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Homology
BLAST of mRNA_P-fluviatile_contig14.2028.1 vs. uniprot
Match: D7FQ74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74_ECTSI) HSP 1 Score: 228 bits (581), Expect = 2.290e-66 Identity = 141/254 (55.51%), Postives = 154/254 (60.63%), Query Frame = 3
Query: 447 MKRAIALILGVILHAASAFCVTTSGYSCNRAAAPGPGDAKQMAVGTTGDLGASTRLSAATGFFESIVGVLKADKNTKSAETARLSAELLRMLSADGGKPDDVAVMEKIEELEAAPGVYFNKDYLYDGPWRVLWKTNTAWQRYFDPLNGVADNRAYQWYKEDGSVTNIAQALGDKLYVTVDGQGTPASRSTDLPYEVNVEVSRGWLHALGAKIPLDFIKGKGTTFVVYNDAKLRIFRSDTGGVVVQTKADEVVPL 1208
M L LG LHA +AF VT++G A G AK A+ T+ + S TGFFES+ G K + S ETARLS EL L+A+G KPDDVAVMEKIEELE DGSVTNIAQALGDKLYVTVDGQG+PAS TDLPYEVNVEVSR WLHALG KIPLDFIKGKGTTFVVYNDA+LRIFRSDTGGVVVQTKADEVVP+
Sbjct: 1 MNALAVLTLG--LHATAAF-VTSAGPHSRSTTAAGVHSAK-AAISTSRADASRILASTGTGFFESLFGGQKTKEQNNSGETARLSEELFDFLTAEGAKPDDVAVMEKIEELE------------------------------------------------DGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV 202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_007180.1 |
| Exons | 6 |
| Model size | 2345 |
| Cds size | 765 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815595.8713264-UTR-P-fluviatile_contig14:305277..305723 | 1622815595.8713264-UTR-P-fluviatile_contig14:305277..305723 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 305278..305723 + |
| 1693562378.320683-UTR-P-fluviatile_contig14:305277..305723 | 1693562378.320683-UTR-P-fluviatile_contig14:305277..305723 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 305278..305723 + |
| 1622815595.9671535-UTR-P-fluviatile_contig14:309573..310707 | 1622815595.9671535-UTR-P-fluviatile_contig14:309573..310707 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 309574..310707 + |
| 1693562378.3800352-UTR-P-fluviatile_contig14:309573..310707 | 1693562378.3800352-UTR-P-fluviatile_contig14:309573..310707 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig14 309574..310707 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815595.8881466-CDS-P-fluviatile_contig14:305723..305936 | 1622815595.8881466-CDS-P-fluviatile_contig14:305723..305936 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 305724..305936 + |
| 1693562378.329694-CDS-P-fluviatile_contig14:305723..305936 | 1693562378.329694-CDS-P-fluviatile_contig14:305723..305936 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 305724..305936 + |
| 1622815595.9028795-CDS-P-fluviatile_contig14:306547..306670 | 1622815595.9028795-CDS-P-fluviatile_contig14:306547..306670 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 306548..306670 + |
