mRNA_P-fluviatile_contig14.2164.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2164.1
Unique NamemRNA_P-fluviatile_contig14.2164.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.010e-66
Identity = 119/185 (64.32%), Postives = 130/185 (70.27%), Query Frame = 1
Query:   61 LVPIEVLEKGFEGDIRLWTVAGLRTFNMYRLISDRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNR------------------------------------YGMHFMLFVGVDSENRTVVFAQGFFS 507
            +VP E LE  F+GDIR WT+AGL+ F+MYRLIS+ +KPLQLGEPGRQKV       QRE + TPTDALDL+SELKD AGCYVKYDTD LHRLKHVFWSTGQQQV ARQWGGIVLQDNTALTNR                                    YGMHFMLF+GVDSEN+TVVFAQGFFS
Sbjct:    1 MVPGEDLEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKV-------QRECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFS 178          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.440e-35
Identity = 78/171 (45.61%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    1 VCLTHVDGCTSEPTAKAKKN--LVPIEVLEKGFEGDIRLWTVAGLRTFNMYRLISDRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            V L H   C  +  AK  K+  +VP+E LEK +  DI+  T+ G+R F MYR I + +KP +LG  G +KVRNM  KV R  + + TDAL+L+++L +     VK+++D  H L+ + W++ +Q + AR +GGIV+QDNT L NRY     LFVGVDSEN+T +FAQG  S
Sbjct:  726 VNLEHHADCEMQHVAKKHKDDSVVPLEELEK-WADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRGRWASKTDALELVADL-ERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLS 894          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.900e-28
Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  142 MYRLISDRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            MYR I++ +KP +LG  G +KVRNM  KV  EL+ +  DAL+L++EL +     VK++ D  + L+ + W++ +Q + AR +GG+V+QDNT LTNRY     LFVGVDSEN+T VFAQGFFS
Sbjct:    1 MYRCIAESIKPQKLGPRGARKVRNMSRKVTGELWASSGDALELVAEL-ERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFS 121          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: UPI001C720B58 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C720B58)

HSP 1 Score: 65.5 bits (158), Expect = 1.840e-9
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  208 RNMVAKVQRELFYTPTDALDL-ISELKDTAGCYVKY-DTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            RN + K +       +DAL++    ++D    +V Y D D+  RL++VFW+    + +   +G +VL+D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  204 RNYIDKARFLKLGRGSDALNVYFKRMRDQNDGFVSYMDVDDDERLRNVFWADVPSRTAYEYFGDVVLKDTTYLTNRYGMPFAPFVGVNHHGQSILFGAGLLS 305          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: UPI001C717DE7 (protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C717DE7)

HSP 1 Score: 65.5 bits (158), Expect = 2.110e-9
Identity = 38/121 (31.40%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  145 YRLISDRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            YR   D+ + L+LG  G   +R+  A++Q +                   G +   D D+  RLK+VFW+  + + + + +G +V  D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  267 YRNYIDKARYLRLGAGGAGALRDYFARMQYK-----------------NPGFFALMDLDDDGRLKNVFWADPRSRAAYQDFGDVVTFDTTYLTNRYGMPFAPFVGVNHHRQSILFGAGLIS 370          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: A0A2I4FHD7_JUGRE (Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4FHD7_JUGRE)

HSP 1 Score: 65.5 bits (158), Expect = 2.220e-9
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = 1
Query:  160 DRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            D+ + L+LG+ G   +R    ++Q +                   G Y   D D+  RLK+VFW+ G+ + +   +G +V  D T LTNRYGM F  FVGV+   +++ F  G  S
Sbjct:   30 DKARVLRLGKGGADALRQYFERMQYK-----------------NDGFYSSMDIDDEGRLKNVFWADGRSRAAYGYFGDVVTFDTTYLTNRYGMSFAPFVGVNHHGQSIFFGAGLIS 128          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: UPI001C71A331 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71A331)

HSP 1 Score: 65.5 bits (158), Expect = 2.330e-9
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  160 DRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            D+ + L+LG+ G +  R   A++Q +                   G +   D D+  RLK+VFW+  + + + + WG +V  D T LTNRYGM F  FVGV+   ++++   G  S
Sbjct:  324 DKARHLRLGKGGAEAHRQYFARMQYK-----------------NDGFFSDIDHDDDGRLKNVFWANARSRAAYKYWGDVVTFDTTYLTNRYGMPFAPFVGVNHHGQSILLGAGLIS 422          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: UPI001C71BFED (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71BFED)

