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Homology
BLAST of mRNA_P-fluviatile_contig14.2063.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 264 bits (675), Expect = 1.560e-74 Identity = 180/428 (42.06%), Postives = 201/428 (46.96%), Query Frame = 2
Query: 125 ETPSANDVGCFEEDSGGSSGRRSATTGATSKPLNPLSVLKVFLESRVMLRCACSYFLFVLSLNVFASGYNYVDYRFHWTPPEISYFFATYNICMALAGGWAIRGIVPERLSEENGALFGISVQVVFGHFFFTIALGFPI*WLQKLL*NEW*K***HFRCCRCPSSSIXXXXXXXXXXXXXXXXXXXXVCSVDKITTCLSYSIQSSQFSFVLAQPKNHIMCIHRKEDHTY*RPDSPFFIPVNPVKSSQPASFPTSRLRASHKVFAVTVSGLCFRGWMLYPALAFGALQNITEPCLQAVMATFVEADRQGGLQGAVMSLRVIGEGFAAPLFNQAFSAGSSAGFEEAPFLLATIFSLAGLAVRKGSITLSEIAWGRRARYRKVAWLPLRRLDKRKSHL-------PRRGSVTTPTTVGYQAAADGTRGIAE 1387
E ++ D +++D +G R + K LNPLSVLKVFLESR +LR ACSYFLFVLSLNVFA+GYNYVDYRF WTP EISYFFATYNI MALAGGW IR IVP+RL+EE GALFGISVQV F+V VSGLCFRGWMLYPAL FGALQNITEPCLQA+MATFV + QG LQGAVMSLRV+GEG AAP+F Q FSAG+S GFEEAPF LAT SL LA VAW PLR+LDK K+ + PR TP AA D + AE
Sbjct: 314 EATASVDSFVWDDDGKQGAGGRGRARRSGRKQLNPLSVLKVFLESRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQV------------------------------------------------------------------------------------------------------------------------------------------FSVMVSGLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEAPFFLATAISLVSLA---------------------VAWWPLRKLDKTKNIVLPDHDASPRGWEPPTPAPTRAPAAGDEVQHAAE 582
BLAST of mRNA_P-fluviatile_contig14.2063.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 102 bits (255), Expect = 4.350e-19 Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 2
Query: 167 SGGSSGRRSATTGATSKPLNPLSVLKVFLESRVMLRCACSYFLFVLSLNVFASGYNYVDYRFHWTPPEISYFFATYNICMALAGGWAIRGIVPERLSEENGALFGISVQ 493
S G ++ G++S+ +NP SVLKVFLES ++++ A F LSLNVF+ YNY D+R+HW+P +IS FF+T+ I +AL G IR +VP+RLS G L G+++Q
Sbjct: 253 SAGGGWKKLCARGSSSRIVNPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQ 361
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 68.6 |
| Seed ortholog evalue | 4.1e-09 |
| Seed eggNOG ortholog | 2880.D7FNH6 |
| EggNOG free text desc. | folate import across plasma membrane |
| EggNOG OGs | KOG2816@1,KOG2816@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2231 |
| Cds size | 633 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815600.7737024-UTR-P-fluviatile_contig14:627927..628576 | 1622815600.7737024-UTR-P-fluviatile_contig14:627927..628576 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 627928..628576 - |
| 1693562388.1813583-UTR-P-fluviatile_contig14:627927..628576 | 1693562388.1813583-UTR-P-fluviatile_contig14:627927..628576 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 627928..628576 - |
