mRNA_P-fluviatile_contig14.2143.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2143.1
Unique NamemRNA_P-fluviatile_contig14.2143.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2143.1 vs. uniprot
Match: D7FQC7_ECTSI (Protein tyrosine phosphatase, receptor type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC7_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 2.290e-68
Identity = 126/175 (72.00%), Postives = 142/175 (81.14%), Query Frame = 1 
Query:    1 FDENGELEEEDLVLSRRELRQLLTRELGIVMRGEDMRRLVDAFSTNEDRLVRWADFENLTGGVREPVRGDASKRLERRCVWETTCPETGMPNAYVVCALKEK--GGWHG------MRDEGGDEDEDM-----RPATTATTSGWRGACEIITLKSGDRRKRSELADRAKRVRVLRK 486
            FD+N +LE EDLVLSRRE+RQLLT+ELGI+MRGE+MRRLVD+F TNEDRLVRW DFE LTGGVRE VRGDA+KRLE+RCVWETTCPE GMPNA+VV A+K+   GGW G      MRD   DEDED      RPA T TT+ W G CEIITLKSGDRR R+ELADRAKR+R+LRK
Sbjct:  553 FDDNDKLEPEDLVLSRREMRQLLTKELGILMRGEEMRRLVDSFDTNEDRLVRWEDFEKLTGGVREAVRGDAAKRLEKRCVWETTCPEIGMPNAFVVSAVKKTATGGWEGTGGKGVMRDN--DEDEDKAADGWRPAGTTTTA-WGGTCEIITLKSGDRRWRNELADRAKRLRILRK 724
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BLAST of mRNA_P-fluviatile_contig14.2143.1 vs. uniprot
Match: A0A835ZF47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF47_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.770e-28
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 1 
Query:   31 DLVLSRRELRQLLTRELGIVMRGEDMRRLVDAFSTNEDRLVRWADFENLTGGVREPVRGDASKRLERRCVWETTCPETGMPNAYVVCALKEKGGWHGMRDEGGDEDEDMRPATTATTSGWRGACEIITLKSGDRRKRSELADRAKRVRVL 480
            D  L++ ELR LLT+ELGIVM  E+MRRL        D+ V W +FE  TGG R+ +RGD++KRLE+RC WETTCP TGM NAYVV A + K      R      ++D    + A  SG  G   +I L +G+ R R+EL +R +R+ +L
Sbjct:  258 DPALTKSELRYLLTKELGIVMGAEEMRRL--------DQHVSWREFEAFTGGTRDALRGDSTKRLEQRCTWETTCPATGMSNAYVVTASRAKLSQPSRRPSSTSVNDDDDHGSGAQRSGSGGRT-LIQLSNGETRVRTELPERQRRLDLL 398
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BLAST of mRNA_P-fluviatile_contig14.2143.1 vs. uniprot
Match: A0A7S2CVF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVF6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.010e-6
Identity = 41/148 (27.70%), Postives = 68/148 (45.95%), Query Frame = 1 
Query:   37 VLSRRELRQLLTRELGIVMRGEDMRRLVDAFSTNEDRLVRWADFENLTGGVREPVRGDASKRLERRCVWETTCPETGMPNAYVVCALKEKGGWHGMRDEGGDEDEDMRPATTATTSGWRGACEIITLKSGDRRKRSELADRAKRVRVL 480
            +  R +L+ LL R LGI ++ E++R +VDAF  +    +    F   TG       G+  ++L  RCVWE TC + G+ NA+ V  +                     P+             I+ LK+G++R++ EL +R  R+ +L
Sbjct:  658 LFDRLDLKSLL-RYLGIELKHEELRMIVDAFDKDSSGKMEKDAFLAFTGA--RVAEGETRQKLNSRCVWEGTCGKCGLSNAFRVSTVP--------------------PSAEGKN--------IVKLKNGEKRRKVELKERRLRMEIL 774
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BLAST of mRNA_P-fluviatile_contig14.2143.1 vs. uniprot
Match: A0A7S2G9T5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9T5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-6
Identity = 41/148 (27.70%), Postives = 68/148 (45.95%), Query Frame = 1 
Query:   37 VLSRRELRQLLTRELGIVMRGEDMRRLVDAFSTNEDRLVRWADFENLTGGVREPVRGDASKRLERRCVWETTCPETGMPNAYVVCALKEKGGWHGMRDEGGDEDEDMRPATTATTSGWRGACEIITLKSGDRRKRSELADRAKRVRVL 480
            +  R +L+ LL R LGI ++ E++R +VDAF  +    +    F   TG       G+  ++L  RCVWE TC + G+ NA+ V  +                     P+             I+ LK+G++R++ EL +R  R+ +L
