mRNA_P-fluviatile_contig14.2145.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2145.1
Unique NamemRNA_P-fluviatile_contig14.2145.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 6.600e-76
Identity = 176/335 (52.54%), Postives = 217/335 (64.78%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCPS-LEILARAK-AQPARKPDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSD-DDGYVSVEP--AAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGVPPRRLVKLGYVDCKNLPAMDKEYRRAMQRR 1041
            M T +IK++FQGASRDV+V AP +LA LQ AIA+ F  +LP R+  GEAAKD+DLSFTYKDP+GD+IVFD+DSEL LA+RLCPS LEI A  K ++PA+KPDPE +LY+ AARNLREYNGVPSMT  KLIKTLAFLKL P+RLVKQGLAP+VLLARM A A+      +V   DGK       N+   ESVAA +  MSV      E+DK + +DG+VS E   +AAAV  +AK                                  +  A   +K   H AF+  GI+LRPREV+PLL+AL V P RL KLG VD K+L AM +  ++A  +R
Sbjct:   19 MTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK------NNEDLAESVAAGMELMSV------EDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEEN----------------------NDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKR 319
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 1.640e-74
Identity = 169/322 (52.48%), Postives = 204/322 (63.35%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCP-SLEILARAKA-QPARKPDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSD-DDGYVSVEPAAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGVPPRRLVKLGYVDCKNLPAM 1008
            M T +IK++FQG SRDV+V  P TLA LQ AIA  F  +LP R+  GEAAKD+DLSFTYKDP+GD+IVFD+DSEL LA+RLCP SLEI A  K  +PA KPDPE +LY+ AARNLREYNGVPSMTP KL+KTLAFL+L P+RLVKQGLAP+VLLARM A A+      +V   DGK       N+   ESVAA +  MSV      E+DK + +DG+VSVEPA  +   +                                       A   +K   H AF+A GI+LRPREV+PLL+AL V P RL KLG V+ K+L AM
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK------NNEDLAESVAAGMELMSV------EDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAV------------------------------APEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAM 280
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.740e-74
Identity = 171/321 (53.27%), Postives = 204/321 (63.55%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCP-SLEILARAKAQPA-RKPDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSDDDGYVSVEPAAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGVPPRRLVKLGYVDCKNLPAM 1008
            M T +IK++FQGASRDV+V  P  LA LQ AIA+ F V+LP R+  GEAA D+DLSFTYKDP+GD+IVFD++SEL LALRLCP SLEI A  K   A R PD E KLY+ AARNLREYNGVPSMTP KL+KTLAFLKL P+RLVKQGLAP+VLLARM A A+      +V   DGK       N+   ESVAA +  MSV+   DG+  K  +DG+VSVEPA  +  A+                                    +  A  A+K   H AF+A GI+LRPREV+PLL+AL V P RL KLG V  K+L AM
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK------NNEDLAESVAAGMELMSVE---DGK--KEWNDGFVSVEPAEISFPANDNEEK-------------------------------NDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAM 297
