAGAC
TCTGAGCAAGCTTAGGCACCCACGCGACATTGTTCAGCCGCACTCTCAGC
ATTCCACTCTCGTCGCATGTTGGAAATGCGACGATCATGTCCCCACGTCC
TTCAATGGGGATTGAACCCCCGTCAGCAAGCATAACTCTCTTGCTGCATT
CGCTGAAGTTCACAAAAGCATCCGCGTTCGGGGTCATGTGCGATGTAGCA
GCAGTGTCAGCTGCAAACATCTCTACGTGCCTGTCCGCCGCCCCCACACC
CTCTCCATCAATAGACAACCACTTGCCTGGAGGGCCACGGGCCAGGAACA
CCGAATCTTCGACATCGGAGCCGTCTCCTCCCCCCTCCGGCGCCTCCCTA
GCTAGGGACGCCTTCTCAGACGGGCACTTGCTCTTGTTGTGGCCAAAGCC
CCCGCAGGTGTCGCACCTCTCGAGGCGCTCCTCAGGGGGGGTCTTACAGG
CCGCCTTGTGATGCCCCCGTTGTCCGCACAGGTAGCATTTCACTTTTACA
TTACCAGCGGCTCCGCTGCCGCCACCGGTTCCGCCGCCGCCGGCGGCTTT
CGCGCCGTCGGCTTTGGTGTTGCTGCCGGACCCGTTCCGCCCGCCTCGTC
CGCTGCCGCCGCCGTCGCCCCCGCCGCTTGCACCGGCGAAAAAGGCTGAT
TCCGCCCGCGCCCCCTTTTTTCTGCTGTTCTGGGTGCTGGCGTACACGGC
GTTGAGCTTGCGGACAACCTCCTCCCTGTTCATCGCCTTTGCAGTCAACA
GGGCGAGTCTCGACTCGCGGTATGCGGGAATGTCCGCGAGGAGGTACAGG
AAGTGGGAGAGAACGAATTCGGGTGAGGCACCGCACTTCATCGAACCCAG
CCGAGCGTACAGGGATTCGAGGTGGTTCAGCAAGTAGCTGGGTGGCTGGT
CCATGTTGGTGGGAGCACGACACTCCAAGACGCTCGACATGAGGGACATC
AAAGTCCCCTGCGACTCGGGATCATAGATCTTCCCGAGTTCCTCAAAAGC
ATCACGCGCATTGGTGTGCTTCTCGACGATGGCTTGATCCTCCTCCCGCG
GGAGCGCAGTCAGGAGAAAATTCAGGGCATCAATGTTGACGTTTATCTCG
TGTTGAGAGAATCCCATTCGTCGGAGGTCTTCCGTCGACTTTGAATCATC
ATTGACAGGTACAACCCTGCTTGTCCCCACGAAAACCTCATCTATGTGGG
CTGATCTGGCCGCAAGGATGAGTCTCTTGCTGAAATTTTGCCACAGCGGA
AGTCCCTTCTTTCCTTGTTCCTGAAATTTCGGGATCGGCGTTTTCAATGA
TCGGAGGTGTTGTAAATCGCCGCCGCCGTCTATGCACGCTCCATTGCGCA
CGCCACCGAAGACACCACGAGTACTCTCACCTTCGGGGCCTGAGCCCCTA
GCTCCCTCGTGGTTGCCGCCCAGCGCTCCGGCTGGGCCCGCAGGTTGGAG
AGTCCCGCCATATGCGGCCCGGCTATGGGCCATGTCAGCTTCGGCTCCAG
CGGGGGGCTCTACTTGCCCCCTCGCAGTTCTAGTGCTGTCCGCAGCAACA
GCACTAGGCTCCCGTTCCGCGGTGGCAGCTCTGAAGCCCTCCACCTCGGT
CCTCAGGCTGCCCACTTCCCGCGCAAGCGATTCCATTAAGTGCTCCATCC
GTGATTTCTCTGTCTCCCCTCCCTCCCTCCTAGCAGGGGGAGGTGGATCA
GATGCCAGCCTTTCACTGCTGGGCTCCGCCATCTCTCACAAGGAGCGCAA
TCTCCCCGGGGATCACTCTAGAGTGTTGGTATTGCTTATAGGCTCCGAAA
