mRNA_P-fluviatile_contig14.2142.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2142.1
Unique NamemRNA_P-fluviatile_contig14.2142.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2142.1 vs. uniprot
Match: D7FQC7_ECTSI (Protein tyrosine phosphatase, receptor type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 8.490e-33
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 SATDRAATKILMEWAHEYSNDQGVSVEAVFSQFDRQGSGSIEPLELGNLLEALGVEVTEERLREAFMELDCGGGGGMDGLLSFD 258
            +ATDRAATKILM+WAHE S+D+GVSVEAVFSQFDR G G I+PLELGNLLEALGVEVTEERLREAF ELD GG G +DG LS D
Sbjct: 1238 TATDRAATKILMQWAHECSDDRGVSVEAVFSQFDRDGRGVIDPLELGNLLEALGVEVTEERLREAFTELDRGGDG-IDGALSLD 1320
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BLAST of mRNA_P-fluviatile_contig14.2142.1 vs. uniprot
Match: A0A835ZF47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF47_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.020e-14
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    4 GSATDRAATKILMEWAH-EYSNDQGVSVEAVFSQFDRQGSGSIEPLELGNLLEALGVEVTEERLREAFMELDCGGGGGMDGLLSFD 258
            G   D+    +L +W   E + D+GVSV   F+++DR GSG+I+P+ELGNLLE LGV  TEERL  AF E D       DGL+S D
Sbjct:  850 GLKGDQRVAAMLSQWTKAERAEDRGVSVAKAFARYDRDGSGAIDPVELGNLLEDLGVNPTEERLHAAFGEFDLD----RDGLISLD 931
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BLAST of mRNA_P-fluviatile_contig14.2142.1 vs. uniprot
Match: A0A7S3XSW0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSW0_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 4.460e-9
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   19 RAATKILMEWAHEYSNDQGVSVEAVFSQFDRQGSGSIEPLELGNLLEALGVEVTEERLREAFMELD 216
            +AA KI+ +WA   + D+GV++E VF ++D    G IE   L +LLE LGVE +EERLREA  ELD
Sbjct:   11 QAADKIMAQWAGAGAEDRGVNLELVFRKYDDGRRGYIEMGHLQSLLEDLGVEPSEERLREAQAELD 76
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BLAST of mRNA_P-fluviatile_contig14.2142.1 vs. uniprot
Match: A0A6J2LDC0_9CHIR (Calmodulin like 5 n=5 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2LDC0_9CHIR)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   49 AHEYSNDQGVSVEAVFSQFDRQGSGSIEPLELGNLLEALGVEVTEERLREAFMELDCGGGGGMDGLLSF 255
            A E S +Q    +A F++FD+ G G+I   ELG +L+ALG   TEE L+    +LD  G    DG +SF
Sbjct:    2 AEELSEEQVAEFKAAFTRFDKNGDGTINVQELGEVLKALGQNPTEEELKNIISQLDTDG----DGAISF 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQC7_ECTSI8.490e-3380.95Protein tyrosine phosphatase, receptor type n=1 Ta... [more]
A0A835ZF47_9STRA7.020e-1448.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XSW0_HETAK4.460e-951.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6J2LDC0_9CHIR1.310e-642.03Calmodulin like 5 n=5 Tax=Phyllostomidae TaxID=941... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1266766..1268520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue8e-28
Seed eggNOG ortholog2880.D7FQC7
EggNOG free text desc.EF-hand domain pair
EggNOG OGs29989@1,2RG9Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2142.1prot_P-fluviatile_contig14.2142.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1266768..1268520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.0530708-CDS-P-fluviatile_contig14:1266767..12668841622815611.0530708-CDS-P-fluviatile_contig14:1266767..1266884Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1266768..1266884 -
1693562409.326683-CDS-P-fluviatile_contig14:1266767..12668841693562409.326683-CDS-P-fluviatile_contig14:1266767..1266884Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1266768..1266884 -
1622815611.0681937-CDS-P-fluviatile_contig14:1267294..12673901622815611.0681937-CDS-P-fluviatile_contig14:1267294..1267390Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1267295..1267390 -
1693562409.3383775-CDS-P-fluviatile_contig14:1267294..12673901693562409.3383775-CDS-P-fluviatile_contig14:1267294..1267390Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1267295..1267390 -
