mRNA_P-fluviatile_contig14.2147.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2147.1
Unique NamemRNA_P-fluviatile_contig14.2147.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2147.1 vs. uniprot
Match: A0A6H5JDR1_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDR1_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.570e-55
Identity = 104/182 (57.14%), Postives = 124/182 (68.13%), Query Frame = 2 
Query: 1949 AAAVSRSTVCAVSIFDSQVKDISLSIEELP-APVGGGLEWEPCPVVHILGVPLMIKKAQACGCQVCVGSDSNIPEARHQVATRLAIEPHNGLAPPRWQGGPHNHLGTTIAARSDGQGFMGQDWALLDDYISNNLSDVWGMDPYERDRQLPRVCNSQAYARFLA------DRSEEAPYADYMG 2473
            AA   RSTV  VSIFD QV +  +S+EELP A   G   WE CPVV++LGVPL I K   C C +C+  +S IPE R+QVATRLAIEPHNGLAPP+WQGGPHNHLGT   AR D + F  +DW +LDDYI N +  VWGM+P ER + LPRVC+SQA+AR+ A      +  EEA Y    G
Sbjct:   58 AALQGRSTVGIVSIFDQQVSNSIMSLEELPTAGAPGAQGWELCPVVNMLGVPLAIMKVCPCACHICLRGNSQIPEPRNQVATRLAIEPHNGLAPPKWQGGPHNHLGTVAVARMDLRDFTVEDWRVLDDYICNTIFGVWGMEPSERIQLLPRVCSSQAFARYTAAAGRSQEDEEEAAYGASFG 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDR1_9PHAE1.570e-5557.14MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1330756..1336058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, MYND-type
Ec32 orthologEc-01_006560.1
Exons4
Model size4146
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2147.1prot_P-fluviatile_contig14.2147.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1332596..1334388 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.8815496-UTR-P-fluviatile_contig14:1330755..13325951622815611.8815496-UTR-P-fluviatile_contig14:1330755..1332595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1330756..1332595 +
1693562409.9131577-UTR-P-fluviatile_contig14:1330755..13325951693562409.9131577-UTR-P-fluviatile_contig14:1330755..1332595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1330756..1332595 +
1622815611.9590495-UTR-P-fluviatile_contig14:1334388..13360581622815611.9590495-UTR-P-fluviatile_contig14:1334388..1336058Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1334389..1336058 +
1693562414.2874827-UTR-P-fluviatile_contig14:1334388..13360581693562414.2874827-UTR-P-fluviatile_contig14:1334388..1336058Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1334389..1336058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.8966265-CDS-P-fluviatile_contig14:1332595..13329401622815611.8966265-CDS-P-fluviatile_contig14:1332595..1332940Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1332596..1332940 +
