mRNA_P-fluviatile_contig14.2111.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2111.1
Unique NamemRNA_P-fluviatile_contig14.2111.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2111.1 vs. uniprot
Match: D7FQF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF3_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 7.250e-68
Identity = 170/405 (41.98%), Postives = 206/405 (50.86%), Query Frame = 1 
Query:    1 GLESIKTALLTAHGDVRLQCKAANALASLCMSEDVARSFSTAPDGLTVVDRLGDMLRSRSQWAQADAASCLGWLMLAIQNHGTVLHELVPLVTQLMAKHTVTDDETFIREEGKRDDRAMPRGSNRGSKTVGGWGTSRTPG--GGASSGGGKGENEEDQARERMDNIRVYTLIFLLKASHADPSTMPAMAKAGAIPGLLKHLASASQEPRSAQQPQPRQLQHKQLQQQQQPSRHHESFGAREKGEDCKRRGSGGPLDGSGGAVDRGTANQPSPSLLLAARLLYAFSMDPAVRVSLLDARALPPLIRLKRRLEGPRA-----------TYAKTHPVYARSIEPGGKGDPAAA---------AEQESGDGNVDVSNCCAEQIEDDTGQPPLAE----MVGLIIDQMVG 1137
            GLE++K ALL  H D+RLQCKAANALASLCMSE+VAR F+ AP+   VVDRLGDMLRSRSQWAQADAA CLGWL+  +   GT LHEL+PLVT+LM +HT  DDE FI EE +R+ +A+             WG SR+    G          ++EDQARERMDNIRVY+LIFLLK   AD        +A  +                                          FG R  G D      G   DG G        +Q  PSLLLAARLLYA S+DP  R SLL+A+ LPPLIRL+R+L    A           T A   P    +  P G    +AA          E+E   GN    +   +    D+   P  E    +V LI+DQ+VG
Sbjct:   17 GLEAVKDALLKTHADIRLQCKAANALASLCMSEEVARGFTAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLVGTLAG-GTALHELIPLVTRLMVRHTTKDDEVFISEERQREQQAV-------------WGRSRSSNSRGXXXXXXXXXXDKEDQARERMDNIRVYSLIFLLKKQEADS------VRARGV------------------------------------------FGQRHHGTD------GNAADGGG--------DQTPPSLLLAARLLYAISLDPGGRSSLLEAKCLPPLIRLRRQLHTEAAAEATXXXXXXXTTAAVQPALECTKIPAGPNSGSAAFARKGGTEEVEKEGFVGNQQAQHSGGDVATGDSSSEPDVEGIEVIVSLIVDQLVG 345
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BLAST of mRNA_P-fluviatile_contig14.2111.1 vs. uniprot
Match: A0A5D6YD55_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD55_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.080e-5
Identity = 49/166 (29.52%), Postives = 67/166 (40.36%), Query Frame = 1 
Query:   43 DVRLQCKAANALASLCMSEDVARSFSTAPDGLTVVDRLGDMLRSRSQWAQADAASCLGWLMLAIQNHGTV-LHELVPLVTQLMAKHTVTDDETFIREEGKRDDRAMPRGSNRGSKTVGGWGTSRTPGGGASSGGGKGENEEDQARERMDNIRVYTLIFLLKASHAD 537
            DVRL+CKAA+AL SLC+S  VA        G   +  L  M  SR++WAQADA + LGW+++         +  L+P V   +       D     +E                   GG G  R              + E  + E   N+RVY L+ LL     D