HSP 1 Score: 64.7 bits (156), Expect = 4.920e-9
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 1
Query:  160 DRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            D+++ L+LG  G   +R+  A++Q +                   G +   D D+  RLK+VFW+  + + + + +G +V  D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  362 DKVRHLRLGAGGAGALRDYFARMQYK-----------------NPGFFALIDLDDDGRLKNVFWADPRSRAAYQDFGDVVTFDTTYLTNRYGMPFAPFVGVNHHGKSILFGAGLIS 460          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: UPI001B7F65BE (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7F65BE)

HSP 1 Score: 63.5 bits (153), Expect = 5.060e-9
Identity = 37/116 (31.90%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  160 DRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            D+ K LQLG+ G   ++    ++Q +                   G +   D D+  RLK+VFW+  + + S + +G +V  D T LTNRYGM F LFVGV+   ++++   G  S
Sbjct:   48 DKTKHLQLGKGGTGALQEYFLRMQYK-----------------NLGFFALMDLDDDGRLKNVFWADPRSRASYQYFGDVVTFDTTYLTNRYGMSFALFVGVNHHIQSILLGAGLIS 146          
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Match: UPI001BF5887B (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF5887B)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-8
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  175 LQLGEPGRQKVRNMVAKVQR-ELFYTPTDAL-DLISELKDTAGCYVKY-DTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 507
            L+L +   +  RN + K +   L    +DAL +    ++D    +V Y D D+  RL++VFW+  + + +   +G +V  D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  119 LELNDRAEKDCRNYIDKARYLRLGKGGSDALNEYFKRMRDQNDGFVFYMDVDDDGRLRNVFWADARSRAAYEYFGDVVSFDTTYLTNRYGMPFAPFVGVNHHGQSILFGAGLLS 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE4.010e-6664.32SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE1.440e-3545.61SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI1.900e-2850.82Putative far-red impaired response protein n=1 Tax... [more]
UPI001C720B581.840e-935.29protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya... [more]
UPI001C717DE72.110e-931.40protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=C... [more]
A0A2I4FHD7_JUGRE2.220e-931.90Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regi... [more]
UPI001C71A3312.330e-931.03protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya... [more]
UPI001C71BFED4.920e-931.03protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya... [more]
UPI001B7F65BE5.060e-931.90protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Jugla... [more]
UPI001BF5887B1.560e-833.33Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1429946..1430919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size509
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2164.1prot_P-fluviatile_contig14.2164.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1429946..1430919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.616044-CDS-P-fluviatile_contig14:1429945..14301491622815613.616044-CDS-P-fluviatile_contig14:1429945..1430149Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1429946..1430149 +
1693562438.551925-CDS-P-fluviatile_contig14:1429945..14301491693562438.551925-CDS-P-fluviatile_contig14:1429945..1430149Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1429946..1430149 +
1622815613.6267667-CDS-P-fluviatile_contig14:1430353..14305771622815613.6267667-CDS-P-fluviatile_contig14:1430353..1430577Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1430354..1430577 +
1693562441.4653249-CDS-P-fluviatile_contig14:1430353..14305771693562441.4653249-CDS-P-fluviatile_contig14:1430353..1430577Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1430354..1430577 +
1622815613.6378632-CDS-P-fluviatile_contig14:1430840..14309191622815613.6378632-CDS-P-fluviatile_contig14:1430840..1430919Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1430841..1430919 +
1693562450.583365-CDS-P-fluviatile_contig14:1430840..14309191693562450.583365-CDS-P-fluviatile_contig14:1430840..1430919Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1430841..1430919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2164.1

