mRNA_P-fluviatile_contig14.2107.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2107.1
Unique NamemRNA_P-fluviatile_contig14.2107.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2107.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.380e-44
Identity = 98/199 (49.25%), Postives = 125/199 (62.81%), Query Frame = 1 
Query:    1 IQQNGAGGGGA-LQDTALSFTGVVAITTFFCCSTMSCVALCIKLVTWMFGHRGRR-RIPLLPYGQQRDHYDYKDEEGIYPHPPRPVIVLDTNPAGRQKGYATNTSDIELRQVPFGHVEEWRRVHDGGGERMXXXXXXXXXAELSKKRGGKEEMWHSGKGTRLAAVLSRDTTNG-STMTRTDTPSVNDEGWERLSLGSVA 588
            + +NGAGGGG  L++TALSFTG+V+I TF CCSTMSCVALCIKL +WMFGHRGRR R+PLLP+ QQ D     +E+  YPH  +PVI+LDTNPA ++ G     S+IELRQVPFG++E  R   +               A+ +K     ++  H  KG+  A+ + RDTT G S MTR  TPS N E  +    G  A
Sbjct:    1 MDENGAGGGGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQND--GEAEEQLYYPHQ-QPVIILDTNPAEQRSGCTLRASEIELRQVPFGNLEAQRETKNSDVNDDDVGFRTGAQADPNKI----QKQQHL-KGS--ASRMERDTTTGTSIMTRAGTPSTNGEQEDSCDFGEEA 189
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BLAST of mRNA_P-fluviatile_contig14.2107.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.420e-44
Identity = 97/199 (48.74%), Postives = 125/199 (62.81%), Query Frame = 1 
Query:    1 IQQNGAGGGGA-LQDTALSFTGVVAITTFFCCSTMSCVALCIKLVTWMFGHRGRR-RIPLLPYGQQRDHYDYKDEEGIYPHPPRPVIVLDTNPAGRQKGYATNTSDIELRQVPFGHVEEWRRVHDGGGERMXXXXXXXXXAELSKKRGGKEEMWHSGKGTRLAAVLSRDTTNG-STMTRTDTPSVNDEGWERLSLGSVA 588
            + +NGAGGGG  L++TALSFTG+++I TF CCSTMSCVALCIKL +WMFGHRGRR R+PLLP+ QQ D    + EE +Y    +PVI+LDTN A ++ GY  + S+IELRQVPFG++E  R   +               A+ +K R    +  H  KG+  A+ + RDTT G S MTR  TPS N E  +    G  A
Sbjct:    1 MDENGAGGGGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDG---EAEEQLYSPHHQPVIILDTNSAEKRSGYTLHASEIELRQVPFGNLEAQRETKNSDDGDDDVVFLTGAQADPNKIR----KQQHL-KGS--ASQMERDTTTGTSIMTRAGTPSTNGEQEDSSDFGEEA 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQF6_ECTSI1.380e-4449.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCN9_9PHAE1.420e-4448.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1031274..1031936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006310.1
Exons1
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.075467-CDS-P-fluviatile_contig14:1031273..10319361622815607.075467-CDS-P-fluviatile_contig14:1031273..1031936Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1031274..1031936 -
1693562394.5802238-CDS-P-fluviatile_contig14:1031273..10319361693562394.5802238-CDS-P-fluviatile_contig14:1031273..1031936Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1031274..1031936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2107.1prot_P-fluviatile_contig14.2107.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1031274..1031936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2107.1

>prot_P-fluviatile_contig14.2107.1 ID=prot_P-fluviatile_contig14.2107.1|Name=mRNA_P-fluviatile_contig14.2107.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=221bp
IQQNGAGGGGALQDTALSFTGVVAITTFFCCSTMSCVALCIKLVTWMFGH