Sbjct:  110 DVRLKCKAASALGSLCVSR-VAGQRLLELHGAAALRSLARMATSRNRWAQADALAVLGWVVVIADERALAQVARLLPAVVATLRASVARGDAANDGDEEH--------------SATGGXGLRR-------------RHAEAASTEDASNLRVYALVLLLNFLQRD 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQF3_ECTSI7.250e-6841.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6YD55_9STRA2.080e-529.52Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1052699..1055378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog2880.D7FQF3
EggNOG OGs28MT9@1,2QUBJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1430
Cds size1101
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2111.1prot_P-fluviatile_contig14.2111.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1052938..1055288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.4346068-UTR-P-fluviatile_contig14:1052698..10529371622815607.4346068-UTR-P-fluviatile_contig14:1052698..1052937Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1052699..1052937 -
1693562398.8157313-UTR-P-fluviatile_contig14:1052698..10529371693562398.8157313-UTR-P-fluviatile_contig14:1052698..1052937Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1052699..1052937 -
1622815607.4993024-UTR-P-fluviatile_contig14:1055288..10553781622815607.4993024-UTR-P-fluviatile_contig14:1055288..1055378Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1055289..1055378 -
1693562398.8680937-UTR-P-fluviatile_contig14:1055288..10553781693562398.8680937-UTR-P-fluviatile_contig14:1055288..1055378Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1055289..1055378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.4455109-CDS-P-fluviatile_contig14:1052937..10532621622815607.4455109-CDS-P-fluviatile_contig14:1052937..1053262Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1052938..1053262 -
1693562398.829036-CDS-P-fluviatile_contig14:1052937..10532621693562398.829036-CDS-P-fluviatile_contig14:1052937..1053262Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1052938..1053262 -
1622815607.4586537-CDS-P-fluviatile_contig14:1053662..10540061622815607.4586537-CDS-P-fluviatile_contig14:1053662..1054006Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1053663..1054006 -
1693562398.8397467-CDS-P-fluviatile_contig14:1053662..10540061693562398.8397467-CDS-P-fluviatile_contig14:1053662..1054006Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1053663..1054006 -