1693562411.6887467-CDS-P-fluviatile_contig14:1332595..13329401693562411.6887467-CDS-P-fluviatile_contig14:1332595..1332940Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1332596..1332940 +
1622815611.9096808-CDS-P-fluviatile_contig14:1333472..13336041622815611.9096808-CDS-P-fluviatile_contig14:1333472..1333604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1333473..1333604 +
1693562414.2496443-CDS-P-fluviatile_contig14:1333472..13336041693562414.2496443-CDS-P-fluviatile_contig14:1333472..1333604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1333473..1333604 +
1622815611.9344242-CDS-P-fluviatile_contig14:1333979..13340161622815611.9344242-CDS-P-fluviatile_contig14:1333979..1334016Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1333980..1334016 +
1693562414.2687333-CDS-P-fluviatile_contig14:1333979..13340161693562414.2687333-CDS-P-fluviatile_contig14:1333979..1334016Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1333980..1334016 +
1622815611.947175-CDS-P-fluviatile_contig14:1334266..13343881622815611.947175-CDS-P-fluviatile_contig14:1334266..1334388Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1334267..1334388 +
1693562414.279506-CDS-P-fluviatile_contig14:1334266..13343881693562414.279506-CDS-P-fluviatile_contig14:1334266..1334388Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1334267..1334388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2147.1

>prot_P-fluviatile_contig14.2147.1 ID=prot_P-fluviatile_contig14.2147.1|Name=mRNA_P-fluviatile_contig14.2147.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=212bp
MWEGNVQRVCLRFQCGASCTARLLPPVSFAHPAPAAAAAVSRSTVCAVSI
FDSQVKDISLSIEELPAPVGGGLEWEPCPVVHILGVPLMIKKAQACGCQV
CVGSDSNIPEARHQVATRLAIEPHNGLAPPRWQGGPHNHLGTTIAARSDG
QGFMGQDWALLDDYISNNLSDVWGMDPYERDRQLPRVCNSQAYARFLADR
SEEAPYADYMG*
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mRNA from alignment at P-fluviatile_contig14:1330756..1336058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2147.1 ID=mRNA_P-fluviatile_contig14.2147.1|Name=mRNA_P-fluviatile_contig14.2147.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5303bp|location=Sequence derived from alignment at P-fluviatile_contig14:1330756..1336058+ (Porterinema fluviatile SAG_2381)
GTCTGTGCGGTACTGCTCGAGGGACTGCCAACGCCGGGACTGGTCTTTTG