| 1693562378.3393717-CDS-P-fluviatile_contig14:306547..306670 | 1693562378.3393717-CDS-P-fluviatile_contig14:306547..306670 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 306548..306670 + |
| 1622815595.9163156-CDS-P-fluviatile_contig14:307063..307207 | 1622815595.9163156-CDS-P-fluviatile_contig14:307063..307207 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 307064..307207 + |
| 1693562378.3480399-CDS-P-fluviatile_contig14:307063..307207 | 1693562378.3480399-CDS-P-fluviatile_contig14:307063..307207 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 307064..307207 + |
| 1622815595.9341385-CDS-P-fluviatile_contig14:307596..307701 | 1622815595.9341385-CDS-P-fluviatile_contig14:307596..307701 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 307597..307701 + |
| 1693562378.3556373-CDS-P-fluviatile_contig14:307596..307701 | 1693562378.3556373-CDS-P-fluviatile_contig14:307596..307701 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 307597..307701 + |
| 1622815595.9463027-CDS-P-fluviatile_contig14:308629..308698 | 1622815595.9463027-CDS-P-fluviatile_contig14:308629..308698 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 308630..308698 + |
| 1693562378.3632643-CDS-P-fluviatile_contig14:308629..308698 | 1693562378.3632643-CDS-P-fluviatile_contig14:308629..308698 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 308630..308698 + |
| 1622815595.9569073-CDS-P-fluviatile_contig14:309462..309573 | 1622815595.9569073-CDS-P-fluviatile_contig14:309462..309573 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 309463..309573 + |
| 1693562378.3713973-CDS-P-fluviatile_contig14:309462..309573 | 1693562378.3713973-CDS-P-fluviatile_contig14:309462..309573 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig14 309463..309573 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig14.2028.1 >prot_P-fluviatile_contig14.2028.1 ID=prot_P-fluviatile_contig14.2028.1|Name=mRNA_P-fluviatile_contig14.2028.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=255bp
MKRAIALILGVILHAASAFCVTTSGYSCNRAAAPGPGDAKQMAVGTTGDL GASTRLSAATGFFESIVGVLKADKNTKSAETARLSAELLRMLSADGGKPD DVAVMEKIEELEAAPGVYFNKDYLYDGPWRVLWKTNTAWQRYFDPLNGVA DNRAYQWYKEDGSVTNIAQALGDKLYVTVDGQGTPASRSTDLPYEVNVEV SRGWLHALGAKIPLDFIKGKGTTFVVYNDAKLRIFRSDTGGVVVQTKADE VVPL* back to topmRNA from alignment at P-fluviatile_contig14:305278..310707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig14.2028.1 ID=mRNA_P-fluviatile_contig14.2028.1|Name=mRNA_P-fluviatile_contig14.2028.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5430bp|location=Sequence derived from alignment at P-fluviatile_contig14:305278..310707+ (Porterinema fluviatile SAG_2381) AGCAGCCACGCCCGGCTAGTCGCCCCCAAAAATCCGACCAAGAAGGCGAC
