mRNA_P-fluviatile_contig14.2141.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2141.1
Unique NamemRNA_P-fluviatile_contig14.2141.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2141.1 vs. uniprot
Match: D7FQC7_ECTSI (Protein tyrosine phosphatase, receptor type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC7_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.000e-45
Identity = 93/117 (79.49%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:   95 IAVQGATGSCGXXGGEFVGERTAAAHVLQDSFRSMRRKEREGVLLYDSTKSRSRVLRLEVIWSTVSREEARRFLLSRGSIVERSQGRLLQFETFRALWAQDERRKSVREEWALLCGL 445
            + VQG  GS    GGEFVGERT A+HVLQDSFRSMRRK++ GVL YD TKSR RVLRLEVIWSTVS EEA+ FLL RGSIVER+QGRL QFETFRALWAQDERRKSVREEWALL G+
Sbjct: 1752 MVVQG--GSWTDGGGEFVGERTVASHVLQDSFRSMRRKDKGGVLEYDRTKSRCRVLRLEVIWSTVSSEEAKGFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREEWALLSGV 1866
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BLAST of mRNA_P-fluviatile_contig14.2141.1 vs. uniprot
Match: A0A7S3Y2K0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2K0_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.260e-13
Identity = 48/102 (47.06%), Postives = 58/102 (56.86%), Query Frame = 2 
Query:  137 GEFVGERTAAAHVLQDSFRSMRRKERE------GVLLYDSTKSRSRVLRLEVIWSTVSREEARRFLLSRGSIVERSQGRLLQFETFRALWAQDERRKSVREE 424
            GEF+GERT AA VL+DS  S R   +                     LRLEVIWSTVSR E  +F L +G IVERS+ ++ Q+E FR  W Q+ RRK  REE
Sbjct:   88 GEFIGERTVAARVLKDSQLSQRTALKATXXXXXXXXXXXXXXXXXXXLRLEVIWSTVSRRENDQFKLDKGVIVERSEEQVSQYEAFRVPWDQERRRKGAREE 189
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BLAST of mRNA_P-fluviatile_contig14.2141.1 vs. uniprot
Match: A0A7S2G9T5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9T5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.190e-12
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2 
Query:  137 GEFVGERTAAAHVLQDSFRSMRRKEREGVLLYDSTKSRSRVLRLEVIWSTVSREEARRFLLSRGSIVERSQGRLLQFETFRALWAQDERRKSVREE 424
            G +VGERT AA VL+D +RS R     GV    S     R+LRLEVIWSTVS EEA   +L R +I++  + ++ +FETFR  WA++E R    EE
Sbjct: 1577 GRYVGERTIAASVLKDIYRSPRHTIEVGVAKPISR----RMLRLEVIWSTVSTEEACDHVLRRDAIIQMDEEQIFEFETFRVPWAEEEARLPEYEE 1668
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BLAST of mRNA_P-fluviatile_contig14.2141.1 vs. uniprot
Match: A0A7S3H9W9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9W9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.530e-10
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 2 
Query:  137 GEFVGERTAAAHVLQDSFRSMRRKEREGVL--LYDSTKSRSRVLRLEVIWSTVSREEARRFLLSRGSIVERSQGRLLQFETFRALWAQDERRKSVREEW 427
            G+++GERT AA+V +D++R++R       +   +       R L LEV+W   S E  + + L  G ++ER QG L QFE FR  W ++ +RK ++EEW
Sbjct:  214 GDYLGERTIAAYVARDNYRTIRDALHSANVEPRHHKVFGTHRQLWLEVVWQRTSDEACKPYDLKSGEVLERMQGHLEQFEVFRCAWREENKRKPLQEEW 312
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BLAST of mRNA_P-fluviatile_contig14.2141.1 vs. uniprot
Match: A0A7S0SYB2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SYB2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.520e-9
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 2 
Query:  140 EFVGERTAAAHVLQDSFRSMRRKEREGVLLYDS-----TKSRSRVLRLEVIWSTVSREEARRFLLSRGSIVERSQGRLLQFETFRALWAQDERRKSVREEWALL 436
            E++GERT AAH+++D+++++R    +  L  D      + S  R++ LEVIW   S+  A +F    G I+ER    L +FE +R LW Q+++R  + +EW LL
Sbjct:  214 EYLGERTIAAHIVKDNYKTVR----DTCLATDRPINSISSSNYRIVWLEVIW-VQSKLNAEQFKYKTGEIIERKLKNLQEFEIYRCLWYQEKQRMRLEDEWELL 312
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQC7_ECTSI3.000e-4579.49Protein tyrosine phosphatase, receptor type n=1 Ta... [more]
A0A7S3Y2K0_HETAK1.260e-1347.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G9T5_9STRA5.190e-1247.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3H9W9_9STRA1.530e-1037.37Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SYB2_9STRA6.520e-936.54Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1263255..1264067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D7FQC7
EggNOG free text desc.EF-hand domain pair
