mRNA_P-fluviatile_contig14.2022.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2022.1
Unique NamemRNA_P-fluviatile_contig14.2022.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2022.1 vs. uniprot
Match: D7G833_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G833_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 1.000e-115
Identity = 228/434 (52.53%), Postives = 286/434 (65.90%), Query Frame = 1 
Query:    1 QAARFADPVGRCY----AIDEPPAARLGLFTCIADTGFLLRALSEALRFPLVAVVDVGDDSRSRPSRLVGHMLTVNT---GSAFGGRDSGVVPEA-NLQARIKAGDDPLPDSAALVLIDVHEEVLSADAWMDLLRYLVQVLAENGAIVIRGPREEVESAAREGGG-GAGEIGSAWYKSAQVWKAISALACHGKRSVTVAVGGLDGGIIVVRHAAPGEKGLET---GCGRNNTDGGGGGIGKPATAEPAVVAEPPVPLQFEKLFLWVTRERE-TTNKAVEDVQAKFGGADFLRRYARRQRDRWACLSTHNGSMTADLTG--DPSVEVVG-GGGHLRTKRRHDRRLGRGEISSNDVASQ--RAARVCLERHLKMHTEDIRAGFALEMVLRAIGGNEVERQVTRLRAKVINESGPSGALLWSALHARAAGAAAAGFL 1248
            QAARFADP G C       D+P A RLG+FTC+ADT F LRAL+E+LRF  + VVDVG  S       + H L  +    G+A  G +S + PEA  LQA++ AG+DPLPD+A L+LIDVH+EVLSAD W+DL R L++ L+++G IVIRGPRE+V++    G   GAG    AWY S  +W A++ALAC  + +   AVG LDGGIIV+RHAAPGE  LET    CGRN+    GGG+     A+ AV A PP PL+FE+LFLW T   + TT  A+E VQA FGGA+ +R+YARR+ DR  CL+T N   T +     + S+E    GGGHLR + RH R      +  +  A Q   AAR CLE HL+ H +D+RAGFALEMVLRA GG+ V+RQV RLR ++  ESGP+G LLW ALHARAAG AA G L
Sbjct:  101 QAARFADPDGHCLYPSPGADQPTAERLGVFTCLADTPFFLRALAESLRFRFLVVVDVGSVS-------LRHGLPASPPGLGAALTGLESEMFPEAPQLQAQVTAGEDPLPDNADLILIDVHKEVLSADDWVDLFRSLMRALSDDGVIVIRGPREQVDATTGAGRNEGAGSTIRAWYGSGHLWDAVTALACD-QVAAAAAVGNLDGGIIVLRHAAPGEIDLETVKARCGRNHPGQQGGGV-----AKGAVAAAPPHPLRFERLFLWSTAPSDITTATAIEAVQAMFGGANEVRKYARRRYDRSVCLNTLNTVATGEAVAWSEASLETESMGGGHLRAEPRHIRHK---SVPQSGAAPQWHSAARACLETHLEEHPQDVRAGFALEMVLRATGGSGVDRQVDRLRTRMTEESGPAGGLLWRALHARAAGVAATGLL 518
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G833_ECTSI1.000e-11552.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:252688..255301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-00_010600.1
Exons2
Model size2299
Cds size1053
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2022.1prot_P-fluviatile_contig14.2022.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 252889..254256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2339618-UTR-P-fluviatile_contig14:252687..2528881622815595.2339618-UTR-P-fluviatile_contig14:252687..252888Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 252688..252888 +
1693562374.2881253-UTR-P-fluviatile_contig14:252687..2528881693562374.2881253-UTR-P-fluviatile_contig14:252687..252888Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 252688..252888 +