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BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 2.200e-73
Identity = 172/333 (51.65%), Postives = 208/333 (62.46%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCP-SLEILARAKAQPARK-PDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSD-DDGYVSVEPAAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGVPPRRLVKLGYVDCKNLPAMDKEYRRAMQRR 1041
            M T +IK++FQGASRDV V AP TLA LQ AIA+ F V+LP R+  GEAAKD+DLSFTYKDP+GD+IVFD+DSEL LALRLCP SLEI A  K   A K PD E  LY+ AARNLREYNGVPSMTP KL+KTLAFLKL P+RLVKQGLAP++LLARM A  +      +V   DGK       N+   E VAA +  MSV      E+DK + +DG+VSVEPA  + S +                                       A   ++   H AF+A GI+LRPREV+PLL+AL V P RL KLG VD K+L AM +  ++A  +R
Sbjct:   28 MTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGK------NNEDLAEWVAAGMEFMSV------EDDKKEWNDGFVSVEPAETSSSDNGNEEENDDA------------------------------APEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKR 318
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 4.100e-72
Identity = 169/323 (52.32%), Postives = 203/323 (62.85%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCP-SLEILARAKA-QPARKPDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSDDDGYVSVEP--AAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGVPPRRLVKLGYVDCKNLPAM 1008
            M T +IK++FQG SR+V+V APFTLA LQ  IA+ F  +LP R+  GEA KD+DLSFTYKDP+GD+IVFD+DSEL LA+RLCP SLEI A  K  +P  KPDPE +LY+ AARNLREYNGVPSMT  KLIKTLAFLKL PRRLVKQGLAP+ LLARM A A+      +V   DG      E N+   ESVAA +  MSV+ D      K  ++G+VS +P  +AAAV  +AK                                     A   +K   H AF+A GI+LRPREV+PLL+AL V P RL KLG V+ K L AM
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLGDG------ENNEDLAESVAAGMELMSVEDDK-----KECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDA----------------------APEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAM 290
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 1.810e-71
Identity = 166/322 (51.55%), Postives = 202/322 (62.73%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCP-SLEILARAKAQPARK-PDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSD-DDGYVSVEPAAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGVPPRRLVKLGYVDCKNLPAM 1008
            M T +IK++FQGASRDV+V AP TLA LQ  IA+ F  +LP R+  GEAAKD+DLSFTYKDP+GD+IVFD+DSEL LA+RLCP SLEI A  K + A + PD E +LY+ AARNLREYNGVPSMTP KL+KTLAFLKL P+RLVKQGLAP+ LL RM A A+      +V   DGK       N+   ESVAA +  MS+      E+DK + +DG+VSVEPA  +   +                                       A   +K   H AF+A GI+LRPREV+PLL+AL V P RL KLG VD K+L AM
Sbjct:   17 MTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGK------NNEDLAESVAAGMELMSL------EDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAV------------------------------APEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 296