1622815607.4716063-CDS-P-fluviatile_contig14:1054294..10546641622815607.4716063-CDS-P-fluviatile_contig14:1054294..1054664Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1054295..1054664 -
1693562398.8495514-CDS-P-fluviatile_contig14:1054294..10546641693562398.8495514-CDS-P-fluviatile_contig14:1054294..1054664Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1054295..1054664 -
1622815607.483684-CDS-P-fluviatile_contig14:1055226..10552881622815607.483684-CDS-P-fluviatile_contig14:1055226..1055288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1055227..1055288 -
1693562398.859003-CDS-P-fluviatile_contig14:1055226..10552881693562398.859003-CDS-P-fluviatile_contig14:1055226..1055288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1055227..1055288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2111.1

>prot_P-fluviatile_contig14.2111.1 ID=prot_P-fluviatile_contig14.2111.1|Name=mRNA_P-fluviatile_contig14.2111.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=367bp
MSEDVARSFSTAPDGLTVVDRLGDMLRSRSQWAQADAASCLGWLMLAIQN
HGTVLHELVPLVTQLMAKHTVTDDETFIREEGKRDDRAMPRGSNRGSKTV
GGWGTSRTPGGGASSGGGKGENEEDQARERMDNIRVYTLIFLLKASHADP
STMPAMAKAGAIPGLLKHLASASQEPRSAQQPQPRQLQHKQLQQQQQPSR
HHESFGAREKGEDCKRRGSGGPLDGSGGAVDRGTANQPSPSLLLAARLLY
AFSMDPAVRVSLLDARALPPLIRLKRRLEGPRATYAKTHPVYARSIEPGG
KGDPAAAAEQESGDGNVDVSNCCAEQIEDDTGQPPLAEMVGLIIDQMVGS
RASSAARGTKAPAYIK*
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mRNA from alignment at P-fluviatile_contig14:1052699..1055378-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2111.1 ID=mRNA_P-fluviatile_contig14.2111.1|Name=mRNA_P-fluviatile_contig14.2111.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2680bp|location=Sequence derived from alignment at P-fluviatile_contig14:1052699..1055378- (Porterinema fluviatile SAG_2381)
GGGCTCGAGTCCATTAAGACCGCGCTGCTGACAGCGCACGGCGATGTGAG
GTTGCAGTGCAAGGCGGCAAACGCTCTGGCCTCGTTGTGCATGTCTGAGG
ACGTCGCAAGAAGCTTCTCGACAGCTCCGGATGGATTGACTGTGGTTGAC
AGGTGATGCATTAGCCCTATGTTGACTCATATCCGTGTTGTACTGAAGCG
CTCTCGAGCGACGCTCTTTGCCACATGGCCATTCACGCAACACTTAGCAG
GTTTATCCACGCACAGACGTATACATGAACCTTATCTCGGCTTGGCCGTC
GGTGTAAGGGGACTTTGATTTATCCGCTTTCCCTTCGGTTTTGAAACCTG
TTTCGGTGTGATACGTGACGCGAGCGTGTATTTCGAAAGCAAAGCAGCGC
CTTCCCCCAACGGGTAACCGGAACACTGGCTCCTTTTGTGTCCTCACGAG
CAACTGAAATCGGACCACACCGCTTCGCAGATTTCTCTCGTCGACGAAAC
GAACCGTCGACACGATCTTCGAAGTTCACCGTGTTTATTCGAGTGCTTCG
CAGCTGTGACGCTGCTGCCCCAGCCAAACGCTTTTGGGAAACCCTATATT