Sbjct:  658 LFDRLDLKSLL-RYLGIELKHEELRMIVDAFDKDSSGKMEKDAFLAFTGA--RVAEGETRQKLNSRCVWEGTCGKCGLSNAFRVSTVP--------------------PSAEGKN--------IVKLKNGEKRRKVELKERRLRMEIL 774
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQC7_ECTSI2.290e-6872.00Protein tyrosine phosphatase, receptor type n=1 Ta... [more]
A0A835ZF47_9STRA2.770e-2846.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CVF6_9STRA1.010e-627.70Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2G9T5_9STRA1.070e-627.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1280082..1281647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue1.9e-59
Seed eggNOG ortholog2880.D7FQC7
EggNOG free text desc.EF-hand domain pair
EggNOG OGs29989@1,2RG9Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size488
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2143.1prot_P-fluviatile_contig14.2143.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1280083..1281647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.1137419-CDS-P-fluviatile_contig14:1280082..12802091622815611.1137419-CDS-P-fluviatile_contig14:1280082..1280209Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1280083..1280209 -
1693562409.3588521-CDS-P-fluviatile_contig14:1280082..12802091693562409.3588521-CDS-P-fluviatile_contig14:1280082..1280209Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1280083..1280209 -
1622815611.1306903-CDS-P-fluviatile_contig14:1280787..12810051622815611.1306903-CDS-P-fluviatile_contig14:1280787..1281005Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1280788..1281005 -
1693562409.370844-CDS-P-fluviatile_contig14:1280787..12810051693562409.370844-CDS-P-fluviatile_contig14:1280787..1281005Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1280788..1281005 -
1622815611.1443696-CDS-P-fluviatile_contig14:1281184..12812751622815611.1443696-CDS-P-fluviatile_contig14:1281184..1281275Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1281185..1281275 -
1693562409.3884633-CDS-P-fluviatile_contig14:1281184..12812751693562409.3884633-CDS-P-fluviatile_contig14:1281184..1281275Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1281185..1281275 -
1622815611.1574302-CDS-P-fluviatile_contig14:1281597..12816471622815611.1574302-CDS-P-fluviatile_contig14:1281597..1281647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1281598..1281647 -
1693562409.4075525-CDS-P-fluviatile_contig14:1281597..12816471693562409.4075525-CDS-P-fluviatile_contig14:1281597..1281647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1281598..1281647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2143.1

>prot_P-fluviatile_contig14.2143.1 ID=prot_P-fluviatile_contig14.2143.1|Name=mRNA_P-fluviatile_contig14.2143.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
FDENGELEEEDLVLSRRELRQLLTRELGIVMRGEDMRRLVDAFSTNEDRL
VRWADFENLTGGVREPVRGDASKRLERRCVWETTCPETGMPNAYVVCALK
EKGGWHGMRDEGGDEDEDMRPATTATTSGWRGACEIITLKSGDRRKRSEL
ADRAKRVRVLRK
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mRNA from alignment at P-fluviatile_contig14:1280082..1281647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2143.1 ID=mRNA_P-fluviatile_contig14.2143.1|Name=mRNA_P-fluviatile_contig14.2143.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1566bp|location=Sequence derived from alignment at P-fluviatile_contig14:1280082..1281647- (Porterinema fluviatile SAG_2381)