| 1622815600.8464203-UTR-P-fluviatile_contig14:631641..632329 | 1622815600.8464203-UTR-P-fluviatile_contig14:631641..632329 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 631642..632329 - |
| 1693562388.2238803-UTR-P-fluviatile_contig14:631641..632329 | 1693562388.2238803-UTR-P-fluviatile_contig14:631641..632329 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 631642..632329 - |
| 1622815600.8571491-UTR-P-fluviatile_contig14:632697..632958 | 1622815600.8571491-UTR-P-fluviatile_contig14:632697..632958 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 632698..632958 - |
| 1693562388.2322562-UTR-P-fluviatile_contig14:632697..632958 | 1693562388.2322562-UTR-P-fluviatile_contig14:632697..632958 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 632698..632958 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815600.7852323-CDS-P-fluviatile_contig14:628576..628897 | 1622815600.7852323-CDS-P-fluviatile_contig14:628576..628897 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 628577..628897 - |
| 1693562388.191282-CDS-P-fluviatile_contig14:628576..628897 | 1693562388.191282-CDS-P-fluviatile_contig14:628576..628897 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 628577..628897 - |
| 1622815600.7966468-CDS-P-fluviatile_contig14:629735..629879 | 1622815600.7966468-CDS-P-fluviatile_contig14:629735..629879 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 629736..629879 - |
| 1693562388.199481-CDS-P-fluviatile_contig14:629735..629879 | 1693562388.199481-CDS-P-fluviatile_contig14:629735..629879 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 629736..629879 - |
| 1622815600.8098643-CDS-P-fluviatile_contig14:630263..630323 | 1622815600.8098643-CDS-P-fluviatile_contig14:630263..630323 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 630264..630323 - |
| 1693562388.2076826-CDS-P-fluviatile_contig14:630263..630323 | 1693562388.2076826-CDS-P-fluviatile_contig14:630263..630323 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 630264..630323 - |
| 1622815600.82377-CDS-P-fluviatile_contig14:631533..631641 | 1622815600.82377-CDS-P-fluviatile_contig14:631533..631641 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 631534..631641 - |
| 1693562388.2157753-CDS-P-fluviatile_contig14:631533..631641 | 1693562388.2157753-CDS-P-fluviatile_contig14:631533..631641 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 631534..631641 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig14.2063.1 >prot_P-fluviatile_contig14.2063.1 ID=prot_P-fluviatile_contig14.2063.1|Name=mRNA_P-fluviatile_contig14.2063.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=211bp