GCCACAGGGATAACTGCGCTTTTTTGGCCCAACAACGCGCCTCGGCTATG
CGGGTGGATCTACCTGAACTCGGGTAAGGGAGACGGCATACATTCGCCAA
TTGACATCACATGCAGATCTGTGTACTTTCGGAGCGCAATCTTTCCGGCG
CTTACAATCGGAAATACGCGAGTAATCAGGTCAGCAGCCTCGGAGATCTG
CACCAGGGCAGTGAAGTACAGGTCGCGTTGTGTTCCGATCGCGGAGTGAG
CCGCACTCTACACTCACAGAGATCGAAGACTGTTTTCCATGTGTGAAGCG
CGCACACTTCTTGCCACACCGTCGGGGGTTCGGGTCAGGTCCATACATCA
AACCTCTGGAGACAGGGATATTCCTGACTCTCTCTCACCAGCCAGCGGTG
CATACCAGGTGTGGAGAAAGAGACAGAGGAAGTACTCCTTCCCATGTTGC
AGCTTTGAGAAGTCAGACGAATCAGCACACACCCTTTTTGAAACGAAAAA
TAAAGGCAGGGAGATGGACCTGAGACCCGACGCAAAATGAGAAAGCGGAG
AGCCAGTTCCTCACGAGACGAACGAAAATGCACAGTTTTGCCTTCCAAAA
AAAAATGCACGCGTTGCCATGTATGTAGTCTATGTAAAGTGCTTTCGAAA
ATAGCCACGACGGCCTTGACCTGGTAGCAGCAGCAGCAGCAGCAGCAGCA
GTAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCTATCGCCCTTCCACC
GCGAAAAATGACAGCGCTCCATCTTCCCATTTGTTGTGCGCTGTGAAACC
TATTATAGTCTACGGAGGATTTACCGAATTTCTAGCGACAGTTGGGGGGA
AGGCGAATCCAACCTTACTGCTGAGGTGCGCCCTGCTCAATTTAACAAGG
CGTTGTGTGTGTCATTGATGCTCTGGCTATTTTAATGGTCAGACTTGCGG
CGGCCGAAACGGAATTTTTCTGGGTGGTTGTGGGGTAGGTTGCGGGCTGC
ACACACAACAGGTTCAGTATTCCGTTTGTATTCCGACCTCAGATTTCATT
ACTCGTTATTTCCGAAGTGCTTCGAGGTATGCAGTGCGAGTCAAGGTTTT
CATTTTGCGGATAACAATTTTGGATACCAGCTCCCCCCCACGAACACCCC
GTCAGAGGATCAGATTTCAAGATCTGTCAGCGTCGCCATGTAGACTATGG
CAAAAAAAGGCATGGAGAATTTGGTTGACGTCCACTACCAAGTGTTCCCC
CTGTGCCGTGATATCCCATCCGTGCGCCCCTCCATTTCGACGCGAGGTTT
CGAATGTCCCAACCCCCTCCTATACGGTATTTTAAGTTTGGGGCCTATTT
GATAGTTATTAAGAACTTTATCTGCGCATAGCGCACAGATCCCTGTGTGA
GCAAAGTCCAGGGTGACCGGAAGTTGGTATGCATGTGTGGCGCACCATAT
AGGTCGAAGACAAGACCCACCCGTATCTGTTCAGGGATATGTGACACGCG
CGACGTGTCATCTGTCTTTCTCCGTATCTGAATGGCCTGTATTCATTCGC
CATGCGCCGCACCTTCATTCTAGTGGTCATCTTTTGCCCGTAAACCGCAC
ATTTCGTGTTAAGAATACCGTCACCTCCATTCACTTTTGCCGTTGCCCCC
TCGACTTCCGATCTCTCTCAAGCAGCACTTAAAGATAAATCTGCGGTTTT
GTTTTTTCCTTTTTCAGATTTCAGGGGGGCCCTGTCAGGTTAGCCTCCCT
GACCACGACAGGTTTCGAGTAGATAAACAATGCACGATCGATGTGGGAGG
GAAACGTCCAAAGAGTCTGCCTACGCTTTCAGTGTGGAGCCAGCTGTACC
GCGCGCCTCCTTCCTCCTGTCTCGTTCGCCCACCCCGCTCCCGCCGCCGC
CGCCGCTGTTTCAAGATCCACGGTTTGCGCCGTGAGTATCTTCGATTCCC
AGGTGAAGGACATTTCCCTGAGCATTGAGGAGCTGCCAGCGCCGGTCGGG
GGCGGTCTCGAGTGGGAGCCCTGCCCGGTGGTTCATATCTTAGGCGTGCC
CCTCATGATCAAGAAGGCCCAGGCCTGCGGATGCCAGGTTTGCGTCGGAA
GCGACTCGAACATCCCCGAGGCGCGGCACCAAGTGGTGAGCGACTGTCGT
GAGAAAAAATGCGCAGAAAGATGCCGAAGCGGCGCGCGCTCAGCCGCAAA
GTCGTGCGCGAGACAGCACCAGCTTCTCTTTTGTTTGTTGCAGCGTGTGC
GAGAGTGACCGTCACGTGTCTGTGATTCTCCCGCTGGGTGGCCGTCTTTT