TTCGATGAAAACGGCGAGTTGGAGGAAGAAGACCTCGTGCTCAGTCGAAG
GTACTTTGTGGGATATCTGCCTTCGCCCGAATTTTGTGCACTACTCCGAT
TGAAAGGCCGCAGTACGTCGTCATTTACTCACGTGCTGCTTCGGTAAAAG
CGCTAGGCACGAAACCGACCGGCGATGCCATAATCCCCGCACGAGGGGTT
TGAGCATTTCGTCGGGTTTTGAGCATTGCGTCCGGGTACACCCTTGAAGT
GCTGCAATAGTCGAGGGTTCCAAACGCGCGAGTATACTCATCGTGCGCCC
CGCGCGAGGAGAAGGAGCCGACACCTTCAGTCTGCATCACTTCTTGGTGT
CTCGTTGCTGCTTGTCGTGCAGGGAATTAAGGCAGCTGCTGACCAGGGAG
CTGGGCATTGTGATGCGCGGCGAGGATATGCGCCGTCTGGTCGATGCCTT
CTCCACAAATGAGGTAGTCACAAAAAATGTGGTCTAGTGGCGTATGGTCC
CATCTGGTGGCACTACATCATTTTTTTCGCCTCACGTTTCATCTGATTTA
AACTCCGCGGAACAATTGAAAGTATGACTTTCACGCACGACTTTCTTATC
GCCCTGGAACAAACCAACCTGCAAACCTACTGCCTCGTGCAGGATCGCCT
GGTGAGATGGGCCGACTTCGAGAACCTGACGGGTGGAGTGAGGGAGCCTG
TGAGGGGGGACGCGTCCAAGAGGCTGGAGCGGCGCTGCGTATGGGAAACA
ACTTGCCCAGAAACCGGCATGCCGAACGCCTACGTCGTCTGCGCCCTGAA
GGAGAAAGGGGGCTGGCATGGGATGAGAGACGAAGGCGGTGACGAGGACG
AGGATATGCGGTGAGAAACCCCGACGTTGGAGTGGTTTCTGTGGTGACCG
CACGCGCGTTTGCTGGTTCCTCGAGACTCGCGGCTCAATCGAAGCCTATC
CAATTGGAATTAGCTCCTTGGTTCTCTTTGTGCGGTCACCATTCCTTTTT
TACTTTGTTGTCGACATACGCCATGCGCGGCATCTTGGAGTGTGGTTCAG
ATTTGTCGTCTTGGACTCTTGGGGCGCTGATGTGAACAGAATTCCGACGC
ACGGCGTGTCGTTGCTTCCTATCAAACGAGTGGCCAAAACAGCAAGTATT
GCGTTTGCCCTCCAAAGGACGGAACCGTTGCACGCCTTACTAAAAAAAAA
TGGGGAGCGCGTCCAATGCACCCCATTTAGGAGCACCACTTGACTCCGAT
CGAGAAATAAAACTCAAAAGGGGTGGACGTATGATACTTCTTCGTTGTCC
CCGCACGAACTGTACTTAGCTGTCGTCCGACGGCGAGGTGCATGTGGAAA
TACGGACTCGTTTTCTCCACGCCATCCTTAAAACCACCGTCTCATGATCT
TCCACCGACGACCTGTCTCCACACAAACGCCCCGGCAGACCTGCCACGAC
CGCAACCACGAGCGGTTGGCGGGGGGCTTGCGAGATAATCACGCTCAAGA
GCGGAGACCGCAGGAAGCGGAGCGAGCTCGCCGACCGCGCCAAGCGCGTG
CGTGTCCTCCGGAAGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1280082..1281647-

>mRNA_P-fluviatile_contig14.2143.1 ID=mRNA_P-fluviatile_contig14.2143.1|Name=mRNA_P-fluviatile_contig14.2143.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=972bp|location=Sequence derived from alignment at P-fluviatile_contig14:1280082..1281647- (Porterinema fluviatile SAG_2381)
TTCGATGAAAACGGCGAGTTGGAGGAAGAAGACCTCGTGCTCAGTCGAAG
TTCGATGAAAACGGCGAGTTGGAGGAAGAAGACCTCGTGCTCAGTCGAAG
GGAATTAAGGCAGCTGCTGACCAGGGAGCTGGGCATTGTGATGCGCGGCG
AGGATATGCGCCGTCTGGTCGATGCCTTCTCCACAAATGAGGGAATTAAG
GCAGCTGCTGACCAGGGAGCTGGGCATTGTGATGCGCGGCGAGGATATGC
GCCGTCTGGTCGATGCCTTCTCCACAAATGAGGATCGCCTGGTGAGATGG
GCCGACTTCGAGAACCTGACGGGTGGAGTGAGGGAGCCTGTGAGGGGGGA
CGCGTCCAAGAGGCTGGAGCGGCGCTGCGTATGGGAAACAACTTGCCCAG
AAACCGGCATGCCGAACGCCTACGTCGTCTGCGCCCTGAAGGAGAAAGGG
GGCTGGCATGGGATGAGAGACGAAGGCGGTGACGAGGACGAGGATATGCG
GATCGCCTGGTGAGATGGGCCGACTTCGAGAACCTGACGGGTGGAGTGAG
GGAGCCTGTGAGGGGGGACGCGTCCAAGAGGCTGGAGCGGCGCTGCGTAT
GGGAAACAACTTGCCCAGAAACCGGCATGCCGAACGCCTACGTCGTCTGC
GCCCTGAAGGAGAAAGGGGGCTGGCATGGGATGAGAGACGAAGGCGGTGA
CGAGGACGAGGATATGCGACCTGCCACGACCGCAACCACGAGCGGTTGGC
GGGGGGCTTGCGAGATAATCACGCTCAAGAGCGGAGACCGCAGGAAGCGG
AGCGAGCTCGCCGACCGCGCCAAGCGCGTGCGTGTCCTCCGGAAGACCTG
CCACGACCGCAACCACGAGCGGTTGGCGGGGGGCTTGCGAGATAATCACG
CTCAAGAGCGGAGACCGCAGGAAGCGGAGCGAGCTCGCCGACCGCGCCAA
GCGCGTGCGTGTCCTCCGGAAG
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