CACTCACGAGGAACCTTGGATTGGACTGGTAGGTACACCGTGAAACCACG
TGCTTCTGTGGGTTTACGTTGTCATGAATACACATCATGTGTCGCATGCA
GAAAATAGTAACCATTGCAGCATCGCAGCCTCTGCCGACCACTTTTACAG
GTCATTTGGACGCATAAGAACATGCAGTACTGTGTTTCAACGCTCTGAAT
CCAATTCAAAACATATTTGGTGGAGTTTTAGATTTCGGCGTGATGTGTGT
TGCGTGTGGCGCAAGCCTCGTCATGTTCCGTTTCGCTCTCTCTCCCACCA
CGCCTCTCTGTGTCTGCCGCACATCTGTTTCGCTGGCCAACCTTGGCTGG
ATTCAGGACGTATCACCAACCACCTCTACGAAAATAGCTGGCTGCGATGA
AGAGGGCCATTGCTCTTATCCTGGGGGTTATTCTACACGCCGCAAGCGCT
TTTTGTGTCACTACCAGCGGTTACTCGTGCAACAGAGCCGCTGCACCAGG
TCCTGGCGACGCGAAGCAGATGGCGGTTGGAACAACCGGCGATCTGGGGG
CTAGCACAAGGCTGTCCGCCGCCACGGGATTTTTCGAATCCATCGTCGGG
GTGTTAAAGGTGAGCCTCTCCGAATTGCGTATTCGCCAGAGGTGCCACTC
ATCACTTCCCATGTAAAGGCGGATTCGTACTCTAGAGAAATGGCATGTTT
TAACCTCTGGACCCTAGACCGAACAACAAATGGAGTGTACTGTACTCCCG
CTTGGAGCACACCTTCTTGCCGAGAGATTTACGGGAATTGCAACCACTCC
CCCAAAATGACGTGGTTGCGTACTGAACGGGTGCTTTCGCATGGTGCCAA
CATGTAAACATGGTATTGGCCACAGCGGTAGACGATGTAAGCGATGCTGA
TTCCCAGTTCCATAAGGTCTATCCATGAACCCGAAGCTTTGTGGGCAGCA
GCAGAATAATACGGTAGCTCTTTGCACATGATGATTTTCTGGACTTGCTA
GGTAGCTGGGGTTTGAGAGTCCTCTACTCGTGCCACCTACGAAATGAAAG
CCATCTCCCCTCCCGGTGAATGAAGGAGCGAAAACAAGCAGCACCATTCT
GACACTGCCCATAGCAGGCAAAATTTTGTCTGCCCTGCACGGATCCTCCT
CGTATCGATCGATGTATTTCCCGTTCGATCTGTCCCGTGTTGACCGGGAA
CCGATCTATCGCTCTGGCAGGCAGACAAAAATACCAAGTCCGCGGAAACG
GCTCGACTGAGCGCGGAGCTTTTAAGGATGCTGAGCGCCGACGGCGGAAA
GCCTGACGACGTGGCTGTGATGGAAAAGATCGAGGAGCTGGAGGTACATG
CGGCGCTCCGCTGCAGTACGATAGCTTAGAGGGGTGCCTGTAGTCATGTT
TTTTCGCAGAGATTCCGTGTTGCGTTCTTGTTCCCTTTTGGGGGGGCAAG
GGGAGGATTGATGAGGTTGTCACTCGCACAGGCCCCGCTTGGAGTTTGGC
TGAGTGGTGACTTTCCACACCCGATGGTGTGTAAATCGTTTTTTTCAAGA
AACATTGGCACGTGTTCTAAACGTCAGACGTGAACGGGACGCTGGTCTGT
CGGAGCAACGCTGAGCCGCGTTGTAGGTGATACTGGTCGTTCAGCTTGTG
GGACACAACGATTTTCGACGAACGTTGACGAGTGTCGTCGCCTGCCACCT
GAAACCCTAACATGTGAATCACGATGCGTCGAGCAGGCGGCGCCCGGAGT
TTACTTCAACAAGGATTACTTGTACGACGGCCCTTGGCGGGTACTCTGGA
AGACGAATACCGCATGGCAGCGATATTTTGACCCGCTCAACGGCGTGGCT
GACAACCGGGCCTACCAGTGGTACAAGGAGGTAGGGGCGTGCAGTCCACA
AAAGTACTGAGTGGGTTTCCTCGCGTACTTGCTAGCAAGCCTACTGGCCG
ACTTGCAAGATCGCCACGAGGGTTATCCGGTGACTTAACACCTAGCCTGT
GCTCTTCTTCCGGTCCGGTCTAATGTTGCTACCGCAGTGTGCTGCACATT
CAAGATGAGCTGCTGGACTCGACTTTCTCGTCCAGCACCTCGCGGTATCT
CTTCGAAAGGAAGGATTGTCGTGCTCGTCTGCATTCGTGGATGAAAACAT
GTTGTGCCGTTTTCCTCATGAGCTGTCGGGACCTGACCTGAGCGATGCCG
CCCTTCCTCCGCACCTCCCTCCCTGAATTGACCCCTTCCTTCGACTTTCG
TGGCCGTGATCATACCCAGGATGGTTCGGTGACCAACATTGCTCAGGCTC
