mRNA_P-fluviatile_contig14.2139.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2139.1
Unique NamemRNA_P-fluviatile_contig14.2139.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1257553..1258407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.7539098-CDS-P-fluviatile_contig14:1257552..12577831622815610.7539098-CDS-P-fluviatile_contig14:1257552..1257783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1257553..1257783 -
1693562409.213927-CDS-P-fluviatile_contig14:1257552..12577831693562409.213927-CDS-P-fluviatile_contig14:1257552..1257783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1257553..1257783 -
1622815610.7689614-CDS-P-fluviatile_contig14:1258320..12584071622815610.7689614-CDS-P-fluviatile_contig14:1258320..1258407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1258321..1258407 -
1693562409.2228978-CDS-P-fluviatile_contig14:1258320..12584071693562409.2228978-CDS-P-fluviatile_contig14:1258320..1258407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1258321..1258407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2139.1prot_P-fluviatile_contig14.2139.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1257553..1258407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2139.1

>prot_P-fluviatile_contig14.2139.1 ID=prot_P-fluviatile_contig14.2139.1|Name=mRNA_P-fluviatile_contig14.2139.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
VRRRFVNTGGPGTGQVACEDPQIMDSSLQYAVAGVATALQLQPTSAFFAT
PAISPLSPSTPGENSARAGQRLPSRCRSLISSWLAGGRDKHSVNATHIET
QTLHER
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mRNA from alignment at P-fluviatile_contig14:1257553..1258407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2139.1 ID=mRNA_P-fluviatile_contig14.2139.1|Name=mRNA_P-fluviatile_contig14.2139.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=855bp|location=Sequence derived from alignment at P-fluviatile_contig14:1257553..1258407- (Porterinema fluviatile SAG_2381)
GTAAGACGTCGTTTTGTAAATACAGGCGGGCCAGGCACTGGACAAGTAGC
TTGTGAGGACCCTCAAATAATGGATTCGTCCCTTCAGGTACCATGCAAGA
AAATTTGGCGCGCTGTCGAAAACTTAGAACATGGCGATAGCAACGAACCA
TGCAGACAAGTCTAGAAGTTGTTCAGCACGTATGTTTCGAGTTCTGTCGC
CAACAGCGGTTTTCAATCGCGCTGTGCTCAACTTTCTGAGGTCCCGAGAC
ATCACTGCAAGCAAACACTCAGTACTTCTTGCATGTCACGCTGTGCAACC
AATTTCTTTGAGTCGTCAGATGCTGCAAGAGTGATCACACCAAATTCACC
CTCTAGATTGAACCCCCCCTGCGGACAGCGGACAGATTCCGTCGGTCATC
CTCACTCTGACGACCGTTGGCATTGCATGCAAATAAATCCTTACCCGTAA
ACATCATCAACTCCACCCCTTGTACTTCTTGCATGGTTTGTCCCAGTGAT
ACGTGTTTTGACTGATTCGTAGTTATCTCTCACCGAGCCCACCCCTGTGT
CGCTGCGGACTCCTGATTGTGACGCTGTCAACCTTCTCGCCTCTCTGTCG
CATTTTGCTGTACCCGCTTCTAAGTACGCTGTCGCCGGCGTCGCGACAGC
ACTTCAACTGCAGCCAACGTCTGCTTTTTTCGCGACACCTGCGATCTCAC
CTCTCTCTCCATCGACACCTGGTGAAAATTCTGCGCGGGCGGGGCAGCGA
CTACCCTCACGTTGTCGATCCTTGATATCATCGTGGCTAGCAGGCGGGCG
AGACAAGCATTCCGTGAACGCAACTCACATCGAGACGCAAACGCTACATG
AGCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1257553..1258407-

>mRNA_P-fluviatile_contig14.2139.1 ID=mRNA_P-fluviatile_contig14.2139.1|Name=mRNA_P-fluviatile_contig14.2139.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig14:1257553..1258407- (Porterinema fluviatile SAG_2381)
GTAAGACGTCGTTTTGTAAATACAGGCGGGCCAGGCACTGGACAAGTAGC
TTGTGAGGACCCTCAAATAATGGATTCGTCCCTTCAGGTAAGACGTCGTT
TTGTAAATACAGGCGGGCCAGGCACTGGACAAGTAGCTTGTGAGGACCCT
CAAATAATGGATTCGTCCCTTCAGTACGCTGTCGCCGGCGTCGCGACAGC
ACTTCAACTGCAGCCAACGTCTGCTTTTTTCGCGACACCTGCGATCTCAC
CTCTCTCTCCATCGACACCTGGTGAAAATTCTGCGCGGGCGGGGCAGCGA
CTACCCTCACGTTGTCGATCCTTGATATCATCGTGGCTAGCAGGCGGGCG
AGACAAGCATTCCGTGAACGCAACTCACATCGAGACGCAAACGCTACATG
AGCGGTACGCTGTCGCCGGCGTCGCGACAGCACTTCAACTGCAGCCAACG
TCTGCTTTTTTCGCGACACCTGCGATCTCACCTCTCTCTCCATCGACACC
TGGTGAAAATTCTGCGCGGGCGGGGCAGCGACTACCCTCACGTTGTCGAT
CCTTGATATCATCGTGGCTAGCAGGCGGGCGAGACAAGCATTCCGTGAAC
GCAACTCACATCGAGACGCAAACGCTACATGAGCGG
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