GAATGGTTTAATAGCTTGTTAACGTCACGTGGAGGACCAGGTCCGACCGC
TCACAGGAGGTGGCACATACACGGCGTGTGCCATGGGGGCACGACAAACG
AATCGATAGTACCCCCTCGCGGGTCACATCCACGGGTACATAACACCGTC
AAGTCGATATATCCAAACTATTCGCACTGCCACGAACAGGGCGGACATCT
TTACGGAAGCCCGTAGCGACACTTTATGCATTGAGGGTATGCGACATGGT
GTTGGTCTGTGTGGCCCCTGGTGTTCGGGTGCCACATCTGCCAGTTAATT
TGTGAAAGTGAAAGTGAAAGTGAAAGTGAAATCTGAAGCAAAGACGCTAT
ACCAATCTAAGACTCAGATACTCAGAGACGATCTGAACCCTTGTGCACGG
TGCACAACCTGAAGCTCGGTGCATACTCGACGGATTGCGCTATTCGAACT
CGGTCAGAGGTCGATCATTCCCTGATTTCTTCTATCAACAGCGACGCGAA
CAGGTCTGAAACCAATTGCAATATTGACGACTGCTACTGGTGGACGGCCG
CCATTGTCAGACGGCCCCGTCGCGGGAATGTATCTGAATGCTCTGCCTCA
GTTCCACCTATCATCAACGACACGCTTTTCGTTTGTCTTTCCCAGAGGTA
ATCTTGACCGATGCTGATCTTGCGATGACCGCTGCAATAGCCTCCTGTTG
GCCAGACACGCTGCATTTGCACTGCTTGTGGCACATCTTCAAGAATGTCC
TCAAGAAATGCTCATCATTTCCTGACAATGACGCCAAGACCGACATGATG
CGTACCTTTAGACGCGCAGCGTATGCGGCTACTCCGGAGGTGCGACACCA
GTCCATCGTGTTTTCCCGCTACAAGATGGCCCTAGACGTGTATCGGCCTA
TCGCACCCCTTGACCGAGTCATCACGAGCCGTAGACATCAATTGTGGCGG
CGTATCAGCGTATAAAGGACCTAGCTGGATAGGGTCACTGGTTCCACACA
ATGTTTCATCCATTTGGATTTGGCGGCAGGCGTTCGCGACGCAAGCGACT
CGGTTGGAAACCCTGGTGGCCGGGAAGAAGTGCGAAGGTTACATGACCGA
CTTGATGACGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1583615..1588777-

>mRNA_P-fluviatile_contig14.2181.1 ID=mRNA_P-fluviatile_contig14.2181.1|Name=mRNA_P-fluviatile_contig14.2181.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=336bp|location=Sequence derived from alignment at P-fluviatile_contig14:1583615..1588777- (Porterinema fluviatile SAG_2381)
CGCCCGGCCAAGGAAGCGAAGGCGGCGGCGAACACGATGCACGGGAACAT
CGTCAACTGCTGGGCCGCAGCAACAAACAAGCGGCGCCCGGCCAAGGAAG
CGAAGGCGGCGGCGAACACGATGCACGGGAACATCGTCAACTGCTGGGCC
GCAGCAACAAACAAGCGGGCGTTCGCGACGCAAGCGACTCGGTTGGAAAC
CCTGGTGGCCGGGAAGAAGTGCGAAGGTTACATGACCGACTTGATGACGT
GAGCGTTCGCGACGCAAGCGACTCGGTTGGAAACCCTGGTGGCCGGGAAG
AAGTGCGAAGGTTACATGACCGACTTGATGACGTGA
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