CTACTCAAACCTTTTCGTCAGCGCCTCATCTACTCAAACCTATTCGTCGC
ACCGGACTCACAGGTGTTGATTAACGCTTGCTGTCAATCCCCGGGCCTTT
CCTTGCCCCTACAGACTCGGTGACATGCTGAGATCGCGCAGCCAGTGGGC
CCAGGCGGATGCGGCGTCATGTCTTGGGTGGCTGATGTTGGCGATCCAAA
ACCATGGTACGGTCCTGCATGAGCTGGTGCCCCTTGTGACGCAGCTGATG
GCGAAGCACACCGTTACCGACGACGAGACTTTCATCCGTGAGGAGGGGAA
GCGGGATGACCGGGCTATGCCTAGGGGCAGCAATCGCGGCAGCAAGACCG
TGGGCGGTTGGGGTACTAGCCGTACACCGGGTGGTGGTGCCAGCAGTGGT
GGAGGCAAGGGGGAGAACGAAGAGGACCAGGCGCGGGAGCGCATGGATAA
CATTCGGGTTTACACTCTCATTTTCCTGCTCAAAGTGAGACTTGGTTTCA
GCTCGCTTGGGATGGGTGCCTGCCCGGGTAGGGGTAGGAGAGGAGGAAGG
GTGTTCAGTTACAACACGGCCGGGCTTTACTCGCGCGGTTGGAGTACTCG
GGCGTGTTTGAGCTGTGCGCTGCGGTACCTATTGAAAAGTTTTGCACTCG
CGCGGACTGCAAGATCCGCGCCATTCTCCGTGGTGAAGTTCGTCTTCCCG
CTCGACGACATCTTCCTATAAGGGTTTCACGCACGTCTCTTTTTTCTTGT
TCTTCTGGTGAAAACAACGCAGGCCTCGCACGCGGACCCGTCGACGATGC
CGGCCATGGCGAAAGCGGGGGCCATCCCAGGGCTGTTGAAACACCTCGCA
AGCGCCAGCCAGGAACCGCGCTCCGCACAGCAGCCGCAGCCGCGGCAGCT
GCAGCACAAACAGCTGCAGCAGCAGCAGCAGCCTTCGAGGCACCACGAAT
CTTTCGGTGCGCGCGAGAAAGGTGAAGATTGCAAGCGCCGCGGATCAGGC
GGACCCTTGGACGGATCAGGCGGAGCCGTTGACCGTGGGACGGCCAACCA
GCCGTCCCCGTCTCTGCTGCTGGCGGCGCGGCTTCTGTACGCCTTCTCGA
TGGACCCGGCCGTACGGTGCGATCAGAGACTGCTATTTGTGGTACGGGCT
GTCCGAACGAGGCTGCCTGTACAACAGGAGTCATGCTGAAGTTTAATCGA
GAAGCACAGGCATTCAGGATGGACGCGGAAGTCATGCCAAGCCGGAAATT
CCAACGTGTTTTTCCTTTTCCTTTTTGACGAAACGAGTGAAGGATACACA
CGCTGCCGGATCCAGGTTCACGCGAGTTGCAGGTTGAGGCATCGTTGCTC
CAACGCTGATGCCAGCAATTAGAGAGCGTGAGCATCAATTTATCGAATGT
CCTGAATGCCCCGTCTCTGCTGGTTTCTCATTGATGGTCAACAAGAAAGC
GGTCGAATTCGGTGTGTTTCCCCTTTAATTTGTCGTTTGCTGCGTTCATG
CCATATCATGGAGCAGGGTCTCTCTTCTGGACGCCAGGGCTCTACCGCCA
CTCATCCGCCTCAAGCGACGACTCGAGGGACCAAGAGCCACCTATGCCAA
AACTCACCCCGTATACGCGAGAAGTATAGAACCGGGCGGCAAGGGCGACC
CAGCAGCGGCAGCAGAACAGGAGTCTGGGGATGGAAATGTCGACGTTAGC
AATTGTTGTGCGGAGCAAATAGAGGACGACACCGGGCAGCCACCTCTCGC
GGAAATGGTTGGCTTAATCATCGACCAGATGGTGGGCAGTAGAGCTTCTT
CGGCAGCGAGGGGTACGAAGGCACCAGCATATATAAAATAGAGTAATCAG
CTGTGTTGTCAGCTGCTTTATTGTTACCCTGGTACCCATGGTTTGTTCTG
TGATCAAGGAAAATCCAGTATCACACCTACCTGAAGCAAAGTTGCCCACA
GCTTTGTTGTGGGCATTCGGGGCCTGTTTGAATTCTGGCAGAACACTCCT
CAACGGGTGTTCAAGTCTACGAATGCTAGACTCGTGGCCACTCATTGGAA
GAGAAATGCAATTTGGTGGAGATGGAGGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1052699..1055378-

>mRNA_P-fluviatile_contig14.2111.1 ID=mRNA_P-fluviatile_contig14.2111.1|Name=mRNA_P-fluviatile_contig14.2111.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2202bp|location=Sequence derived from alignment at P-fluviatile_contig14:1052699..1055378- (Porterinema fluviatile SAG_2381)