>prot_P-fluviatile_contig14.2164.1 ID=prot_P-fluviatile_contig14.2164.1|Name=mRNA_P-fluviatile_contig14.2164.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=169bp
VCLTHVDGCTSEPTAKAKKNLVPIEVLEKGFEGDIRLWTVAGLRTFNMYR
LISDRLKPLQLGEPGRQKVRNMVAKVQRELFYTPTDALDLISELKDTAGC
YVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFML
FVGVDSENRTVVFAQGFFS
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mRNA from alignment at P-fluviatile_contig14:1429946..1430919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2164.1 ID=mRNA_P-fluviatile_contig14.2164.1|Name=mRNA_P-fluviatile_contig14.2164.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=974bp|location=Sequence derived from alignment at P-fluviatile_contig14:1429946..1430919+ (Porterinema fluviatile SAG_2381)
GTCTGCCTTACGCATGTTGATGGCTGTACGTCGGAGCCGACTGCAAAGGC GAAGAAGAACCTGGTCCCCATTGAAGTCCTTGAAAAGGGTTTCGAAGGCG ATATCCGACTTTGGACGGTGGCGGGGCTGAGAACGTTTAACATGTACAGG CTGATTTCCGATCGTTTGAAGCCCCTTCAGCTTGGAGAGCCCGGTCGACA GAAGGTGCGCAAATCGTGTGACGTATTCGTACCGTTTGTTCATGGTCGAG GGGTGTGCTTCCGTTTTTTCGTGGACGTCGCAAACGGGGGCTTTGATGGA GTACTGCCGGAGAATTGAAAGTTGTGCGTTGTCGCTGCATGTTTTGACAT TCTTCGTCTTCCTTCGACATGCCGGCGCAACGTTTCTGAACATGGAATTG GGTCATAGGTCAGGAACATGGTCGCGAAGGTGCAGCGCGAGCTCTTCTAT ACGCCGACCGACGCCCTCGATTTGATATCTGAGTTGAAAGACACGGCTGG TTGCTACGTGAAGTATGACACGGACGAGCTGCATCGACTGAAGCACGTCT TTTGGTCGACGGGTCAGCAGCAAGTCTCCGCCCGCCAGTGGGGCGGAATC GTCCTTCAAGACAACACTGCTCTGACGAACAGGTGCGCGTTTTCTTGTTT TCTTTCTCGCGCTGAACCGTCCCCATTACGAAACGCAACGAACCGAAAAT CGGTCGTGGTGTAGGCTCGCGGTGCAAGAAGAGGGAAGAACGATCCGTTG GCCTTGGCGTCGTAGCCCCATGAAACCAATACACGGCTTGTCTTTGTTGG TGTTTCGGTGTCGGCACCGTCATGACGCCTGCTGGCAGTACCGCTTCCAT AAATTTAGCGGTACAACTCCTGACCTGCATTCTGACGTCTTGCAGGTATG GCATGCATTTCATGCTGTTCGTCGGAGTCGACTCGGAGAACAGAACGGTC GTCTTTGCGCAGGGGTTCTTCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1429946..1430919+

>mRNA_P-fluviatile_contig14.2164.1 ID=mRNA_P-fluviatile_contig14.2164.1|Name=mRNA_P-fluviatile_contig14.2164.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1014bp|location=Sequence derived from alignment at P-fluviatile_contig14:1429946..1430919+ (Porterinema fluviatile SAG_2381)
GTCTGCCTTACGCATGTTGATGGCTGTACGTCGGAGCCGACTGCAAAGGC
GAAGAAGAACCTGGTCCCCATTGAAGTCCTTGAAAAGGGTTTCGAAGGCG
ATATCCGACTTTGGACGGTGGCGGGGCTGAGAACGTTTAACATGTACAGG
CTGATTTCCGATCGTTTGAAGCCCCTTCAGCTTGGAGAGCCCGGTCGACA
GAAGGTCTGCCTTACGCATGTTGATGGCTGTACGTCGGAGCCGACTGCAA
AGGCGAAGAAGAACCTGGTCCCCATTGAAGTCCTTGAAAAGGGTTTCGAA
GGCGATATCCGACTTTGGACGGTGGCGGGGCTGAGAACGTTTAACATGTA
CAGGCTGATTTCCGATCGTTTGAAGCCCCTTCAGCTTGGAGAGCCCGGTC
GACAGAAGGTCAGGAACATGGTCGCGAAGGTGCAGCGCGAGCTCTTCTAT
ACGCCGACCGACGCCCTCGATTTGATATCTGAGTTGAAAGACACGGCTGG
TTGCTACGTGAAGTATGACACGGACGAGCTGCATCGACTGAAGCACGTCT
TTTGGTCGACGGGTCAGCAGCAAGTCTCCGCCCGCCAGTGGGGCGGAATC
GTCCTTCAAGACAACACTGCTCTGACGAACAGGTCAGGAACATGGTCGCG
AAGGTGCAGCGCGAGCTCTTCTATACGCCGACCGACGCCCTCGATTTGAT
ATCTGAGTTGAAAGACACGGCTGGTTGCTACGTGAAGTATGACACGGACG
AGCTGCATCGACTGAAGCACGTCTTTTGGTCGACGGGTCAGCAGCAAGTC
TCCGCCCGCCAGTGGGGCGGAATCGTCCTTCAAGACAACACTGCTCTGAC
GAACAGGTATGGCATGCATTTCATGCTGTTCGTCGGAGTCGACTCGGAGA
ACAGAACGGTCGTCTTTGCGCAGGGGTTCTTCTCCGTATGGCATGCATTT
CATGCTGTTCGTCGGAGTCGACTCGGAGAACAGAACGGTCGTCTTTGCGC
AGGGGTTCTTCTCC
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