mRNA_P-fluviatile_contig14.2017.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2017.1
Unique NamemRNA_P-fluviatile_contig14.2017.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:221528..222178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size572
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2017.1prot_P-fluviatile_contig14.2017.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 221528..221897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.5811446-CDS-P-fluviatile_contig14:221527..2217431622815588.5811446-CDS-P-fluviatile_contig14:221527..221743Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 221528..221743 -
1693562363.3983738-CDS-P-fluviatile_contig14:221527..2217431693562363.3983738-CDS-P-fluviatile_contig14:221527..221743Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 221528..221743 -
1622815588.6213279-CDS-P-fluviatile_contig14:221822..2218971622815588.6213279-CDS-P-fluviatile_contig14:221822..221897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 221823..221897 -
1693562363.406431-CDS-P-fluviatile_contig14:221822..2218971693562363.406431-CDS-P-fluviatile_contig14:221822..221897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 221823..221897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.6328602-UTR-P-fluviatile_contig14:221897..2221781622815588.6328602-UTR-P-fluviatile_contig14:221897..222178Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 221898..222178 -
1693562363.414064-UTR-P-fluviatile_contig14:221897..2221781693562363.414064-UTR-P-fluviatile_contig14:221897..222178Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 221898..222178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2017.1

>prot_P-fluviatile_contig14.2017.1 ID=prot_P-fluviatile_contig14.2017.1|Name=mRNA_P-fluviatile_contig14.2017.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=97bp
MLSSFLFDSLIAFQSLPLPSPPQRKALFPLPPVEGLRLSRSFVSLLSPQS
SLSQIADLTLILSISLSLSSALSLPPPLTLSPSSPQNHSKRPRSNL*
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mRNA from alignment at P-fluviatile_contig14:221528..222178-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2017.1 ID=mRNA_P-fluviatile_contig14.2017.1|Name=mRNA_P-fluviatile_contig14.2017.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=651bp|location=Sequence derived from alignment at P-fluviatile_contig14:221528..222178- (Porterinema fluviatile SAG_2381)
GTGGAAGGGACGTGGAAGGGACGTGCAAGGGACGTGGAAGTACATAAAAA
CGACAGGACCGGACAGGACCGGACAGGACCGGGAGAAACGAGAAAAGAAA
AGGTATCAAAAGAACAGGGCACAGAGTGGGTCAAAGAAATAACACCCAGC
CGATTTCATCTCAGAGAGATCCTCGAGCGATCGTCCGAAGGATTTCAAAC
TGCGACTGCATTAACTGTGATAAAACCGGCTGGTTCTCTAAACTGTTACC
TTTGGAACGCACACAACTAGGACACGGCAGCATGCTTTCGAGTTTCTTGT
TTGATTCACTTATTGCATTCCAGTCCCTGCCGCTTCCCTCTCCACCCCAA
CGGAAGGTCGGTGTAAACCCCGCCGAATACTAAGAAAGGAAAGCGTAACG
GAAGCAGAAATGTGAGGCAAGGGCGGTTCTGTAAGGCACTTTTTCCTCTT
CCCCCTGTGGAAGGTCTCCGCCTCTCGCGCTCTTTCGTTTCTCTCTTGTC
TCCCCAATCTTCTCTGTCGCAGATCGCCGACCTCACTCTCATTCTTTCGA
TATCTCTCTCCCTGTCGAGCGCTCTCTCTCTCCCCCCCCCCCTCACGCTC
TCTCCATCATCCCCACAAAACCACTCAAAGCGACCAAGGTCTAACCTGTA
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:221528..222178-

>mRNA_P-fluviatile_contig14.2017.1 ID=mRNA_P-fluviatile_contig14.2017.1|Name=mRNA_P-fluviatile_contig14.2017.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=582bp|location=Sequence derived from alignment at P-fluviatile_contig14:221528..222178- (Porterinema fluviatile SAG_2381)
ATGCTTTCGAGTTTCTTGTTTGATTCACTTATTGCATTCCAGTCCCTGCC
GCTTCCCTCTCCACCCCAACGGAAGATGCTTTCGAGTTTCTTGTTTGATT
CACTTATTGCATTCCAGTCCCTGCCGCTTCCCTCTCCACCCCAACGGAAG
GCACTTTTTCCTCTTCCCCCTGTGGAAGGTCTCCGCCTCTCGCGCTCTTT
CGTTTCTCTCTTGTCTCCCCAATCTTCTCTGTCGCAGATCGCCGACCTCA
CTCTCATTCTTTCGATATCTCTCTCCCTGTCGAGCGCTCTCTCTCTCCCC
CCCCCCCTCACGCTCTCTCCATCATCCCCACAAAACCACTCAAAGCGACC
AAGGTCTAACCTGTAGGCACTTTTTCCTCTTCCCCCTGTGGAAGGTCTCC
GCCTCTCGCGCTCTTTCGTTTCTCTCTTGTCTCCCCAATCTTCTCTGTCG
CAGATCGCCGACCTCACTCTCATTCTTTCGATATCTCTCTCCCTGTCGAG
CGCTCTCTCTCTCCCCCCCCCCCTCACGCTCTCTCCATCATCCCCACAAA
ACCACTCAAAGCGACCAAGGTCTAACCTGTAG
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