MLYPALAFGALQNITEPCLQAVMATFVEADRQGGLQGAVMSLRVIGEGFA APLFNQAFSAGSSAGFEEAPFLLATIFSLAGLAVRKGSITLSEIAWGRRA RYRKVAWLPLRRLDKRKSHLPRRGSVTTPTTVGYQAAADGTRGIAEERAA ARATNENGGGGGCEGSDGNEAKTSVTVPKAATASAVGGGDSDGEGDDVMS ANSSCPSGRG* back to topmRNA from alignment at P-fluviatile_contig14:627928..632958- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig14.2063.1 ID=mRNA_P-fluviatile_contig14.2063.1|Name=mRNA_P-fluviatile_contig14.2063.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5031bp|location=Sequence derived from alignment at P-fluviatile_contig14:627928..632958- (Porterinema fluviatile SAG_2381) GGCGCGGGGCTGGGAGGAAGGTGGTACGGGGGCGGGGGTGGGTAGTCCAG
ACTCCGACGTTAAGGGTGATCCGCGTGGCAGCAGTGCCAGCAACAACAAC
AACAACAGTTGCGGTGGCGGCAGCGAAACGCCCTCGGCGAACGATGTTGG
CTGCTTCGAGGAAGACAGCGGGGGAAGCAGCGGGAGACGCAGTGCGACGA
CGGGGGCAACGTCAAAGCCGCTGAACCCTTTGTCCGTCCTCAAGGTGTTC
TTGGAGAGCAGGTGCGCGGGCTGCCGTGAGATGATTCGCCGTCCGCCGCA
CCCTGCCGTGTCTCTTAGTGCGTTGCCTCGGCTTGCTGTTCGAGTCGTGG
GTTCAGCCTTCGCTTTGCTCGTGGTGCTACCGTTCTGGTCGCTGCGTCGT
TTGAATCACCGCCGGTGATAACGGGTTTGATGCCGTCGGCCGACTCTCGC
GCGCTCGCGTTGCACATAGCGGGCGATGCCGATCTCGCTTCCTTGGCATT
TTTCATGTCTGACACGCGCCTCCTTCCTTTTCCCTTTCTCTGCTCCCTTC
GGCTCGACGATAATGGTACATGCGCGCGATTGCGGGGGGGTGGTTCCACA
AACCTACACAACCACAACGACCAATCCAGGGTGATGCTGCGGTGCGCGTG
CAGCTACTTCTTGTTCGTGCTTTCGCTCAACGTGTTCGCCTCCGGCTACA
ACTACGTCGACTACCGCTTCCACTGGACGCCGCCGGAGATCTCCTACTTC
TTTGCGACTTACAACATCTGCATGGCCCTCGCCGGAGGCTGGGCTATCCG
CGGCATCGTGCCCGAGCGGCTCTCGGAGGAGAACGGAGCACTCTTCGGGA
TATCCGTCCAGGTTGTTTTCGGTCATTTTTTTTTCACGATTGCGCTTGGA
TTTCCGATATGATGGTTGCAGAAGTTGTTGTAGAATGAGTGGTAGAAATA
GTAGTAGCATTTTAGATGTTGTCGTTGTCCGTCGTCGTCGATTTCGTCGC
TGCTGGCACGACTATCGTTCTTGTCTGTCGTTGTAGTGGTGGTGATGGTG
GTTGTGTGCAGTGTTGACAAAATAACGACTTGTTTGTCATATTCGATTCA
GAGTTCTCAGTTCTCTTTCGTTCTGGCTCAGCCAAAAAATCACATAATGT
GTATCCATCGAAAAGAAGACCACACGTATTGACGCCCTGACTCTCCTTTT
TTTATTCCCGTGAATCCTGTAAAATCTTCGCAACCCGCTTCCTTTCCTAC
TTCACGTCTTCGCGCGTCGCACAAGGTGTTTGCCGTCACGGTGTCCGGCT
TGTGCTTCCGCGGGTGGATGCTGTACCCCGCGCTAGCGTTCGGGGCGCTG
CAAAACATCACGGAGCCTTGCCTCCAGGCGGTGATGGCCACTTTCGTCGA
AGCTGATCGACAAGGCGGACTGCAGGTTTGTAATTTCCGCCCAACACACA
CTTCCTCGCATGCAATGGCGTTCAACGGTGGAACAGACTTTCATATTGGG
CGTTTGTTTTATCTAATGGGTTGGTCGGCTGGCTGGCTGTTGTTGTCTTC
GTAATCTTCTGTTTTTGTTGCTGGACGAGGTACGCTCCGTGCGTGCGCGC
GTTCGTGCTTGCTTTGTTTTAAGCGCCCGCGGCAGCGATACGCCAGCCGG
CTGGTTGACCGGTACACAGGCGCCGATGTCAGTGAGCGGCGGGCTTCACG
AAGATTTTGTTCGTCCGTGCGTGCGCTTCCCTCGAACTGTTCGGTCGTTC
