mRNA_P-fluviatile_contig14.2129.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2129.1
Unique NamemRNA_P-fluviatile_contig14.2129.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A3F2RFF9_9STRA (EF-hand domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RFF9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.000e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP +LK++TKAV+R N T   +++ FSQ +F  K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIRENPT---DLLTFSQQWFQDK 48
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A2D4C1R7_PYTIN (Radial spoke protein 11 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R7_PYTIN)

HSP 1 Score: 51.6 bits (122), Expect = 6.780e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP +LK++TKAV+R N    E+++ FS  +F  K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRGN---PEDVLQFSLQWFQEK 48
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A225VSG9_9STRA (Radial spoke protein 11 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VSG9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.410e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP +LK++TKAV+R N     +++ FSQ +F  K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPQVLKDWTKAVIREN---PGDVVAFSQQWFQDK 48
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A0P1AD84_PLAHL (Radial spoke protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD84_PLAHL)

HSP 1 Score: 51.2 bits (121), Expect = 1.050e-6
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            M++NRIF  EQI V  DLP +LK++TKAV+RAN     +++ FSQ +F  K
Sbjct:    1 MEVNRIFTAEQIAVPPDLPHVLKDWTKAVIRAN---PSDLLTFSQLWFQEK 48
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A0W8D4I7_PHYNI (Betaine aldehyde dehydrogenase 2 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D4I7_PHYNI)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP +LK++TKAV+R N T   +++ FSQ +F  K
Sbjct:  288 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRENPT---DLLAFSQQWFQDK 335
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A0W8DXL7_PHYNI (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DXL7_PHYNI)

HSP 1 Score: 52.8 bits (125), Expect = 1.200e-6
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP +LK++TKAV+R N T   +++ FSQ +F  K
Sbjct: 1613 MDVNRIFSAEQIAVPPDLPHVLKDWTKAVIRENPT---DLLAFSQQWFQDK 1660
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A8K1CE23_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE23_PYTOL)

HSP 1 Score: 50.4 bits (119), Expect = 1.900e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP ++KE+TK+V+R N    E+++ FS  +F  K
Sbjct:    1 MDVNRIFSAEQIAVPPDLPHVIKEWTKSVIREN---PEDVLYFSLKWFQDK 48
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A8J5J0P0_9STRA (J domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J0P0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.240e-6
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHHK 153
            MD+NRIF  EQI V  DLP +LK++TKAV+R N T   +++ FSQ +F  K
Sbjct:  870 MDVNRIFSAEQIAVPPDLPHMLKDWTKAVIRENPT---DLLAFSQQWFQDK 917
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: A0A3R7D617_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D617_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.570e-6
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYF 144
            MD+NRIF  EQIEV  DLP +LKE+TK V+R   T+ +++ +FS  +F
Sbjct:    1 MDVNRIFSAEQIEVPPDLPLVLKEWTKDVIR---TSPDDLAVFSLQWF 45
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BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Match: J9IR88_9SPIT (Protein kinase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IR88_9SPIT)

HSP 1 Score: 51.2 bits (121), Expect = 4.170e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   13 RIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYF 144
            RIF  EQI VH++LP ILK Y+K V+R N    E++I FS+NYF
Sbjct:    8 RIFSAEQIVVHQELPAILKNYSKEVIRKN---PEDVIAFSRNYF 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A3F2RFF9_9STRA3.000e-752.94EF-hand domain-containing protein n=9 Tax=Phytopht... [more]
A0A2D4C1R7_PYTIN6.780e-750.98Radial spoke protein 11 n=1 Tax=Pythium insidiosum... [more]
A0A225VSG9_9STRA7.410e-750.98Radial spoke protein 11 n=1 Tax=Phytophthora megak... [more]
A0A0P1AD84_PLAHL1.050e-650.98Radial spoke protein 11 n=1 Tax=Plasmopara halsted... [more]
A0A0W8D4I7_PHYNI1.190e-652.94Betaine aldehyde dehydrogenase 2 n=1 Tax=Phytophth... [more]
A0A0W8DXL7_PHYNI1.200e-652.94Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A8K1CE23_PYTOL1.900e-649.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J5J0P0_9STRA2.240e-652.94J domain-containing protein n=1 Tax=Phytophthora a... [more]
A0A3R7D617_9STRA2.570e-652.08EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
J9IR88_9SPIT4.170e-656.82Protein kinase domain containing protein n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1186812..1187544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-01_006490.1
Exons2
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.6993492-CDS-P-fluviatile_contig14:1186811..11868501622815609.6993492-CDS-P-fluviatile_contig14:1186811..1186850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1186812..1186850 +
1693562408.4507902-CDS-P-fluviatile_contig14:1186811..11868501693562408.4507902-CDS-P-fluviatile_contig14:1186811..1186850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1186812..1186850 +
1622815609.7130852-CDS-P-fluviatile_contig14:1187430..11875441622815609.7130852-CDS-P-fluviatile_contig14:1187430..1187544Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1187431..1187544 +
1693562408.4709523-CDS-P-fluviatile_contig14:1187430..11875441693562408.4709523-CDS-P-fluviatile_contig14:1187430..1187544Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1187431..1187544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2129.1prot_P-fluviatile_contig14.2129.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1186812..1187544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2129.1