1622815595.2726822-UTR-P-fluviatile_contig14:254256..2553011622815595.2726822-UTR-P-fluviatile_contig14:254256..255301Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 254257..255301 +
1693562374.3138106-UTR-P-fluviatile_contig14:254256..2553011693562374.3138106-UTR-P-fluviatile_contig14:254256..255301Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 254257..255301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2467105-CDS-P-fluviatile_contig14:252888..2529601622815595.2467105-CDS-P-fluviatile_contig14:252888..252960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 252889..252960 +
1693562374.2951589-CDS-P-fluviatile_contig14:252888..2529601693562374.2951589-CDS-P-fluviatile_contig14:252888..252960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 252889..252960 +
1622815595.2610781-CDS-P-fluviatile_contig14:253275..2542561622815595.2610781-CDS-P-fluviatile_contig14:253275..254256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 253276..254256 +
1693562374.3063314-CDS-P-fluviatile_contig14:253275..2542561693562374.3063314-CDS-P-fluviatile_contig14:253275..254256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 253276..254256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2022.1

>prot_P-fluviatile_contig14.2022.1 ID=prot_P-fluviatile_contig14.2022.1|Name=mRNA_P-fluviatile_contig14.2022.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=351bp
MLTVNTGSAFGGRDSGVVPEANLQARIKAGDDPLPDSAALVLIDVHEEVL
SADAWMDLLRYLVQVLAENGAIVIRGPREEVESAAREGGGGAGEIGSAWY
KSAQVWKAISALACHGKRSVTVAVGGLDGGIIVVRHAAPGEKGLETGCGR
NNTDGGGGGIGKPATAEPAVVAEPPVPLQFEKLFLWVTRERETTNKAVED
VQAKFGGADFLRRYARRQRDRWACLSTHNGSMTADLTGDPSVEVVGGGGH
LRTKRRHDRRLGRGEISSNDVASQRAARVCLERHLKMHTEDIRAGFALEM
VLRAIGGNEVERQVTRLRAKVINESGPSGALLWSALHARAAGAAAAGFLR
*
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mRNA from alignment at P-fluviatile_contig14:252688..255301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2022.1 ID=mRNA_P-fluviatile_contig14.2022.1|Name=mRNA_P-fluviatile_contig14.2022.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2614bp|location=Sequence derived from alignment at P-fluviatile_contig14:252688..255301+ (Porterinema fluviatile SAG_2381)
CAGGCTGCTCGATTCGCGGACCCTGTGGGTCGATGCTACGCGATCGACGA
ACCACCAGCGGCAAGGCTCGGCCTGTTTACCTGCATCGCCGACACGGGCT
TCCTCCTGCGCGCCCTAAGCGAAGCGCTTCGTTTCCCGCTGGTGGCAGTC
GTCGACGTCGGCGATGATTCCCGGTCTCGTCCTTCCCGCCTGGTGGGGCA