1622815611.0789464-CDS-P-fluviatile_contig14:1268475..12685201622815611.0789464-CDS-P-fluviatile_contig14:1268475..1268520Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1268476..1268520 -
1693562409.3487318-CDS-P-fluviatile_contig14:1268475..12685201693562409.3487318-CDS-P-fluviatile_contig14:1268475..1268520Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1268476..1268520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2142.1

>prot_P-fluviatile_contig14.2142.1 ID=prot_P-fluviatile_contig14.2142.1|Name=mRNA_P-fluviatile_contig14.2142.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
AGSATDRAATKILMEWAHEYSNDQGVSVEAVFSQFDRQGSGSIEPLELGN
LLEALGVEVTEERLREAFMELDCGGGGGMDGLLSFD
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mRNA from alignment at P-fluviatile_contig14:1266766..1268520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2142.1 ID=mRNA_P-fluviatile_contig14.2142.1|Name=mRNA_P-fluviatile_contig14.2142.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-fluviatile_contig14:1266766..1268520- (Porterinema fluviatile SAG_2381)
GCGGGGTCTGCAACCGACAGGGCGGCTACGAAAATTCTTATGGAGGTAAG
GCGAAGTGAATACTTTAGGGGTAGGGAGGGGCCAGTGAATGTCTTTCGAG
AGCGTCTGTGGGTGGGGCGAAGGGCGTAACTCGACGATTAAGTTGGATGG
GAGACAGAGTGAAGGTTCTCAATGATACGCATTCTAAAAAGTGCGGGGGA
GAAATCTTGTTTTTGCGCGGAGAGCTTTGTGCAGAGGACAGGCGCCCGGC
ACGACCGTGCTTTCATCGTGTGGACGGCGCAACATAGGTAGCCTTTGATA
ATCACGGGGGTTGTTGTTACGAAGCCTGAGACACTCACATCCCTGCAAAG
CCGGGACGGGGCGTTTGCCTATCGGGGATGTGCCCGGGCAGGAGGCAAGC
GGTTGAGGCAACTTTTTCCTGTAGTGCGTACGTGCGGCACCGAGAGCGGC
ACATTGCTTGGTCTGCGATTGCCCTATATGCCTCTAAGGAGGCAGCTACA
GATGGTTCGATACCTCATGGCTCCTTCCCCGTTTCTTGTGGGTCAATCAA
CAAGCGCCTGAATCGAGTAAAAGCGGTCCCCGCTCCTCCTTCTCTCCGTC
CCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCCCCCCCCCCTCTCATTCC
TCCATCCAATCTCCCTCTCCCCCCCTTCTCCGCACCTCCATCCGTTCCGC
GCGTAACGGAGACCACGTACACTCGGAACGCTGAGGGGCACGCAAAATAT
CAGCACATTTCATCCGCCTAGGCGCACGCACAGTGTCACCCAACCCCTCG
CTGCTCGTGCACACTGTTCTCTTACTTATCATTGGAATGAGCGGACTAGT
GGTATTCACGCGGTATAAATAGTAGGTACACATGGCGATACACAGTAAAG
AGCACGTGGCAGATGACACCTCGGTAAGCAATTGGTGGTGAACGTCGACA
CGACAGACTAGCTGACCTCATCGACTAGCAATTCCTACCGTATACGTTGT
TCCTCACTTCAACCTGTCGCTCTCCCTCTTCATTGCCCTCACCGAATGTA
TCATTTCGAGCTCACTGGGGAACCGACGAACTCGTAACCAACAAACCCTT
ATACTTGCACCTCCTGAAACGCGGTGTTAGTGGGCTCACGAGTACTCCAA
CGACCAAGGCGTCAGCGTGGAGGCGGTGTTCTCGCAGTTTGACCGCCAAG
GAAGCGGATCGATCGAGCCCCTGGAGGTAAGCACACCCCACGACGAAGGT
GTGCACAACGTCAGGCAGCATAAGCTGCACGGCTCCGGGGGCAGAGACCA
TCAGAGAGACGGCGTGTGAGATGTATTTGTGCATTCTGGGAACAGCAGCT
TTCGTCTATCTTCTGATGATTCGCCCCCACCAAAGATGGCGCGTTGACAA
GGGAAAAGCGTTTTGCGAGGTAGAAAATGCTTCAGCGCACTTAGCAGGAT
GCAGGACTTCGACCACTAGTCTAGCACAGCGTGAGCGAACCGGAAGGAAC
GCGCCCTCTCATGAAGCCACGACAAGCGAGGACAGCCCCGCGAGGGGCTT
GCATCGTGTTTTTTCTATGGAACGGGATTTGAGTTTCTACTACGTGTTCC
TTCCCTCCACTCTTCTTCATTCTCGCGAATCATCAGCTGGGCAACCTGTT
GGAAGCCCTCGGCGTGGAGGTTACGGAGGAACGCCTCAGGGAAGCGTTCA
TGGAGCTCGACTGCGGCGGGGGTGGCGGCATGGATGGATTGCTCTCTTTC
GACGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1266766..1268520-

>mRNA_P-fluviatile_contig14.2142.1 ID=mRNA_P-fluviatile_contig14.2142.1|Name=mRNA_P-fluviatile_contig14.2142.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig14:1266766..1268520- (Porterinema fluviatile SAG_2381)
GCGGGGTCTGCAACCGACAGGGCGGCTACGAAAATTCTTATGGAGGCGGG
GTCTGCAACCGACAGGGCGGCTACGAAAATTCTTATGGAGTGGGCTCACG
AGTACTCCAACGACCAAGGCGTCAGCGTGGAGGCGGTGTTCTCGCAGTTT
GACCGCCAAGGAAGCGGATCGATCGAGCCCCTGGAGTGGGCTCACGAGTA
CTCCAACGACCAAGGCGTCAGCGTGGAGGCGGTGTTCTCGCAGTTTGACC
GCCAAGGAAGCGGATCGATCGAGCCCCTGGAGCTGGGCAACCTGTTGGAA
GCCCTCGGCGTGGAGGTTACGGAGGAACGCCTCAGGGAAGCGTTCATGGA
GCTCGACTGCGGCGGGGGTGGCGGCATGGATGGATTGCTCTCTTTCGACC
TGGGCAACCTGTTGGAAGCCCTCGGCGTGGAGGTTACGGAGGAACGCCTC
AGGGAAGCGTTCATGGAGCTCGACTGCGGCGGGGGTGGCGGCATGGATGG
ATTGCTCTCTTTCGAC
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