ATGTCTGAGGACGTCGCAAGAAGCTTCTCGACAGCTCCGGATGGATTGAC
TGTGGTTGACAGATGTCTGAGGACGTCGCAAGAAGCTTCTCGACAGCTCC
GGATGGATTGACTGTGGTTGACAGACTCGGTGACATGCTGAGATCGCGCA
GCCAGTGGGCCCAGGCGGATGCGGCGTCATGTCTTGGGTGGCTGATGTTG
GCGATCCAAAACCATGGTACGGTCCTGCATGAGCTGGTGCCCCTTGTGAC
GCAGCTGATGGCGAAGCACACCGTTACCGACGACGAGACTTTCATCCGTG
AGGAGGGGAAGCGGGATGACCGGGCTATGCCTAGGGGCAGCAATCGCGGC
AGCAAGACCGTGGGCGGTTGGGGTACTAGCCGTACACCGGGTGGTGGTGC
CAGCAGTGGTGGAGGCAAGGGGGAGAACGAAGAGGACCAGGCGCGGGAGC
GCATGGATAACATTCGGGTTTACACTCTCATTTTCCTGCTCAAAACTCGG
TGACATGCTGAGATCGCGCAGCCAGTGGGCCCAGGCGGATGCGGCGTCAT
GTCTTGGGTGGCTGATGTTGGCGATCCAAAACCATGGTACGGTCCTGCAT
GAGCTGGTGCCCCTTGTGACGCAGCTGATGGCGAAGCACACCGTTACCGA
CGACGAGACTTTCATCCGTGAGGAGGGGAAGCGGGATGACCGGGCTATGC
CTAGGGGCAGCAATCGCGGCAGCAAGACCGTGGGCGGTTGGGGTACTAGC
CGTACACCGGGTGGTGGTGCCAGCAGTGGTGGAGGCAAGGGGGAGAACGA
AGAGGACCAGGCGCGGGAGCGCATGGATAACATTCGGGTTTACACTCTCA
TTTTCCTGCTCAAAGCCTCGCACGCGGACCCGTCGACGATGCCGGCCATG
GCGAAAGCGGGGGCCATCCCAGGGCTGTTGAAACACCTCGCAAGCGCCAG
CCAGGAACCGCGCTCCGCACAGCAGCCGCAGCCGCGGCAGCTGCAGCACA
AACAGCTGCAGCAGCAGCAGCAGCCTTCGAGGCACCACGAATCTTTCGGT
GCGCGCGAGAAAGGTGAAGATTGCAAGCGCCGCGGATCAGGCGGACCCTT
GGACGGATCAGGCGGAGCCGTTGACCGTGGGACGGCCAACCAGCCGTCCC
CGTCTCTGCTGCTGGCGGCGCGGCTTCTGTACGCCTTCTCGATGGACCCG
GCCGTACGGCCTCGCACGCGGACCCGTCGACGATGCCGGCCATGGCGAAA
GCGGGGGCCATCCCAGGGCTGTTGAAACACCTCGCAAGCGCCAGCCAGGA
ACCGCGCTCCGCACAGCAGCCGCAGCCGCGGCAGCTGCAGCACAAACAGC
TGCAGCAGCAGCAGCAGCCTTCGAGGCACCACGAATCTTTCGGTGCGCGC
GAGAAAGGTGAAGATTGCAAGCGCCGCGGATCAGGCGGACCCTTGGACGG
ATCAGGCGGAGCCGTTGACCGTGGGACGGCCAACCAGCCGTCCCCGTCTC
TGCTGCTGGCGGCGCGGCTTCTGTACGCCTTCTCGATGGACCCGGCCGTA
CGGGTCTCTCTTCTGGACGCCAGGGCTCTACCGCCACTCATCCGCCTCAA
GCGACGACTCGAGGGACCAAGAGCCACCTATGCCAAAACTCACCCCGTAT
ACGCGAGAAGTATAGAACCGGGCGGCAAGGGCGACCCAGCAGCGGCAGCA
GAACAGGAGTCTGGGGATGGAAATGTCGACGTTAGCAATTGTTGTGCGGA
GCAAATAGAGGACGACACCGGGCAGCCACCTCTCGCGGAAATGGTTGGCT
TAATCATCGACCAGATGGTGGGCAGTAGAGCTTCTTCGGCAGCGAGGGGT
ACGAAGGCACCAGCATATATAAAATAGGGTCTCTCTTCTGGACGCCAGGG
CTCTACCGCCACTCATCCGCCTCAAGCGACGACTCGAGGGACCAAGAGCC
ACCTATGCCAAAACTCACCCCGTATACGCGAGAAGTATAGAACCGGGCGG
CAAGGGCGACCCAGCAGCGGCAGCAGAACAGGAGTCTGGGGATGGAAATG
TCGACGTTAGCAATTGTTGTGCGGAGCAAATAGAGGACGACACCGGGCAG
CCACCTCTCGCGGAAATGGTTGGCTTAATCATCGACCAGATGGTGGGCAG
TAGAGCTTCTTCGGCAGCGAGGGGTACGAAGGCACCAGCATATATAAAAT
AG
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