TGGGAGATAAGTTGTACGTCACCGTGGACGGGCAAGGCACTCCAGCTTCG
AGGAGCACAGACCTTCCGTATGAGGTGAATCTGATTGGCTTTAGACCCGT
GTCTGACGCAGGATTTAACATGAGAACGAAAGGTGTATCAGCACACCTTG
TTACGTGCCGACAGTTTGTGGGTCACCGTTATGCCTTTCCTGTGCGGCCA
AGATCTTGCATGTCGTACGGCTCGCATTACACGCTACAAGCCGAGACTGA
GCGCGCCTGGTTTAATCTGGAGGTGGCCGCGACGCGATGCATTGCATGCA
AAATAAGCAGCATCTTCTGTTAAAAGCGTCCTCTGCATCTTGAACGTACG
TCCTGGCGTATGGAGATTCGGTTGATTTTTCGTTATTCTCATTCGCGGTG
CAGCCGTGAGTGGATGCCCGGCTTCGTGGGTGCTCGATTGCGCAGAGTTG
AAGTGTCCTTCACCCCGCCCTATATACTTCGAAGTATGATGTAGCTCGAC
CACCTTTCATGGTGACGACAAGGTAGACAATGAGATATGGTGGCCTAGCT
TGAATTTAGCCACGCGCAGCGAAGTTGTAGGTCGCACGATCGTTGCCAAC
CGGCACCCATCTTCATTGCTGTCAGAGGATCACGAGTTGTTGGGCACCGG
GGCGTGTCTTTTGGTGGAGGTCCCTCGATGTAAAGGTCACAAGAAACTCT
ATATTCCACACACACGAGAAGTCTCCGTTGAGTCTTCTGCCGGCTTCAGA
CACTTTTCGTGGACGAGCGGGAAGATCCTGTTGCGCTTGCCTGACGCCCA
CCACGCTCTTCTCGACCAAGCTTAGGGCGGCATTAAAAGGCGTGCCAACA
AGGCTTGTCTGTTGGGGTTTGCGCTTCACCTCTCGCTCGCGTAACAGCGG
CGCCCAGATTTCTTCCACGTTGTTCGCTTGCTCACTGTTTCAGATTAATG
TTTTCCCCTGCCCTTATTCTGCTGGAACACATTGTGGTGACAATCATCGA
AGGTTAACGTGGAAGTCTCTCGAGGGTGGCTACACGCGTTGGGGGCCAAG
ATCCCGCTCGACTTTATCAAGGTAGATTGTTCGTGTAGCAGGAAGCTGCT
ACCATGTTTTTGTTCGTCTTTTTTTGGAACACATCAGAAACAATAAATCA
ACGAGGCGTAGCTTCCGTTCCAGCTGTGGTCCGTCGTCTCCACGGTAGCG
AAGGAATGATGCAAACAACCCACGTTCGCAGCGCTCGCTTCATGCCCTTT
CCCCCCCCTGCGGGGGTCATTTCCAATCGTATGGCAAATCACATCTGGCT
GCTTGCGTGACGTTGTCTCTTCCCGCCAAGAAACGTCTCTTCCCGACAAC
GAATGAGAAGACACGAATGCCTCTCCGTTCGTCGCCAGAAATACTCGCGC
TTGGCGTCGGTGAACAACACCTAGCCAGCGAGCAACGAGACACAATTGGG
AAAACGTCGCGTCCGCCTGGTCTAGTAGGACATACGCGGTCTGCGTGTCA
ATTCAAGTACAGCTTTGTGCGTCGGTCGTATTCCCAATCCGCGGTTCGGG
CCTTTACGGGTGCCGTTATTTCACATGGATCGTCCTCGACCATCGAGGAT
CGCGTGGATTGCTGCCGCCGGTTGGCGCGGGCCGGCCTTCGACCCGATCA
GCTAGGTGTGCGTGTTTGCCTGCAGTGGACAAACGTTCCGCCTGCCGACC
CCTGCACTTGGCTAGTTCATTGCAGTATGTCCGCGGACTGTTTTTTTCTT
GCTCAAATGTCTTCCTTTGTGGGCAACTGATTGCTTTCGACTATTCCCTT
TTAATCGTTTCTGGTCTGTCTTCTTCCTAAAACAGGGGAAGGGCACTACG
TTCGTGGTGTACAACGACGCCAAATTGAGGATATTCCGGTCCGATACCGG
CGGCGTTGTAGTGCAAACGAAGGCGGACGAGGTTGTCCCCTTATGATCGC
CGACCTCGCCGACTCTCCCTCAAACCGATTGGGAGCGCCTGCCTCGCGCA
TCTGGATATGCCTTCTGAAGCTGATGACGGCGAGACTGGGATTTTTGGTT
ACCCACGTGGCAGGATGCTTGCAATGCATGGGGTTTAGGGGGAGGGCTTC
ATATTTTCGCGGTTGTTCCGCTGTGCACAAACTGGTGGATATGTGCTTGG
GGGATTCGGTGGTGGTGGTCGTTACACATCATTGTTGTAGGCGACGGGTA
TCTCAAGGCATAAGCGGGTGCTTCTGACCCCTTGGTTTTCGAGGAGGGGC
CAATTTCATTTTCTTTCTAGATTTTCCTTTGGTTATGTGAGGAATCAATA
ACGGGCCCCGTGACCGGCAAGCTAGCATTCTTGTGCGCTGGAGTCCCCAT
CAATGTTGGTGCTGTAGTGGACGACGGCGTCCAGAGTTTGAATGGCTTAA
ATGCTTTGTGGTGCCTTCGATGCAAACTACGAAGAGTAGGGAGTCACCCA
AGAGGACACACGCTTCTGACGAGTAGACCCCTTGAGAATGCTAGACAGTA
