mRNA_P-fluviatile_contig14.2015.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2015.1
Unique NamemRNA_P-fluviatile_contig14.2015.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:210114..210690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.48734-UTR-P-fluviatile_contig14:210113..2102311622815590.48734-UTR-P-fluviatile_contig14:210113..210231Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 210114..210231 +
1693562367.8194528-UTR-P-fluviatile_contig14:210113..2102311693562367.8194528-UTR-P-fluviatile_contig14:210113..210231Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 210114..210231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.5015442-CDS-P-fluviatile_contig14:210231..2106901622815590.5015442-CDS-P-fluviatile_contig14:210231..210690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 210232..210690 +
1693562367.829708-CDS-P-fluviatile_contig14:210231..2106901693562367.829708-CDS-P-fluviatile_contig14:210231..210690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 210232..210690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2015.1prot_P-fluviatile_contig14.2015.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 210232..210690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2015.1

>prot_P-fluviatile_contig14.2015.1 ID=prot_P-fluviatile_contig14.2015.1|Name=mRNA_P-fluviatile_contig14.2015.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
MSWNTACFAALSLRHKVRQAGYGIHGGVLVVQGTSNTTRSITLLLLPQEV
PMSKHHFFPSHGHEAKEMKRLGLLQSLDGATRPKAQPWHLISCMYCGHYC
IAAQAISGVCWPHPLFHFVHTGAAIPTHLDLRVCRSLRLFKFRHLIGWGW
LVA
back to top

mRNA from alignment at P-fluviatile_contig14:210114..210690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2015.1 ID=mRNA_P-fluviatile_contig14.2015.1|Name=mRNA_P-fluviatile_contig14.2015.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=577bp|location=Sequence derived from alignment at P-fluviatile_contig14:210114..210690+ (Porterinema fluviatile SAG_2381)
GCGGTGGAATGTTGTGGCAGCAGTCGGTGCTTCGAGCTCGCAAGAAGTGC
AAGGTGCAACGGTAGGGGAGAAAAGCGTGTGGGTGGAGATACGACAATGA
GAGCGAGGGATTCCTACAATGAGCTGGAACACTGCCTGTTTCGCAGCACT
CTCTTTGCGACATAAGGTCCGACAGGCGGGGTATGGTATACACGGCGGTG
TGTTGGTGGTTCAGGGTACATCCAATACCACTAGGAGTATTACACTGCTG
CTCCTTCCGCAAGAAGTGCCCATGTCAAAACATCACTTCTTCCCGTCGCA
TGGCCATGAAGCGAAAGAGATGAAGAGGCTAGGGCTCCTGCAAAGCTTGG
ATGGGGCGACGAGGCCAAAAGCCCAGCCCTGGCACCTGATCTCCTGCATG
TACTGTGGCCACTACTGCATCGCTGCACAGGCAATCAGTGGTGTTTGTTG
GCCGCATCCTTTGTTTCATTTTGTTCACACGGGAGCAGCTATTCCTACCC
ACCTCGACCTCCGGGTCTGCCGCAGCCTTCGCCTCTTCAAATTCCGCCAT
CTTATTGGGTGGGGATGGTTGGTAGCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:210114..210690+

>mRNA_P-fluviatile_contig14.2015.1 ID=mRNA_P-fluviatile_contig14.2015.1|Name=mRNA_P-fluviatile_contig14.2015.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig14:210114..210690+ (Porterinema fluviatile SAG_2381)
ATGAGCTGGAACACTGCCTGTTTCGCAGCACTCTCTTTGCGACATAAGGT
CCGACAGGCGGGGTATGGTATACACGGCGGTGTGTTGGTGGTTCAGGGTA
CATCCAATACCACTAGGAGTATTACACTGCTGCTCCTTCCGCAAGAAGTG
CCCATGTCAAAACATCACTTCTTCCCGTCGCATGGCCATGAAGCGAAAGA
GATGAAGAGGCTAGGGCTCCTGCAAAGCTTGGATGGGGCGACGAGGCCAA
AAGCCCAGCCCTGGCACCTGATCTCCTGCATGTACTGTGGCCACTACTGC
ATCGCTGCACAGGCAATCAGTGGTGTTTGTTGGCCGCATCCTTTGTTTCA
TTTTGTTCACACGGGAGCAGCTATTCCTACCCACCTCGACCTCCGGGTCT
GCCGCAGCCTTCGCCTCTTCAAATTCCGCCATCTTATTGGGTGGGGATGG
TTGGTAGCTATGAGCTGGAACACTGCCTGTTTCGCAGCACTCTCTTTGCG
ACATAAGGTCCGACAGGCGGGGTATGGTATACACGGCGGTGTGTTGGTGG
TTCAGGGTACATCCAATACCACTAGGAGTATTACACTGCTGCTCCTTCCG
CAAGAAGTGCCCATGTCAAAACATCACTTCTTCCCGTCGCATGGCCATGA
AGCGAAAGAGATGAAGAGGCTAGGGCTCCTGCAAAGCTTGGATGGGGCGA
CGAGGCCAAAAGCCCAGCCCTGGCACCTGATCTCCTGCATGTACTGTGGC
CACTACTGCATCGCTGCACAGGCAATCAGTGGTGTTTGTTGGCCGCATCC
TTTGTTTCATTTTGTTCACACGGGAGCAGCTATTCCTACCCACCTCGACC
TCCGGGTCTGCCGCAGCCTTCGCCTCTTCAAATTCCGCCATCTTATTGGG
TGGGGATGGTTGGTAGCT
back to top