mRNA_P-fluviatile_contig14.2060.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2060.1
Unique NamemRNA_P-fluviatile_contig14.2060.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:589031..589504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2060.1prot_P-fluviatile_contig14.2060.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 589128..589436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.6023033-UTR-P-fluviatile_contig14:589030..5891271622815590.6023033-UTR-P-fluviatile_contig14:589030..589127Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 589031..589127 +
1693562367.870611-UTR-P-fluviatile_contig14:589030..5891271693562367.870611-UTR-P-fluviatile_contig14:589030..589127Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 589031..589127 +
1622815590.6237388-UTR-P-fluviatile_contig14:589436..5895041622815590.6237388-UTR-P-fluviatile_contig14:589436..589504Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 589437..589504 +
1693562367.8885994-UTR-P-fluviatile_contig14:589436..5895041693562367.8885994-UTR-P-fluviatile_contig14:589436..589504Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 589437..589504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.6146338-CDS-P-fluviatile_contig14:589127..5894361622815590.6146338-CDS-P-fluviatile_contig14:589127..589436Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 589128..589436 +
1693562367.8794541-CDS-P-fluviatile_contig14:589127..5894361693562367.8794541-CDS-P-fluviatile_contig14:589127..589436Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 589128..589436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2060.1

>prot_P-fluviatile_contig14.2060.1 ID=prot_P-fluviatile_contig14.2060.1|Name=mRNA_P-fluviatile_contig14.2060.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
MLPPRYIAAAHSDGQFRCPKWQVRDGRNFAREAGRKRKEKAWGPVAPQKT
RARGSEDSETLGMASDLRRLGGKRPGLRMAQARMRVSSLEGGREGLLPET
HS*
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mRNA from alignment at P-fluviatile_contig14:589031..589504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2060.1 ID=mRNA_P-fluviatile_contig14.2060.1|Name=mRNA_P-fluviatile_contig14.2060.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=474bp|location=Sequence derived from alignment at P-fluviatile_contig14:589031..589504+ (Porterinema fluviatile SAG_2381)
CCGCGATTTAAGATGGCACGCGCTACGATTTTACGATTTCGCGGCTCCGA
CGGGGCTGTATCGCAAATTTTCATTGGTCAGCCGGTCAGTGCGGTCGATG
CTACCACCGAGATATATAGCAGCAGCTCACAGCGACGGGCAATTTAGGTG
TCCCAAGTGGCAGGTGCGGGATGGGCGAAACTTCGCGCGCGAAGCGGGCC
GCAAGCGAAAAGAAAAAGCTTGGGGACCAGTTGCACCGCAGAAGACAAGA
GCTCGAGGGAGTGAAGATTCTGAAACACTTGGCATGGCGTCAGACCTACG
CCGGTTGGGTGGCAAACGGCCTGGGTTGCGGATGGCACAAGCACGTATGC
GTGTTTCAAGCTTGGAGGGTGGTAGGGAAGGGCTCCTTCCTGAGACTCAC
TCGTAGATGACGGACAACACCGTGAAGCCCCAAACCAAAGCTTTTTCGTC
CACCAACGGGCCCCCCACTCCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:589031..589504+

>mRNA_P-fluviatile_contig14.2060.1 ID=mRNA_P-fluviatile_contig14.2060.1|Name=mRNA_P-fluviatile_contig14.2060.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig14:589031..589504+ (Porterinema fluviatile SAG_2381)
ATGCTACCACCGAGATATATAGCAGCAGCTCACAGCGACGGGCAATTTAG
GTGTCCCAAGTGGCAGGTGCGGGATGGGCGAAACTTCGCGCGCGAAGCGG
GCCGCAAGCGAAAAGAAAAAGCTTGGGGACCAGTTGCACCGCAGAAGACA
AGAGCTCGAGGGAGTGAAGATTCTGAAACACTTGGCATGGCGTCAGACCT
ACGCCGGTTGGGTGGCAAACGGCCTGGGTTGCGGATGGCACAAGCACGTA
TGCGTGTTTCAAGCTTGGAGGGTGGTAGGGAAGGGCTCCTTCCTGAGACT
CACTCGTAGATGCTACCACCGAGATATATAGCAGCAGCTCACAGCGACGG
GCAATTTAGGTGTCCCAAGTGGCAGGTGCGGGATGGGCGAAACTTCGCGC
GCGAAGCGGGCCGCAAGCGAAAAGAAAAAGCTTGGGGACCAGTTGCACCG
CAGAAGACAAGAGCTCGAGGGAGTGAAGATTCTGAAACACTTGGCATGGC
GTCAGACCTACGCCGGTTGGGTGGCAAACGGCCTGGGTTGCGGATGGCAC
AAGCACGTATGCGTGTTTCAAGCTTGGAGGGTGGTAGGGAAGGGCTCCTT
CCTGAGACTCACTCGTAG
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