GCTGAAAAAAGTACGGAAAGGAGCACTAGCGCCGCCACCAACGTCGCTAC
CGGAAGAGAGCCGCGAGTACTTGGCCAATCTGGCTTTACCTGCTTTCCAG
GCATATCCCTCTTCCGTTTATCAGGTCATGGAAGTGTGAGCAGTCTCGAA
GGGACTCGCCTATGTAAGTCGAATGGTCGTGATGAAAATGCTACGCCACC
AGCGGGCGTTGGATGCTCCACTCCGGAGTGATAGCTTTTTCGGTGCTTCA
CATGTCTTAATATCACGCGACATGGTGTTTCGGAAATTGTGGAGTGTTGC
TCGATAACATACGCAAGATTTCACGGACAATAATGCACAAGCGAACCCGA
TGAATTAACCCTAACCCTAACCCTAACCCTAACTCTAATCACCAATCCAT
CTCTCATCGTTGATTTCTTCCATGCGCGGTTGATTCCGACTGCTTGTTTG
GACCCAAATACATGCATTTTGTTTCTTGCCCCCTCCCCTTACAAGAGAGT
CTTGTAAAACGCTCGCTCGTTTGGACGAACGGTTTCGTGGTCTAGCACAG
AATGAGGACAGATCAGTTTTGTGATTTTCGCCTCTTCCGACGTCCACTCG
TCGGAGTTCGTTCTCTTGCCATGCCTTGGCGCGATCTCCGGAGGCGGAAA
ATACGCCGATCTTAGCTGGGGATTTTTCAATTGTTTTCGTCGTCTTTCTG
CCTAGTCAATCAACCGATCGCATGCGGTATTTTCTGGGAAGAACGTGTAC
GATGTTCCTTGATCAACTGCACTGCTGCGCTCGTCTTGCGAAGTGTGTTT
ACTTCCGACCTCCGCGCCCCTCTTCCTGTTCGCCACCGACCGACGAAAAC
CCTGCCAACCTTTCTTTCCTGAAATGATACGAAAGGGAGCCGTGATGAGT
CTGCGGGTAATCGGCGAGGGATTTGCGGCTCCCTTGTTCAATCAGGTACA
AGGAGGCATCAGGTCTCTACAACGGCATGGTGGTTGTGCGTCCACGCATT
CTCTCTTGTGCACCCGCATCGTTTTTCTTCTTTATTCCGCGCATTGTTGT
TTGTGTGTTGCGAATTGCGCCTTGCTAGCGTTCTGTTTGTACCTTATAAG
TGGCTCCCCTGCGCCCTCTTAACAATGTCGAACCCCCCTCAAAACTAAAA
AACGCCCGACCCTCAAGAACGGTTTAAAGTATGGCGGCTTTTGGGAACGT
GATGTCTGTATTTTTTGCCCGTGCTGCATGCGCGGTGCCCTGTTCTGCCG
CATGTCACAAAGCCCACAAGTCGGCCCTGTGGGACACCGATGACATCAAA
TCATTTGTGACTATCGAAACGTTTTCTAGGCGTTCTCGGCCGGTTCTTCT
GCGGGCTTCGAGGAGGCCCCCTTCTTGCTCGCGACAATCTTCAGCCTCGC
TGGCTTGGCGGTGAGGAAGGGATCAATCACCCTTTCAGAGATCGCGTGGG
GGCGCAGAGCGAGATACAGGAAGGCGCGAGAACGAATGGAGTGAAGGGGT
AATTTGATAAAGTGCATTTTTGTTCCATCATACGCATCATTTTTCTTGCA
CCCCTCTGGGCGTCCACCTGTTCGTTGAAGTCTTCCCGGTGTGCATTATG
GGGCTCGACGGAGGTGCCGTGAGGCACGGCCGGCGTTTTTGGTCACGTGC
AGTCGTGGAATGAAGGAAGAAAAAAGATGCTCCTGGTAGCACACAGAGCC
CATCACCTTTCGCCTTATACCCATTAGTTCTTGCGTGCCTGCAGCACTGG
GCTCCGCATTCCAGCCGACGGTGCTGGATGACACCACCATACTTGTCATC
GGTTGAGGTTGTACCATGTGCAGCAGCAGCAGCAGAAGGAGGAGGAGAAG
AAGCGACTATTCTGCTGACCAAGCGAAGCGGACTTCATCTGTTTTTGGCG
TGGATTGAACCGCGTGGGCGAAGAATCTCTCTCGCTCTTTCTCTGTCTCC
CTTTGTCTCTCTCTCGCTTTCTATCTCAATGTGTCCGACTTTCATAATAA
CAAAAATGAACGACTTTCTACGATCCACATGGATCGGACGAAACCCTGCA
GACGGCGAAGAAGCGACGCCTAGGATCTCCACTCGAGGCCACTGTCTCAT
AGAGCTCAAGGCGGTGATACGAATGCATGCGCTCCGGTCGAGGTCCGCGC
ACGCCGGAAGCACAAGAATTTTCGCATAGTGCACATCTGCCTGCGAGAAT
GCGGCGTGCAAATGCAGTCGCAGCTGCAGTGGAAGCAGTGTATTTTGCCG
CTGATTGCACTATCTTTATGCCGCTGCACCCGCCCTCTACACCGTGCACA
ATGTTCCATAGGTGGCATGGCTGCCGTTGCGCAGGCTGGACAAGAGGAAA
AGCCACTTGCCTCGCCGAGGCTCCGTGACGACCCCTACAACAGTGGGGTA
CCAAGCGGCAGCGGACGGGACGCGAGGAATAGCCGAAGAGCGTGCGGCAG
CTCGTGCCACCAATGAGAATGGTGGGGGAGGAGGTTGCGAGGGCAGCGAT