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 4.080e-67
Identity = 156/302 (51.66%), Postives = 188/302 (62.25%), Query Frame = 1 
Query:   52 MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAAKDSDLSFTYKDPEGDEIVFDQDSELTLALRLCPS-LEILARAK-AQPARKPDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKGDDDGEEDKSDDDGYVSVEPAAAAVSASAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGV 951
            M T +IK++FQGASRDV+V AP TL  LQ AIA+ F  +LP R+  GEAAKD+DLSFTYKDP+GD+IVFD+DSEL LA+RLCPS LEI A  K ++PA KPDPE +LY+ AARNLREYNGVPSMTP KLIKTLAFLKL P+RLVKQGLAP+VLLARM A A+      +V   DGK       N+   +SVAA +  MSV      E+ K  +DG+VS E  A A +A   A                                    A   +K   H AF+A GI+LRPRE   LLL + +
Sbjct:   16 MTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK------NNEDLADSVAAGMELMSV------EDKKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDA--------------------APEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.750e-6
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  364 LYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVL 504
            LY+ AARNLREY+GVPSMT   L KT+  L+L P RLV QGLAP+ +
Sbjct:   53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.020e-6
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:  301 SLEILARAKAQPARKPDPERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLLARMTAVASKETTSREVVSTDGKADGEEEMNDA 603
            S+     +K    R  +P   +++ AARNLREY+GVPS+TP  L  T+  L+L P RLV QGLAP++LL          T   +  STDG    E E   A
Sbjct:   20 SMTEFVTSKPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLK------GNSTAGVDADSTDGSGGFEAEEEQA 114
[Close]
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Match: D8LC36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC36_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 4.290e-6
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  364 LYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRVLL 507
            +YQ AARNLRE+  VPS+T   L KT+A L+L P RLV QGLAPR LL
Sbjct:   46 VYQAAARNLREFRRVPSLTAGGLEKTMALLQLRPARLVAQGLAPRDLL 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JQ17_9PHAE6.600e-7652.54PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI1.640e-7452.48PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE1.740e-7453.27PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE2.200e-7351.65PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE4.100e-7252.32PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI1.810e-7151.55PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI4.080e-6751.66PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KI70_9PHAE1.750e-663.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG1_9PHAE2.020e-640.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC36_ECTSI4.290e-664.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1294733..1300191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3013