CATGCTGACGGTGAACACGGGCTCGGCTTTCGGCGGGCGAGACTCGGGAG
TTGTGCCAGAGGCGAATCTGCAGGTACAACCCTCGTCCGTGCAAATGGAT
CGCTGAAGGGCGGCCGGTAATTCACCATTTGTGTTCGCCCTAGAACCTAA
AGTTGTTCGTCTGACATGAGAAACTCGCAGCGATTAAGTTCGAGATGTCC
TCCTGCTATGCGCTCGACAAACCTTGAAGCGAGATGTTTCAGAAGAGTCA
GATTTCAAGGAGCAATGCAGCGCCTTGACAGCGTTGTTGTTCTGTTTGTG
TTACCGGAATTCATATAGAATGAGTTTTCCTGTCCTATTGCGCAATAGGC
CTCACTGCTGTGCCCCTTGTTACCCTCAACGGGCGCAGGCACGAATTAAA
GCCGGGGACGATCCTCTGCCGGATAGCGCTGCGCTGGTCCTGATCGACGT
GCACGAGGAGGTCCTTTCTGCAGATGCTTGGATGGATCTGCTTCGCTATC
TGGTGCAGGTGCTGGCGGAGAATGGGGCGATAGTGATCCGAGGTCCTCGG
GAGGAGGTGGAATCAGCCGCGAGGGAGGGCGGGGGCGGGGCGGGGGAAAT
AGGCAGCGCGTGGTACAAAAGCGCCCAGGTATGGAAAGCGATATCGGCTC
TAGCGTGCCACGGCAAACGTAGCGTGACAGTTGCCGTCGGAGGTTTGGAC
GGCGGCATCATTGTTGTACGTCATGCGGCGCCTGGCGAAAAAGGTTTAGA
GACAGGATGTGGCCGCAACAACACGGATGGAGGGGGGGGGGGCATTGGGA
AGCCCGCGACGGCAGAACCGGCGGTGGTGGCGGAACCGCCCGTTCCACTG
CAGTTCGAAAAGCTGTTCTTGTGGGTAACAAGGGAGCGAGAAACCACGAA
CAAGGCGGTGGAGGATGTACAGGCAAAGTTTGGTGGGGCGGATTTTTTGC
GGAGATATGCTCGAAGGCAACGAGATCGTTGGGCTTGCTTGAGCACACAC
AACGGTAGCATGACTGCGGATTTGACAGGAGATCCTTCGGTGGAAGTCGT
CGGTGGTGGTGGCCATCTCCGCACGAAGAGACGACACGACCGCCGCCTAG
GCCGTGGTGAGATATCTTCGAACGACGTTGCATCCCAACGGGCTGCGCGG
GTGTGCTTGGAGAGGCACTTGAAAATGCACACCGAAGACATTCGAGCTGG
CTTTGCGCTCGAGATGGTGCTCAGGGCGATCGGAGGCAACGAGGTTGAAA
GACAGGTGACGCGCCTTCGAGCGAAGGTTATCAACGAGAGCGGGCCGTCA
GGAGCCTTGCTATGGAGCGCGCTCCACGCACGAGCGGCCGGAGCTGCGGC
AGCGGGGTTCCTCCGTTGAGTCAATTCGCTTAGCGTGCGTTACGAACGGT
GGTTCTTTGTTGACGGCGCTTTGCCTCGTTTTCGTCTTGTGTGCGTCGTG
TTTTACAAAGCATACGGCTGCTTGACAGTGAGCACAGCGGCCACAAGTCC
AAATGAATGCTTCATGTATGCGTAACCTCTCAGATCAAAGCGGCGTCGGT
TCAACCGTCCTCTATACTCTTCTCCCCAAGCTTAGAGCTGGAGACAAACA
CTGCGGGATTTGATATCCGCACACCAACGAGTATCGGGGACGGTGGGTAG
CTCAGTTACTCTGACATCATTGCCGTGCACACCTCACCCCGACGTACGCA
CCACAGTTTGGGTGACGACAGAAATATCGCTGCCATACATTGCATTGTTC
TACATGCGAAGGTTGGATCAGCCGTGCTCGGCGAAGCTGTTCACTCCTCC
GCCGCAGAAAGCAAAGGTTCACGGGCAGACACCCAGGCCCTCGTAGGACA
AAACGCGGCGTGAAGTTCGGACTCGTGTTTGAGCTCACTGGAGGTGCGTG
GCTAAAGTTCTGCAAATTTCAACATTAATTTGACATATGTCTCTTTCCGC
GAACAGGTGAAAACATCTGCTGTGGGAGCAAGCAAAGCAGCCGGTCTTTC
TTCATTTCGAAATTCTTATGGCGGCCCCGAAACTCACTGTTTACGAAAGA
CGTCGCACAGAAGGGGAGAGCAGACCCAACATTCGCTCGATTGGGCGCTT
TTGGTCTAAATTCAGCAGCACTCACGATATTTACCGTCCATCCGCGGTGG
TCGCGACAGCTATTGGTGGGCCAAGCCCGGTTGGGAGTTGAGTCAGCGTG
GATGGCGTCAGACGCGGACAAGTAAAACCACGCAATCTACTTTTTGCCCT
CGATCTGGCCCCGAGCCGAATGCCTCGAGGGCACCGCATCACCCCGGGCG
TGCTCGTTGGCCAACTGCCGTTGCGCTCGGGGGCACGCGACGACTCACAC
ATTACTTCAGGAGTTAGTATTGTTTTGGCTGCAAATTGTTGTGCGCTTCG
AAATATGGACAAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:252688..255301+