TCCCAGTTTCGTCGTCAAATTCAGTCTCTTGAAGCTTCGAACACAATCCA
CCAAAAGGCCACAAACGAGGACCTCGACAATTAACAAAATACGGTCCTGA
GAATTTGAAAGTTCTTGAGATATTACAGCACAAACGCGAAGGGAGGAAAA
ATGCGCGCGCGGATGAAGGCTAGATGGCTGCCGCAGCTTGACGATGTAAG
GTTTTGCCTGCTGCTTCTTTGCCTGGTCGGAAGTTCAGCCGCTCTTCTCT
GCTTCAAGAATTTTCTTACTCATTCCATCAAATCCTGCTGCTGCTGCTGC
ATCTTCGTCTCCTACCTCTGCCTGACGGCTCGCATTCATGGCGTGTCTTT
TTTAATCACTGCTCCAGGCTACGAGGTTGGCCATCGAGCCCCACAACGGT
CTGGCCCCGCCGAGGTGGCAGGGTGGCCCACACAACCATCTCGGGACTAC
CATCGCGGCGAGGTCGGACGGTCAAGGTTTCATGGGCCAGGACTGGGCGG
TGAGTCCCGCGGGGATAGATGGGATGCGGTTGCGAGCTGAGCCTGTGGGT
AAGCAGGCGTGTGCACTGTGTGTGGTAGGGCGAAACAACTCAATTGATTT
TAATCCCTCCGCTCCGTGCTTGCCTGCGCCGAGTCCACTGCTCTCTTTCA
CCCACGAAGAACATCTTTGTGCTCGTCCTTTCCACCGATTATTGCTCTTG
ACTCCTGCGGGTACATTGCATCAGAACCTCGATCGGGTTGTTTTTGCATT
CGAAAACCGTTGCCTCGCGGGTTGTAATCTGCCTGCTGTGCCCCCGCGAT
GTTTTCGCACGGAGTTTTTTTTTCACCGCCTCCCCTTCGTCCCTTTTCCC
TCCGCATCGTAACCTGCATCCCAGCTCCTCGACGACTACATCAGCAACAA
CCTCTCCGATGGTGAGCTATTCGCCCTGGTTCGTAGTGATCTTGTCGTGT
TCATATTGCTTCCGTTGGAGGCCGACCACAAGGAACGGATTCAACTGCTT
TCCTTTGCCATCTTTTCTCCCAGGCTAAGTTAAAGGTCGGTTGCAGTCGG
TGAAACAACGCTAACTTGTGCGGGCGACCCGCCCGGTGTAGATGCTACCG
CGTGCGGTAGCGCTCCAAGTATGGAATAGCGACACCCCCCCCCTCCTCCT
CTGTCTTGCAGTGTGGGGCATGGACCCCTACGAGCGCGACCGCCAGCTCC
CGCGCGTGTGCAACAGCCAGGCGTACGCTCGCTTCTTGGCTGACAGGAGC
GAGGAGGCCCCCTACGCTGACTACATGGGCTGATGCAGCGCGGCGCGGCA
CAGCATGGTTTGGGGTGGGCGTACGATACACGCTCTGGCGTCCACTGCAG
CATGAAGAAAACGTATGTTTTCTGTCATCATTCTTGTTTTTGTTGTTGAT
GATGTTCCTTATTTTTCTCTCTGGCAGTGGGGTCCGCGACTCAGTGATAA
TTTTGCCCGGTTTTGTTCGTCGCTGTTTGCGTGGAGCGGTGGTCGGGTAA
GGTGTAGAAGTAATCAGGGGGGAGTGATCACAGCTGTCGTTTCTTTCAAG
GGATGATATAGATGGTGGTATGTGCTCATGCATGCTTCCTCAACTCACTG
GAAATGGCTTGATTATCAACCCAACGAAGCCCACGCAGCTGCTATAGTGG
CGGAAAAACCCAGGAAGGGGGCGAGGCTGCGCGGAAGAAGCGGCAATTTT
GTGCGTGGACCGAGTGCCGGGTCGTGCCTTTCTGCTGTGATGGCGTGTGC
TGCTACGAGGAAATGATTTCCAAGGTATGATTAGGTTCGATGAATTCATA
TTTACCCCCAACAGAGAAAGTTGGATAGCGATGGGGTGGGATTGCCGCCC
GGTGGCATGGGCGATCGGCGAAATGGGGGGGATTCGGACGCCGGGTCTCG
GACAACGGTTGAGCTTGTTTAGAATCAACGGGTAATAGGCGACCTTTTTT
GTGTCCTCGGAACTTGTGTCTTTCTGGTTTGGTTTTAGCCGCCGTTGCAG
GGTTTTGTTGTGCACGGCAGAAAGTGAAGAGTACCGGGGAACACCCGGTC
GTGATAGTTTGAATTTTTGCGTTCGATTTATTGCTCTTTCGTTTTTGACG
TGAATTTATGGAGTGAGCGGGATTTTTTGGTTCCTAGATCCTCGCCACGT
TTTGCATGCAGAAATGGCCCTTGGTTCGTTTGTTCATTTCTTGATTACGA
TTGAAGTTCGGTCTTTCTCCCTTGCGTGGGTACTCGTTATCACCAATTGG
GAAGTGTTGAGGACCTGGTTTACGATTTTTCAAGGCCAAGACGACGGCCA