AGTGGCAAACTTTCTCGGGTCATGAAGGCAGCGGTGAGTCACCAACGACA
GATAGGGGTCCAACCGTGGGGTGCTTTGCAGAGCAAGGACCATTTCACGT
TATGTGAGTGTAGAGGGACTGCACAGAAGAACAATACTTCTGGAATCGGA
GTTCATGCGGAAATCGGCAGTGGTCAGCCCCGCTTTTGCCCATTCCAATC
TTTTGTCGACGAATTTGTCCGAACACCTCTCGCAACTCCGAAAGAAGTTC
GTACCCTGTAGAAGAATTCACGTACGGATGTTGTTTGCGAAGGCCTTCCC
AAAAGACCAGCTTTTGTCGGGTCAAAACCGGATGCGGTTGTACTGGCGCG
AAGCGCGGAAGGATCAATCGAGTCTAAACAACCGAAGAAAATCAGCGTTG
TCTCAAGGCTCAGCAATACGCGAATGCTGTTTCGAGTGCACAATAGTCGT
CCAGGCGGATTCCTAGCGTGCGCTTCTGTCTTCGAGGGCTTGGGACATTT
CACTCCATAGCAGAATGACGTAGCAATTTCGGTTGAGGTTGCGTGTTGGT
ACTTAGCTGTGGGGCCAAACGAAGTCCCCC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig14:305278..310707+ >mRNA_P-fluviatile_contig14.2028.1 ID=mRNA_P-fluviatile_contig14.2028.1|Name=mRNA_P-fluviatile_contig14.2028.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1530bp|location=Sequence derived from alignment at P-fluviatile_contig14:305278..310707+ (Porterinema fluviatile SAG_2381) ATGAAGAGGGCCATTGCTCTTATCCTGGGGGTTATTCTACACGCCGCAAG CGCTTTTTGTGTCACTACCAGCGGTTACTCGTGCAACAGAGCCGCTGCAC CAGGTCCTGGCGACGCGAAGCAGATGGCGGTTGGAACAACCGGCGATCTG GGGGCTAGCACAAGGCTGTCCGCCGCCACGGGATTTTTCGAATCCATCGT CGGGGTGTTAAAGATGAAGAGGGCCATTGCTCTTATCCTGGGGGTTATTC TACACGCCGCAAGCGCTTTTTGTGTCACTACCAGCGGTTACTCGTGCAAC AGAGCCGCTGCACCAGGTCCTGGCGACGCGAAGCAGATGGCGGTTGGAAC AACCGGCGATCTGGGGGCTAGCACAAGGCTGTCCGCCGCCACGGGATTTT TCGAATCCATCGTCGGGGTGTTAAAGGCAGACAAAAATACCAAGTCCGCG GAAACGGCTCGACTGAGCGCGGAGCTTTTAAGGATGCTGAGCGCCGACGG CGGAAAGCCTGACGACGTGGCTGTGATGGAAAAGATCGAGGAGCTGGAGG CAGACAAAAATACCAAGTCCGCGGAAACGGCTCGACTGAGCGCGGAGCTT TTAAGGATGCTGAGCGCCGACGGCGGAAAGCCTGACGACGTGGCTGTGAT GGAAAAGATCGAGGAGCTGGAGGCGGCGCCCGGAGTTTACTTCAACAAGG ATTACTTGTACGACGGCCCTTGGCGGGTACTCTGGAAGACGAATACCGCA TGGCAGCGATATTTTGACCCGCTCAACGGCGTGGCTGACAACCGGGCCTA CCAGTGGTACAAGGAGGCGGCGCCCGGAGTTTACTTCAACAAGGATTACT TGTACGACGGCCCTTGGCGGGTACTCTGGAAGACGAATACCGCATGGCAG CGATATTTTGACCCGCTCAACGGCGTGGCTGACAACCGGGCCTACCAGTG GTACAAGGAGGATGGTTCGGTGACCAACATTGCTCAGGCTCTGGGAGATA AGTTGTACGTCACCGTGGACGGGCAAGGCACTCCAGCTTCGAGGAGCACA GACCTTCCGTATGAGGATGGTTCGGTGACCAACATTGCTCAGGCTCTGGG AGATAAGTTGTACGTCACCGTGGACGGGCAAGGCACTCCAGCTTCGAGGA GCACAGACCTTCCGTATGAGGTTAACGTGGAAGTCTCTCGAGGGTGGCTA CACGCGTTGGGGGCCAAGATCCCGCTCGACTTTATCAAGGTTAACGTGGA AGTCTCTCGAGGGTGGCTACACGCGTTGGGGGCCAAGATCCCGCTCGACT TTATCAAGGGGAAGGGCACTACGTTCGTGGTGTACAACGACGCCAAATTG AGGATATTCCGGTCCGATACCGGCGGCGTTGTAGTGCAAACGAAGGCGGA CGAGGTTGTCCCCTTATGAGGGAAGGGCACTACGTTCGTGGTGTACAACG ACGCCAAATTGAGGATATTCCGGTCCGATACCGGCGGCGTTGTAGTGCAA ACGAAGGCGGACGAGGTTGTCCCCTTATGA back to top
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