Cds size1197
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2145.1prot_P-fluviatile_contig14.2145.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1296498..1300140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.3320012-UTR-P-fluviatile_contig14:1294732..12964971622815611.3320012-UTR-P-fluviatile_contig14:1294732..1296497Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1294733..1296497 -
1693562409.5079744-UTR-P-fluviatile_contig14:1294732..12964971693562409.5079744-UTR-P-fluviatile_contig14:1294732..1296497Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1294733..1296497 -
1622815611.368288-UTR-P-fluviatile_contig14:1300140..13001911622815611.368288-UTR-P-fluviatile_contig14:1300140..1300191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1300141..1300191 -
1693562409.5360162-UTR-P-fluviatile_contig14:1300140..13001911693562409.5360162-UTR-P-fluviatile_contig14:1300140..1300191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1300141..1300191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.3428903-CDS-P-fluviatile_contig14:1296497..12974121622815611.3428903-CDS-P-fluviatile_contig14:1296497..1297412Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1296498..1297412 -
1693562409.5175307-CDS-P-fluviatile_contig14:1296497..12974121693562409.5175307-CDS-P-fluviatile_contig14:1296497..1297412Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1296498..1297412 -
1622815611.3561761-CDS-P-fluviatile_contig14:1299858..13001401622815611.3561761-CDS-P-fluviatile_contig14:1299858..1300140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1299859..1300140 -
1693562409.5266144-CDS-P-fluviatile_contig14:1299858..13001401693562409.5266144-CDS-P-fluviatile_contig14:1299858..1300140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1299859..1300140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2145.1

>prot_P-fluviatile_contig14.2145.1 ID=prot_P-fluviatile_contig14.2145.1|Name=mRNA_P-fluviatile_contig14.2145.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=399bp
MATRTIKVSFQGASRDVDVSAPFTLAGLQQAIASKFSVDLPPRAGVGEAA
KDSDLSFTYKDPEGDEIVFDQDSELTLALRLCPSLEILARAKAQPARKPD
PERKLYQTAARNLREYNGVPSMTPAKLIKTLAFLKLGPRRLVKQGLAPRV
LLARMTAVASKETTSREVVSTDGKADGEEEMNDAPVESVAARVTPMSVKG
DDDGEEDKSDDDGYVSVEPAAAAVSASAKASPSEAVDDARAADNYSSSDT
DSDSATDGSGGSNSGGAAGAEKLFTHGAFVAAGIRLRPREVQPLLLALGV
PPRRLVKLGYVDCKNLPAMDKEYRRAMQRRDEMRNAMIGNRRGTDNAAGP
GAAGCCMWAPGGLRHWMGAAEDGQWHPCGRVMMGCLYGGPCPPPGAHA*
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mRNA from alignment at P-fluviatile_contig14:1294733..1300191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2145.1 ID=mRNA_P-fluviatile_contig14.2145.1|Name=mRNA_P-fluviatile_contig14.2145.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5459bp|location=Sequence derived from alignment at P-fluviatile_contig14:1294733..1300191- (Porterinema fluviatile SAG_2381)