>prot_P-fluviatile_contig14.2129.1 ID=prot_P-fluviatile_contig14.2129.1|Name=mRNA_P-fluviatile_contig14.2129.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=51bp
MDLNRIFMPEQIEVHKDLPGILKEYTKAVLRANLTTEEEIILFSQNYFHH
K
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mRNA from alignment at P-fluviatile_contig14:1186812..1187544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2129.1 ID=mRNA_P-fluviatile_contig14.2129.1|Name=mRNA_P-fluviatile_contig14.2129.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=733bp|location=Sequence derived from alignment at P-fluviatile_contig14:1186812..1187544+ (Porterinema fluviatile SAG_2381)
ATGGATCTTAACCGCATTTTCATGCCTGAGCAAATAGAGGTGAGCCAAGT
GGAAAACATTTTTTTTGGCGAGAGCCACATATCTCCGAAAGACACGCTCG
TCGGAGACCTCTGATTGTTATGCGTTTCCATCTGCAAAGCCCTAGCCCTT
GCTTCTCTTCTTCATCCAAAAGGCTCTCGCGCTGGCAGTACGTGGAGATT
TCAAGATGAGTCGAACTTAAATTTGCATCACCTTGTTCACAACCAATAAG
GAATCGCGCCAAAGGACAGGAACATAATTGTCTCCACGCCCCATGCCCGT
GGGACACAAGGGGCCCATAGCTAAATCTAAAGGTAACTTACAATCAAAGC
ACCGCGCGCCAATACATCGCCTACTTCTTCACTTCCTCAAATTTTTCATC
AAGAAACGGTCCATCTTGAGGTGACTCCTGGTTTTTGTGCTCTAGATTGG
AGAGCGGTCCACGATCTTGGCGCACCCGGTCCATATCAAATTGACTTTCT
CGTCGTCTGTCGTTCCCTCTTCAGACGCCACGTTTTCTTGGCCGTTGACT
TCGTACACTGCCGATCATCCTGTGTTTCCATCGTTTCTCGCTGAACGCTA
CCATGACCTGCTGCCGAAGGTTCATAAAGATCTGCCAGGAATTTTGAAGG
AATACACGAAGGCCGTTCTCCGCGCAAACCTCACTACCGAGGAGGAAATA
ATATTGTTTTCTCAAAACTACTTCCACCACAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1186812..1187544+

>mRNA_P-fluviatile_contig14.2129.1 ID=mRNA_P-fluviatile_contig14.2129.1|Name=mRNA_P-fluviatile_contig14.2129.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=306bp|location=Sequence derived from alignment at P-fluviatile_contig14:1186812..1187544+ (Porterinema fluviatile SAG_2381)
ATGGATCTTAACCGCATTTTCATGCCTGAGCAAATAGAGATGGATCTTAA
CCGCATTTTCATGCCTGAGCAAATAGAGGTTCATAAAGATCTGCCAGGAA
TTTTGAAGGAATACACGAAGGCCGTTCTCCGCGCAAACCTCACTACCGAG
GAGGAAATAATATTGTTTTCTCAAAACTACTTCCACCACAAAGTTCATAA
AGATCTGCCAGGAATTTTGAAGGAATACACGAAGGCCGTTCTCCGCGCAA
ACCTCACTACCGAGGAGGAAATAATATTGTTTTCTCAAAACTACTTCCAC
CACAAA
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