CATCGTTGGGTGCTATTTTATTGCTGGTGTAGGCTGCTGCTCTTGTGCCA
AGTCGCAGTGGCACCAGAAGAATTTTCTCGTCGTACGTATCACCTAGAGA
TCTCGTCGTTTTTTACGTCACAGAGTTGGGGGCCGTTTGAGCTTGTAATG
AAAGTGAAGCTGCTGTCGTTTAGACTTGGAAGATTATGAGGAAAGCAAGA
GAGAGCGCTTAAGCGAGGCTCCTCTGCGCTGGGTCGTGTGTTAGCGTGTG
TGCCGTCAGACTTCACTTTGAATTCGCGAACGAGTAAATCTAAGCTCTTG
CCTTGGCTTGGTGAGACATCATCCAATGGAACCTCGAGATTCCCCGAATG
AGGGGCGATTTCAAAATGTGGGAGTGAGACTCTAAAGAGCATCATCTGAT
TGTTGTTCTGTGCGTAGCAAAGTGTCCATCATGATTGGATTTGAAACATG
AGAACAACTACTCTGTCTGCTCACGATTTAGGTGCGACCACGCTGCAAAT
ACTTCTGGAGATGAGGCAAATGGAGTTCGGCGTATCTGTTGTTGCCAGAA
ATGGTTCCTGAATTTTCGGAAGGTCGATTGGTTCAATGATATCGAGCACC
TTGCACACTCTCATTTTCCATGTGTGTGTAGGAGGCCTGGTAGAAAAGTT
CAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1330756..1336058+

>mRNA_P-fluviatile_contig14.2147.1 ID=mRNA_P-fluviatile_contig14.2147.1|Name=mRNA_P-fluviatile_contig14.2147.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1272bp|location=Sequence derived from alignment at P-fluviatile_contig14:1330756..1336058+ (Porterinema fluviatile SAG_2381)
ATGTGGGAGGGAAACGTCCAAAGAGTCTGCCTACGCTTTCAGTGTGGAGC
CAGCTGTACCGCGCGCCTCCTTCCTCCTGTCTCGTTCGCCCACCCCGCTC
CCGCCGCCGCCGCCGCTGTTTCAAGATCCACGGTTTGCGCCGTGAGTATC
TTCGATTCCCAGGTGAAGGACATTTCCCTGAGCATTGAGGAGCTGCCAGC
GCCGGTCGGGGGCGGTCTCGAGTGGGAGCCCTGCCCGGTGGTTCATATCT
TAGGCGTGCCCCTCATGATCAAGAAGGCCCAGGCCTGCGGATGCCAGGTT
TGCGTCGGAAGCGACTCGAACATCCCCGAGGCGCGGCACCAAGTGATGTG
GGAGGGAAACGTCCAAAGAGTCTGCCTACGCTTTCAGTGTGGAGCCAGCT
GTACCGCGCGCCTCCTTCCTCCTGTCTCGTTCGCCCACCCCGCTCCCGCC
GCCGCCGCCGCTGTTTCAAGATCCACGGTTTGCGCCGTGAGTATCTTCGA
TTCCCAGGTGAAGGACATTTCCCTGAGCATTGAGGAGCTGCCAGCGCCGG
TCGGGGGCGGTCTCGAGTGGGAGCCCTGCCCGGTGGTTCATATCTTAGGC
GTGCCCCTCATGATCAAGAAGGCCCAGGCCTGCGGATGCCAGGTTTGCGT
CGGAAGCGACTCGAACATCCCCGAGGCGCGGCACCAAGTGGCTACGAGGT
TGGCCATCGAGCCCCACAACGGTCTGGCCCCGCCGAGGTGGCAGGGTGGC
CCACACAACCATCTCGGGACTACCATCGCGGCGAGGTCGGACGGTCAAGG
TTTCATGGGCCAGGACTGGGCGGCTACGAGGTTGGCCATCGAGCCCCACA
ACGGTCTGGCCCCGCCGAGGTGGCAGGGTGGCCCACACAACCATCTCGGG
ACTACCATCGCGGCGAGGTCGGACGGTCAAGGTTTCATGGGCCAGGACTG
GGCGCTCCTCGACGACTACATCAGCAACAACCTCTCCGATGCTCCTCGAC
GACTACATCAGCAACAACCTCTCCGATGTGTGGGGCATGGACCCCTACGA
GCGCGACCGCCAGCTCCCGCGCGTGTGCAACAGCCAGGCGTACGCTCGCT
TCTTGGCTGACAGGAGCGAGGAGGCCCCCTACGCTGACTACATGGGCTGA
TGTGGGGCATGGACCCCTACGAGCGCGACCGCCAGCTCCCGCGCGTGTGC
AACAGCCAGGCGTACGCTCGCTTCTTGGCTGACAGGAGCGAGGAGGCCCC
CTACGCTGACTACATGGGCTGA
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