RGRRRIPLLPYGQQRDHYDYKDEEGIYPHPPRPVIVLDTNPAGRQKGYAT
NTSDIELRQVPFGHVEEWRRVHDGGGERMAAAAAAAAEAELSKKRGGKEE
MWHSGKGTRLAAVLSRDTTNGSTMTRTDTPSVNDEGWERLSLGSVAGDEE
SRDDDPKGRRGEQEEEKEERG
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mRNA from alignment at P-fluviatile_contig14:1031274..1031936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2107.1 ID=mRNA_P-fluviatile_contig14.2107.1|Name=mRNA_P-fluviatile_contig14.2107.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=663bp|location=Sequence derived from alignment at P-fluviatile_contig14:1031274..1031936- (Porterinema fluviatile SAG_2381)
ATCCAACAGAATGGAGCTGGCGGCGGCGGCGCGCTCCAAGACACAGCTCT
GTCCTTCACAGGAGTCGTCGCCATTACTACCTTTTTCTGCTGCTCGACCA
TGTCGTGCGTCGCGCTGTGCATCAAGCTCGTCACTTGGATGTTTGGGCAC
CGCGGCAGGCGGAGGATCCCCCTCCTGCCCTACGGGCAGCAGCGCGACCA
CTACGACTACAAGGACGAAGAAGGGATTTACCCGCACCCACCGCGGCCGG
TCATCGTTCTGGACACCAACCCCGCTGGGCGGCAGAAGGGATACGCCACG
AACACGTCGGATATCGAGCTTCGACAGGTGCCGTTCGGACACGTCGAGGA
GTGGCGGAGGGTACACGACGGCGGTGGGGAACGAATGGCGGCAGCGGCAG
CAGCGGCAGCAGAAGCAGAATTGTCGAAGAAGCGCGGAGGGAAGGAGGAA
ATGTGGCATAGCGGCAAGGGCACCCGCCTCGCTGCCGTCCTTTCTCGTGA
TACGACGAATGGGTCAACGATGACACGCACCGACACGCCGTCGGTGAATG
ACGAAGGTTGGGAGCGGCTATCTCTCGGCTCTGTTGCTGGTGATGAGGAG
TCGCGCGACGACGATCCCAAAGGTCGACGTGGCGAGCAGGAGGAGGAGAA
AGAGGAGAGGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1031274..1031936-

>mRNA_P-fluviatile_contig14.2107.1 ID=mRNA_P-fluviatile_contig14.2107.1|Name=mRNA_P-fluviatile_contig14.2107.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1326bp|location=Sequence derived from alignment at P-fluviatile_contig14:1031274..1031936- (Porterinema fluviatile SAG_2381)
ATCCAACAGAATGGAGCTGGCGGCGGCGGCGCGCTCCAAGACACAGCTCT
GTCCTTCACAGGAGTCGTCGCCATTACTACCTTTTTCTGCTGCTCGACCA
TGTCGTGCGTCGCGCTGTGCATCAAGCTCGTCACTTGGATGTTTGGGCAC
CGCGGCAGGCGGAGGATCCCCCTCCTGCCCTACGGGCAGCAGCGCGACCA
CTACGACTACAAGGACGAAGAAGGGATTTACCCGCACCCACCGCGGCCGG
TCATCGTTCTGGACACCAACCCCGCTGGGCGGCAGAAGGGATACGCCACG
AACACGTCGGATATCGAGCTTCGACAGGTGCCGTTCGGACACGTCGAGGA
GTGGCGGAGGGTACACGACGGCGGTGGGGAACGAATGGCGGCAGCGGCAG
CAGCGGCAGCAGAAGCAGAATTGTCGAAGAAGCGCGGAGGGAAGGAGGAA
ATGTGGCATAGCGGCAAGGGCACCCGCCTCGCTGCCGTCCTTTCTCGTGA
TACGACGAATGGGTCAACGATGACACGCACCGACACGCCGTCGGTGAATG
ACGAAGGTTGGGAGCGGCTATCTCTCGGCTCTGTTGCTGGTGATGAGGAG
TCGCGCGACGACGATCCCAAAGGTCGACGTGGCGAGCAGGAGGAGGAGAA
AGAGGAGAGGGGGATCCAACAGAATGGAGCTGGCGGCGGCGGCGCGCTCC
AAGACACAGCTCTGTCCTTCACAGGAGTCGTCGCCATTACTACCTTTTTC
TGCTGCTCGACCATGTCGTGCGTCGCGCTGTGCATCAAGCTCGTCACTTG
GATGTTTGGGCACCGCGGCAGGCGGAGGATCCCCCTCCTGCCCTACGGGC
AGCAGCGCGACCACTACGACTACAAGGACGAAGAAGGGATTTACCCGCAC
CCACCGCGGCCGGTCATCGTTCTGGACACCAACCCCGCTGGGCGGCAGAA
GGGATACGCCACGAACACGTCGGATATCGAGCTTCGACAGGTGCCGTTCG
GACACGTCGAGGAGTGGCGGAGGGTACACGACGGCGGTGGGGAACGAATG
GCGGCAGCGGCAGCAGCGGCAGCAGAAGCAGAATTGTCGAAGAAGCGCGG
AGGGAAGGAGGAAATGTGGCATAGCGGCAAGGGCACCCGCCTCGCTGCCG
TCCTTTCTCGTGATACGACGAATGGGTCAACGATGACACGCACCGACACG
CCGTCGGTGAATGACGAAGGTTGGGAGCGGCTATCTCTCGGCTCTGTTGC
TGGTGATGAGGAGTCGCGCGACGACGATCCCAAAGGTCGACGTGGCGAGC
AGGAGGAGGAGAAAGAGGAGAGGGGG
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