CACTCAGTGCGTTCGCGTCCACAACAACAACAACCGCAACCTCGACACGA
TATGGCGACTCGAACAATCAAGGTCAGCTTCCAGGGCGCCTCCCGCGATG
TCGACGTCTCGGCTCCGTTCACCCTCGCCGGCCTGCAGCAAGCCATCGCC
TCCAAATTCTCCGTCGACCTGCCTCCGAGGGCCGGGGTGGGCGAGGCCGC
CAAGGACAGCGACCTATCCTTCACCTACAAAGACCCCGAGGGAGATGAAA
TCGTTTTCGACCAGGACTCCGAGCTCACCCTCGCCCTTCGCCTCTGCCCG
TCGCTCGAGATCTTAGCCCGCGCTAAGGCACAGGTGGGAAAGCCAGATGA
TACGCACAACCCCAATACCACGGCAACGTCAAGGGGGTGTCCCATCGCCA
GTCACCACTTGCAGCAAGCAGTAGAGATCAAGCCCAAGCCGCCCTAGCAT
CCAGCGACTCAGAAGGTTTTTCTTAGCTTCGTGCTTGCGGCCAGTCTCTC
AATAATTACTTTTATTTTCCATGTGTTGCCCTCTGGTATAATGTAAGCGG
GGCGTTCTGCCACACGATCACAATCTGCAACTTTTTTGGTACAGGCAGAG
TTTCTCCATGGATGGTGTTGGGTATACTCACAGCATCGTCAGATTATTTC
AAACATAGAACTTTCCGAGAAGATGGAGCGGGCAATTTGGAGGTTCAAGA
GTTGATATGGCTTCAGATATGGCGATACTACCTTTGCAGCACATTACAGA
ATGGAGGGTATATGTATCTGCAACGGATATGGTGTTTGAGGTTTGCGGTC
AGTCCTTTTTCTTCCTTCCATAATCGAGTCTTTTCCCCGGCTCTTACGCC
ACCCCGGCTTCCACGCCATCACCGGACTCTCACGTCCTTGTCTATACCTT
TCCACGGCTTTCACGCCACCCGGCTATCACGCCACTACCTAGGCTTTCAC
GCCGTTACCCAGGCTTTCACGCCATTACATAGCGTTCACGCAATCCGAGC
TTTCACGCTCTTTCACATCATAATAAGGAAAGCAGAGCCTTCACGCCTGC
GGATAGTTTTACCCCAATTTCTAGTTCAGCAGCTTCCACGCTGCAGACTC
GTTTATTTTCCCCCCTCGGGACCCGCGCTGGGACCACACAACCACATCAC
AGATGGCTTACCGCGCGCATTCAATCGCACCCATACATTAACGTCCTCCC
CTCCCTCGCCCCCACAGGGGTGCACAATGTCCCCAACGTTGTTCCAGGTA
TTCATCAACGACTTACTGAAAGAGGTAGAGGCGGTAGAGAAGGGAGTAGA
AGTAGGGGAAACCTCGGTATCGGGACTGCTATTTGCTGACGACTTTGTTG
GGATGTCGGACACGCCTGAGGGGCTCCAACTACAGATTAACGCAGCGAAG
ACCTACGCTGATAAGTGGAGATTCTCGGCCAACGTCCCAAAGTGTGCCGT
AATGGTATGCAATGAAGTTGGTGACGAGGAAGTAGGTACCAAGTGGACGT
GGGGGGACAAGGAGCTGCCAAGAGTGGAAAAATACACATACCTTGGAGTA
GAGATAGCAAAGGACTGTAAATGGGATGCACACATGCACAAAATAGCGGA
CAAGGGCAAAGCAAGGGCAGGGAAGTTGCACCCAATCCTAGCAGACCGGC
ACCTTGATACACGCGTCAAAATTACCATTCTGAAAAGTGTTATCATCCCG
CCACTAGAGTACGCGGGAGAAGTTTGGGAAGGAACAAGAAAATAGTAGCA
GAGTTGGAGGCAGCGCAGATGAAAGCAGCGAAGATCATTCTAGGATGCTC
CCAGCGCACAAGTAACGCAGCAGTGAGAGCAGAGTTGGGGATCTACTCCT
TAAGAACGGGAAGAGACAGGAGGAAGTTGACATGGCAATACCGTTTGGAA
AACATGGGAAAGGAGAGGTTACCGAGAATAGCTTGGGAGGCGAGATGGGT
AAACAAGGCCAAGGGTAGACAACCCATTGAGTGGGCTAAGGTTGTACAGG
GGAGTGTGGGAGTGGGTTAGATATTGACGAACGGGAGACGACGGGAGCGG
AAAGCTTAGAAGGGTACAAGAAGAGCATCTCAGAAGCCTTTGAAAATAGA
GAAGACCAGAGCTTGCGGAAAGAGACCAAGGAAAAGGAGGTTCTAGAAGT
GTACGGAAGGCTGGACGAAGGAATAGGGTTCAAGGAGTACCTGAACGGAC
CATTGGATGAAGGAACAAAGATGAAGGTCAAATTTAGAACGGGCGACATT
GACCTACGGGAACGTAGAAGGAGGTTTAGGAAGGTAGACGACGACGAAGA
CAAGTTCAAATGTGACTGCGGCGCCGAATGCGAAGACCGGGTACATGTAG
TTGCGGAATGCCCGTTGTACGATCAGGAGAGAGAAGGGTACATGGTTGAG
CTGGAAAAAGTAGACAGTCGGTATAGAGAGAAGTTTGAGGCATGGAACAA
AGAGGAGAAGACGGTAGCGGTACTCGGGTGTAAGATGTGGCCCAGGACGG
ACAGGTATAAAGTAGACAGGTTAGGGAAAACATTTTTGAGCCACCTTTGG
CAAAGTAGGAAGGAACGATTGGCCATCGGTGGTCGATCCTGCGGAACAAT
GCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACAACTAAGGCATG
CAAAACATGAGTACGCCCCCCCCCTCCCTCGCCCCTTCGGCTCCGTCCTC