>mRNA_P-fluviatile_contig14.2022.1 ID=mRNA_P-fluviatile_contig14.2022.1|Name=mRNA_P-fluviatile_contig14.2022.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2106bp|location=Sequence derived from alignment at P-fluviatile_contig14:252688..255301+ (Porterinema fluviatile SAG_2381)
ATGCTGACGGTGAACACGGGCTCGGCTTTCGGCGGGCGAGACTCGGGAGT
TGTGCCAGAGGCGAATCTGCAGATGCTGACGGTGAACACGGGCTCGGCTT
TCGGCGGGCGAGACTCGGGAGTTGTGCCAGAGGCGAATCTGCAGGCACGA
ATTAAAGCCGGGGACGATCCTCTGCCGGATAGCGCTGCGCTGGTCCTGAT
CGACGTGCACGAGGAGGTCCTTTCTGCAGATGCTTGGATGGATCTGCTTC
GCTATCTGGTGCAGGTGCTGGCGGAGAATGGGGCGATAGTGATCCGAGGT
CCTCGGGAGGAGGTGGAATCAGCCGCGAGGGAGGGCGGGGGCGGGGCGGG
GGAAATAGGCAGCGCGTGGTACAAAAGCGCCCAGGTATGGAAAGCGATAT
CGGCTCTAGCGTGCCACGGCAAACGTAGCGTGACAGTTGCCGTCGGAGGT
TTGGACGGCGGCATCATTGTTGTACGTCATGCGGCGCCTGGCGAAAAAGG
TTTAGAGACAGGATGTGGCCGCAACAACACGGATGGAGGGGGGGGGGGCA
TTGGGAAGCCCGCGACGGCAGAACCGGCGGTGGTGGCGGAACCGCCCGTT
CCACTGCAGTTCGAAAAGCTGTTCTTGTGGGTAACAAGGGAGCGAGAAAC
CACGAACAAGGCGGTGGAGGATGTACAGGCAAAGTTTGGTGGGGCGGATT
TTTTGCGGAGATATGCTCGAAGGCAACGAGATCGTTGGGCTTGCTTGAGC
ACACACAACGGTAGCATGACTGCGGATTTGACAGGAGATCCTTCGGTGGA
AGTCGTCGGTGGTGGTGGCCATCTCCGCACGAAGAGACGACACGACCGCC
GCCTAGGCCGTGGTGAGATATCTTCGAACGACGTTGCATCCCAACGGGCT
GCGCGGGTGTGCTTGGAGAGGCACTTGAAAATGCACACCGAAGACATTCG
AGCTGGCTTTGCGCTCGAGATGGTGCTCAGGGCGATCGGAGGCAACGAGG
TTGAAAGACAGGTGACGCGCCTTCGAGCGAAGGTTATCAACGAGAGCGGG
CCGTCAGGAGCCTTGCTATGGAGCGCGCTCCACGCACGAGCGGCCGGAGC
TGCGGCAGCGGGGTTCCTCCGTTGAGCACGAATTAAAGCCGGGGACGATC
CTCTGCCGGATAGCGCTGCGCTGGTCCTGATCGACGTGCACGAGGAGGTC
CTTTCTGCAGATGCTTGGATGGATCTGCTTCGCTATCTGGTGCAGGTGCT
GGCGGAGAATGGGGCGATAGTGATCCGAGGTCCTCGGGAGGAGGTGGAAT
CAGCCGCGAGGGAGGGCGGGGGCGGGGCGGGGGAAATAGGCAGCGCGTGG
TACAAAAGCGCCCAGGTATGGAAAGCGATATCGGCTCTAGCGTGCCACGG
CAAACGTAGCGTGACAGTTGCCGTCGGAGGTTTGGACGGCGGCATCATTG
TTGTACGTCATGCGGCGCCTGGCGAAAAAGGTTTAGAGACAGGATGTGGC
CGCAACAACACGGATGGAGGGGGGGGGGGCATTGGGAAGCCCGCGACGGC
AGAACCGGCGGTGGTGGCGGAACCGCCCGTTCCACTGCAGTTCGAAAAGC
TGTTCTTGTGGGTAACAAGGGAGCGAGAAACCACGAACAAGGCGGTGGAG
GATGTACAGGCAAAGTTTGGTGGGGCGGATTTTTTGCGGAGATATGCTCG
AAGGCAACGAGATCGTTGGGCTTGCTTGAGCACACACAACGGTAGCATGA
CTGCGGATTTGACAGGAGATCCTTCGGTGGAAGTCGTCGGTGGTGGTGGC
CATCTCCGCACGAAGAGACGACACGACCGCCGCCTAGGCCGTGGTGAGAT
ATCTTCGAACGACGTTGCATCCCAACGGGCTGCGCGGGTGTGCTTGGAGA
GGCACTTGAAAATGCACACCGAAGACATTCGAGCTGGCTTTGCGCTCGAG
ATGGTGCTCAGGGCGATCGGAGGCAACGAGGTTGAAAGACAGGTGACGCG
CCTTCGAGCGAAGGTTATCAACGAGAGCGGGCCGTCAGGAGCCTTGCTAT
GGAGCGCGCTCCACGCACGAGCGGCCGGAGCTGCGGCAGCGGGGTTCCTC
CGTTGA
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