GGCAACGAGGCCAAAACTAGCGTAACGGTACCGAAGGCGGCGACAGCGTC
GGCGGTGGGTGGCGGCGATAGCGACGGTGAAGGCGATGATGTGATGTCCG
CGAATAGCAGCTGCCCGTCCGGACGCGGGTAGGCAGGAGATCTGCAGCAG
GGGGCGGAGGAGGACGAGGAGGGGACGGGGAGGGCGAGGGGAACGCAGGT
GGGTGATGCAAGCCGGAGCGAGGGGGCGGAAGGGAGCTGATTGAGGCAAC
TGTAGCACGGGCGTCGCGACCGCTCTCCGACAGCGTGGGGTTGGGCTTTT
TTCATTTTGGGTGTAAAGATGGGTCCGAACCACTCCGAGTCTTGCAGGGC
GTGGAGTGCAGCAGGTCGAAAGTTGGACAGAGATGTGCGCCATAGAAGTG
CCGTGCGAGACTCGAAGTTGCCGGGAATGGCGGACGCGCAGGCGGGCGTC
CGAGGTAATCGTTCGTTGTCGCGGGTGCCCTGTGTCTCAAGGCCATCGTT
TGAACCACTGCAACAATGTTCCTGGCCTCTTTTTCTGTCCTCCTCCTCTT
TTTCTGATTTCGATTTGTTTCTTTTTTAAGACTTGCCAGGGAGACGAGGC
ACGACCTCGTTCGCCTTTATAGATGCAGCAGGGAGTATTTCGTGGCGTGT
GCTGAACCGCTACACAGGGAAGACTTTTGTCAACTCGAAGCGGCAGCGAA
TATCAACAACTTGTGGGCTGTTTCTACCGTACAGCGACCGGGACGATCTC
AGGGAGGCACACGACCCGACAACAGACGAAC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig14:627928..632958- >mRNA_P-fluviatile_contig14.2063.1 ID=mRNA_P-fluviatile_contig14.2063.1|Name=mRNA_P-fluviatile_contig14.2063.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1266bp|location=Sequence derived from alignment at P-fluviatile_contig14:627928..632958- (Porterinema fluviatile SAG_2381) ATGCTGTACCCCGCGCTAGCGTTCGGGGCGCTGCAAAACATCACGGAGCC TTGCCTCCAGGCGGTGATGGCCACTTTCGTCGAAGCTGATCGACAAGGCG GACTGCAGATGCTGTACCCCGCGCTAGCGTTCGGGGCGCTGCAAAACATC ACGGAGCCTTGCCTCCAGGCGGTGATGGCCACTTTCGTCGAAGCTGATCG ACAAGGCGGACTGCAGGGAGCCGTGATGAGTCTGCGGGTAATCGGCGAGG GATTTGCGGCTCCCTTGTTCAATCAGGGAGCCGTGATGAGTCTGCGGGTA ATCGGCGAGGGATTTGCGGCTCCCTTGTTCAATCAGGCGTTCTCGGCCGG TTCTTCTGCGGGCTTCGAGGAGGCCCCCTTCTTGCTCGCGACAATCTTCA GCCTCGCTGGCTTGGCGGTGAGGAAGGGATCAATCACCCTTTCAGAGATC GCGTGGGGGCGCAGAGCGAGATACAGGAAGGCGTTCTCGGCCGGTTCTTC TGCGGGCTTCGAGGAGGCCCCCTTCTTGCTCGCGACAATCTTCAGCCTCG CTGGCTTGGCGGTGAGGAAGGGATCAATCACCCTTTCAGAGATCGCGTGG GGGCGCAGAGCGAGATACAGGAAGGTGGCATGGCTGCCGTTGCGCAGGCT GGACAAGAGGAAAAGCCACTTGCCTCGCCGAGGCTCCGTGACGACCCCTA CAACAGTGGGGTACCAAGCGGCAGCGGACGGGACGCGAGGAATAGCCGAA GAGCGTGCGGCAGCTCGTGCCACCAATGAGAATGGTGGGGGAGGAGGTTG CGAGGGCAGCGATGGCAACGAGGCCAAAACTAGCGTAACGGTACCGAAGG CGGCGACAGCGTCGGCGGTGGGTGGCGGCGATAGCGACGGTGAAGGCGAT GATGTGATGTCCGCGAATAGCAGCTGCCCGTCCGGACGCGGGTAGGTGGC ATGGCTGCCGTTGCGCAGGCTGGACAAGAGGAAAAGCCACTTGCCTCGCC GAGGCTCCGTGACGACCCCTACAACAGTGGGGTACCAAGCGGCAGCGGAC GGGACGCGAGGAATAGCCGAAGAGCGTGCGGCAGCTCGTGCCACCAATGA GAATGGTGGGGGAGGAGGTTGCGAGGGCAGCGATGGCAACGAGGCCAAAA CTAGCGTAACGGTACCGAAGGCGGCGACAGCGTCGGCGGTGGGTGGCGGC GATAGCGACGGTGAAGGCGATGATGTGATGTCCGCGAATAGCAGCTGCCC GTCCGGACGCGGGTAG back to top
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