GGCCCCGTCCCCAACTCCGCCCCGTCCCGAACGCCATCCTTCCTTTCCTC
TGTGATTCTTTGCGGCGTCCCTTTACCAGCCCGCCCGGAAGCCCGACCCC
GAGCGCAAGCTGTACCAGACCGCCGCCCGCAACCTTCGCGAGTACAACGG
CGTGCCATCCATGACCCCGGCAAAGCTCATCAAGACACTGGCGTTCCTCA
AGCTGGGCCCGCGTCGCCTCGTGAAGCAGGGCCTGGCCCCCCGCGTACTG
CTGGCTCGCATGACCGCCGTGGCCAGCAAGGAGACGACGAGCCGAGAGGT
GGTTTCGACGGACGGAAAGGCCGACGGCGAGGAGGAGATGAATGATGCCC
CCGTCGAATCGGTCGCCGCCAGAGTGACACCGATGAGCGTGAAGGGCGAT
GACGACGGCGAGGAGGATAAGTCGGACGACGATGGGTACGTGTCCGTTGA
GCCCGCTGCCGCCGCTGTTTCTGCCTCGGCGAAGGCGAGCCCCTCCGAGG
CCGTCGACGACGCCCGCGCTGCCGACAACTACTCATCCTCCGACACGGAC
AGCGACAGTGCCACTGACGGCAGCGGTGGCAGCAACAGCGGCGGAGCTGC
TGGTGCGGAGAAGCTCTTCACTCACGGGGCGTTCGTCGCCGCCGGCATCC
GGCTCCGCCCCCGCGAGGTCCAGCCCCTCCTCCTCGCCTTGGGCGTCCCC
CCCCGCCGCCTGGTCAAGCTCGGATACGTCGACTGCAAGAACCTCCCCGC
CATGGACAAGGAGTACAGGAGGGCGATGCAACGCCGAGACGAGATGAGGA
ACGCCATGATAGGGAACCGCCGCGGTACCGACAACGCTGCGGGCCCGGGT
GCGGCAGGATGCTGCATGTGGGCTCCCGGCGGCTTACGCCATTGGATGGG
TGCCGCCGAAGACGGGCAGTGGCACCCTTGCGGGCGGGTGATGATGGGTT
GCCTCTACGGCGGGCCTTGCCCACCCCCCGGCGCACATGCGTGAGGAAGA
CGGCGTGTTGTTCGCCCACCACTTCCACCACCCCCACAACTTCCACCACC
CTCCCCCTCACCCCCACCACCCCGGTCCCCACGGCCGCCACGCTCCTCAC
CACCCTCCTCACCACTCTCCTCACCACCCTCCTCACCATCCTCCTCACCA
CCCTCCTCACCATCCTCCTCACCACCCTCCTCACGGCCATCACGCTCCTC
GCCACCCTCCTCGAGGCCACCACCCCCCTCACCCCGAACACGGGATGGGC
GGTGGCGGCAGCTTCCACTGGGGAGAGTAGGACACCTCCGGCCGTCGTGA
AGCTCCATAGGGGGAGGGAGCATGATTTCGTGGCGCTTCAGCAAAACAGA
CTGCTCAATGTTGAAGGTAGAGCGATTCGTCCTTATCTTTTGTCACCTGG
GTGTTGTGGTGGTCTTCCTCCTCACTTTGGTGTTTGCATCAATAATACTT
TGCAACTGGGCAGAGGCCTCCTTCGGAAGAATGGACACGAGGGATGATGG
AGACGGAAGGTTTTGACATGGGTACCTGTTCCATCTTTTGAGGCTTTTGC
GCGCGTGTGCAGCTCGGCGGTAAGCATGCAACCACTCTTCGGGTCGTTAA
GCGTCGGCCTTGATCGACAGCTTCGCGCGACCGTTCACCTCGCATGATGA
GTGCGGAGCGCTTCCGTTCTTTTGTTTGTTTTCTTTTCGTTGTTGTGTGT
GTTTCGTTCGTGCGAAGCACCTGTGTACGGGCGCGGAAAACTTGGATAAT
TGGGGGCACGGAATACTTGAATAATTTGGGGGCACGGAAAACCTGGATAA
TTTGGGGGCATGGAAAACTTGGATGATTTGGGGGCACGAGAAACTTGCAT
AATTTGGGGGCAACCGAGCTGGGGAAACTAAGGAGATGTCTGTTGGCTTC
GAGAGGGCGGTCGGGGTATTGGGCTCGTTGGTCTGGGGTAAGCATCAGCT
TCACGACGATATGTAGAAGGAAAGGTTTTGCTCGTTCAGCGGTCGGATAG
TCAGCTTTTGAGTGGTGCAACGGGAAGCACCCGACAGTGAAGCAAGGTGG
TGTCGCGTTGAGATGGTCTCAAAACCGAAGTTACGGGCTGATGATGTCGC
AGCACGCCACCAGCTTGTCAGCAAAAACGGCGTCAAGTTGTTAAGAGGAA
CACTTTCAGTCGCAGGAGGCAAGCTCGTCCGTAGAAAGAGTAAACATTAT
GTTTTCGTTGTCGGGGAGGCTCACGTCGCGCAGCGGTGGGCATCGTTTTT
GACGTATACATGTGCATCACTTGCTGTTTGATCGGCAGTGGGGGGATTGT
CCATTTTTATTATACCGATCGCCCCGGTGGTAGGTATCCCCGTAAACTTC
TAGCAGGCAAGATCATCGGTTCGAATCCCAGCGTGAAGCGACTTTTTCTC
ACACAACGAGCATATTCTTGCACTACTTGCATTCTTGACGGTGGATAGCG
CCTAGTGCGTATAATACACAAAATGGGAAACAGTGGCTGAAGGTCTTCGC
AAACCATCGGTCAGCAAGGAAATGGTGGCCGCAGGGAGGGGAACTTGATG
TGCTACCACGATTCAGATGTTCAAGCAAGATGTTGTGGCAAGGCGCTTTT
CGAACTCTGGAAGTGGATGTGATGAAAAATGGGAATATGTTACGAGTTTG
AAGGACTGTCTCACACGACTCCTCCACTCGAAAACGGGTGATGTACACTA
ATCGTTTTGCGTCGAAAAGGTCGCCGACGTGGCGGGCGCCACGACCGTCG
CTCTCGAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1294733..1300191-

>mRNA_P-fluviatile_contig14.2145.1 ID=mRNA_P-fluviatile_contig14.2145.1|Name=mRNA_P-fluviatile_contig14.2145.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2394bp|location=Sequence derived from alignment at P-fluviatile_contig14:1294733..1300191- (Porterinema fluviatile SAG_2381)
ATGGCGACTCGAACAATCAAGGTCAGCTTCCAGGGCGCCTCCCGCGATGT
CGACGTCTCGGCTCCGTTCACCCTCGCCGGCCTGCAGCAAGCCATCGCCT
CCAAATTCTCCGTCGACCTGCCTCCGAGGGCCGGGGTGGGCGAGGCCGCC
AAGGACAGCGACCTATCCTTCACCTACAAAGACCCCGAGGGAGATGAAAT
CGTTTTCGACCAGGACTCCGAGCTCACCCTCGCCCTTCGCCTCTGCCCGT
CGCTCGAGATCTTAGCCCGCGCTAAGGCACAGATGGCGACTCGAACAATC
AAGGTCAGCTTCCAGGGCGCCTCCCGCGATGTCGACGTCTCGGCTCCGTT
CACCCTCGCCGGCCTGCAGCAAGCCATCGCCTCCAAATTCTCCGTCGACC
TGCCTCCGAGGGCCGGGGTGGGCGAGGCCGCCAAGGACAGCGACCTATCC
TTCACCTACAAAGACCCCGAGGGAGATGAAATCGTTTTCGACCAGGACTC
CGAGCTCACCCTCGCCCTTCGCCTCTGCCCGTCGCTCGAGATCTTAGCCC
GCGCTAAGGCACAGCCCGCCCGGAAGCCCGACCCCGAGCGCAAGCTGTAC
CAGACCGCCGCCCGCAACCTTCGCGAGTACAACGGCGTGCCATCCATGAC
CCCGGCAAAGCTCATCAAGACACTGGCGTTCCTCAAGCTGGGCCCGCGTC
GCCTCGTGAAGCAGGGCCTGGCCCCCCGCGTACTGCTGGCTCGCATGACC
GCCGTGGCCAGCAAGGAGACGACGAGCCGAGAGGTGGTTTCGACGGACGG
AAAGGCCGACGGCGAGGAGGAGATGAATGATGCCCCCGTCGAATCGGTCG
CCGCCAGAGTGACACCGATGAGCGTGAAGGGCGATGACGACGGCGAGGAG
GATAAGTCGGACGACGATGGGTACGTGTCCGTTGAGCCCGCTGCCGCCGC
TGTTTCTGCCTCGGCGAAGGCGAGCCCCTCCGAGGCCGTCGACGACGCCC
GCGCTGCCGACAACTACTCATCCTCCGACACGGACAGCGACAGTGCCACT
GACGGCAGCGGTGGCAGCAACAGCGGCGGAGCTGCTGGTGCGGAGAAGCT
CTTCACTCACGGGGCGTTCGTCGCCGCCGGCATCCGGCTCCGCCCCCGCG
AGGTCCAGCCCCTCCTCCTCGCCTTGGGCGTCCCCCCCCGCCGCCTGGTC
AAGCTCGGATACGTCGACTGCAAGAACCTCCCCGCCATGGACAAGGAGTA
CAGGAGGGCGATGCAACGCCGAGACGAGATGAGGAACGCCATGATAGGGA
ACCGCCGCGGTACCGACAACGCTGCGGGCCCGGGTGCGGCAGGATGCTGC
ATGTGGGCTCCCGGCGGCTTACGCCATTGGATGGGTGCCGCCGAAGACGG
GCAGTGGCACCCTTGCGGGCGGGTGATGATGGGTTGCCTCTACGGCGGGC
CTTGCCCACCCCCCGGCGCACATGCGTGACCCGCCCGGAAGCCCGACCCC
GAGCGCAAGCTGTACCAGACCGCCGCCCGCAACCTTCGCGAGTACAACGG
CGTGCCATCCATGACCCCGGCAAAGCTCATCAAGACACTGGCGTTCCTCA
AGCTGGGCCCGCGTCGCCTCGTGAAGCAGGGCCTGGCCCCCCGCGTACTG
CTGGCTCGCATGACCGCCGTGGCCAGCAAGGAGACGACGAGCCGAGAGGT
GGTTTCGACGGACGGAAAGGCCGACGGCGAGGAGGAGATGAATGATGCCC
CCGTCGAATCGGTCGCCGCCAGAGTGACACCGATGAGCGTGAAGGGCGAT
GACGACGGCGAGGAGGATAAGTCGGACGACGATGGGTACGTGTCCGTTGA
GCCCGCTGCCGCCGCTGTTTCTGCCTCGGCGAAGGCGAGCCCCTCCGAGG
CCGTCGACGACGCCCGCGCTGCCGACAACTACTCATCCTCCGACACGGAC
AGCGACAGTGCCACTGACGGCAGCGGTGGCAGCAACAGCGGCGGAGCTGC
TGGTGCGGAGAAGCTCTTCACTCACGGGGCGTTCGTCGCCGCCGGCATCC
GGCTCCGCCCCCGCGAGGTCCAGCCCCTCCTCCTCGCCTTGGGCGTCCCC
CCCCGCCGCCTGGTCAAGCTCGGATACGTCGACTGCAAGAACCTCCCCGC
CATGGACAAGGAGTACAGGAGGGCGATGCAACGCCGAGACGAGATGAGGA
ACGCCATGATAGGGAACCGCCGCGGTACCGACAACGCTGCGGGCCCGGGT
GCGGCAGGATGCTGCATGTGGGCTCCCGGCGGCTTACGCCATTGGATGGG
TGCCGCCGAAGACGGGCAGTGGCACCCTTGCGGGCGGGTGATGATGGGTT
GCCTCTACGGCGGGCCTTGCCCACCCCCCGGCGCACATGCGTGA
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