EggNOG OGs29989@1,2RG9Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2141.1prot_P-fluviatile_contig14.2141.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1263361..1263871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.9480796-UTR-P-fluviatile_contig14:1263254..12633601622815610.9480796-UTR-P-fluviatile_contig14:1263254..1263360Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1263255..1263360 -
1693562409.284614-UTR-P-fluviatile_contig14:1263254..12633601693562409.284614-UTR-P-fluviatile_contig14:1263254..1263360Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1263255..1263360 -
1622815611.0050333-UTR-P-fluviatile_contig14:1263871..12640671622815611.0050333-UTR-P-fluviatile_contig14:1263871..1264067Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1263872..1264067 -
1693562409.3178964-UTR-P-fluviatile_contig14:1263871..12640671693562409.3178964-UTR-P-fluviatile_contig14:1263871..1264067Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1263872..1264067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.965594-CDS-P-fluviatile_contig14:1263360..12635741622815610.965594-CDS-P-fluviatile_contig14:1263360..1263574Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1263361..1263574 -
1693562409.3015819-CDS-P-fluviatile_contig14:1263360..12635741693562409.3015819-CDS-P-fluviatile_contig14:1263360..1263574Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1263361..1263574 -
1622815610.9821677-CDS-P-fluviatile_contig14:1263830..12638711622815610.9821677-CDS-P-fluviatile_contig14:1263830..1263871Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1263831..1263871 -
1693562409.310082-CDS-P-fluviatile_contig14:1263830..12638711693562409.310082-CDS-P-fluviatile_contig14:1263830..1263871Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1263831..1263871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2141.1

>prot_P-fluviatile_contig14.2141.1 ID=prot_P-fluviatile_contig14.2141.1|Name=mRNA_P-fluviatile_contig14.2141.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=85bp
MRRKEREGVLLYDSTKSRSRVLRLEVIWSTVSREEARRFLLSRGSIVERS
QGRLLQFETFRALWAQDERRKSVREEWALLCGLP*
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mRNA from alignment at P-fluviatile_contig14:1263255..1264067-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2141.1 ID=mRNA_P-fluviatile_contig14.2141.1|Name=mRNA_P-fluviatile_contig14.2141.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=813bp|location=Sequence derived from alignment at P-fluviatile_contig14:1263255..1264067- (Porterinema fluviatile SAG_2381)
CGGCACCGAAGGCGCAATCGGAGCCAACATAGGAGGAGGAAGAGGAGGAG
GCAGACGGTCCACCACGGGAAGACGGCCATCAACGGCAGCGGCGATAGCG
GTGCAGGGAGCGACTGGTAGCTGCGGCGGTGGCGGCGGGGAGTTCGTTGG
AGAGAGAACAGCGGCGGCGCACGTACTACAAGACTCGTTCAGGTCGATGA
GGAGAAAAGAGCGGGAAGGTGTGCTTCTGTACGACAGGTAAGCAACAGGT
GGTGTGAACATAGCGCGCAGGCCAGAAAATCAAACACCAAAGACGCGCGT
GGAGACCAGTTAGTCATGAGCGAGGTCGCCGTATCACGAGTTTTCCGCGC
GATGCTGGTCTCCGAAAAAAGGCTCATCAAAGGCGACCTCAGCCAAACGT
CTCTTGAAACCGCCAATCACATTTCGTAATTTTTCCGCTGAACCATCGTA
GCTCTCGGTGCATCCCCCGCGTGCCAACTACTATCCGCCTCAGTACCAAG
AGTCGAAGTCGAGTGCTGCGGTTGGAGGTGATTTGGTCGACGGTTTCTCG
CGAGGAGGCGAGGAGATTTCTGCTGTCGCGAGGCTCGATTGTCGAGCGCA
GCCAAGGCCGGCTTCTGCAGTTTGAGACGTTCCGCGCGCTATGGGCACAG
GATGAGAGGCGCAAGAGTGTCCGAGAAGAGTGGGCGTTGCTCTGTGGCTT
GCCATGATGGAGCTTGGACCTTCTCTTGACAAGAGGTTCAGCGGAAACAT
GCTAGTCAACTTTTGAGATGCATCGCTCTGAATCGGGCAGGCTGCCAAGT
TGCCTCGACCTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1263255..1264067-

>mRNA_P-fluviatile_contig14.2141.1 ID=mRNA_P-fluviatile_contig14.2141.1|Name=mRNA_P-fluviatile_contig14.2141.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=510bp|location=Sequence derived from alignment at P-fluviatile_contig14:1263255..1264067- (Porterinema fluviatile SAG_2381)
ATGAGGAGAAAAGAGCGGGAAGGTGTGCTTCTGTACGACAGATGAGGAGA
AAAGAGCGGGAAGGTGTGCTTCTGTACGACAGTACCAAGAGTCGAAGTCG
AGTGCTGCGGTTGGAGGTGATTTGGTCGACGGTTTCTCGCGAGGAGGCGA
GGAGATTTCTGCTGTCGCGAGGCTCGATTGTCGAGCGCAGCCAAGGCCGG
CTTCTGCAGTTTGAGACGTTCCGCGCGCTATGGGCACAGGATGAGAGGCG
CAAGAGTGTCCGAGAAGAGTGGGCGTTGCTCTGTGGCTTGCCATGATACC
AAGAGTCGAAGTCGAGTGCTGCGGTTGGAGGTGATTTGGTCGACGGTTTC
TCGCGAGGAGGCGAGGAGATTTCTGCTGTCGCGAGGCTCGATTGTCGAGC
GCAGCCAAGGCCGGCTTCTGCAGTTTGAGACGTTCCGCGCGCTATGGGCA
CAGGATGAGAGGCGCAAGAGTGTCCGAGAAGAGTGGGCGTTGCTCTGTGG
CTTGCCATGA
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