mRNA_P-fluviatile_contig14.2012.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2012.1
Unique NamemRNA_P-fluviatile_contig14.2012.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.2012.1 vs. uniprot
Match: D7FQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ1_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.770e-41
Identity = 76/109 (69.72%), Postives = 90/109 (82.57%), Query Frame = 1 
Query:  589 MPDLTSRMHEAKS--KASQEVMQRIRQSNVQLGDSRVKIMTTTQNDSMDQVVEATRNMEPGFNARARQDPRHSSITLGDPDTENQWTTSNRMLDWYAPETYTRQATPDF 909
            MPDL SRM EA S  +A++E+M RIR+SNVQLGD R+K +TT+Q+DSMD++VEAT  MEPGFNAR +QDPR SSI LGDP  EN WTTSNRM +WYAPETY RQ TP+F
Sbjct:    1 MPDLRSRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGDPAAENLWTTSNRMPNWYAPETYARQTTPNF 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ1_ECTSI1.770e-4169.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:185861..191533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008870.1
Exons6
Model size912
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2012.1prot_P-fluviatile_contig14.2012.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 185861..191533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.9167557-CDS-P-fluviatile_contig14:185860..1860981622815593.9167557-CDS-P-fluviatile_contig14:185860..186098Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 185861..186098 +
1693562373.3549857-CDS-P-fluviatile_contig14:185860..1860981693562373.3549857-CDS-P-fluviatile_contig14:185860..186098Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 185861..186098 +
1622815593.9328275-CDS-P-fluviatile_contig14:186601..1867431622815593.9328275-CDS-P-fluviatile_contig14:186601..186743Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 186602..186743 +
1693562373.3698716-CDS-P-fluviatile_contig14:186601..1867431693562373.3698716-CDS-P-fluviatile_contig14:186601..186743Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 186602..186743 +
1622815593.9443762-CDS-P-fluviatile_contig14:187842..1879791622815593.9443762-CDS-P-fluviatile_contig14:187842..187979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 187843..187979 +
1693562373.379744-CDS-P-fluviatile_contig14:187842..1879791693562373.379744-CDS-P-fluviatile_contig14:187842..187979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 187843..187979 +
1622815593.955166-CDS-P-fluviatile_contig14:188459..1886381622815593.955166-CDS-P-fluviatile_contig14:188459..188638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 188460..188638 +
1693562373.3940015-CDS-P-fluviatile_contig14:188459..1886381693562373.3940015-CDS-P-fluviatile_contig14:188459..188638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 188460..188638 +
1622815593.9678948-CDS-P-fluviatile_contig14:190723..1908641622815593.9678948-CDS-P-fluviatile_contig14:190723..190864Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 190724..190864 +
1693562373.402479-CDS-P-fluviatile_contig14:190723..1908641693562373.402479-CDS-P-fluviatile_contig14:190723..190864Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 190724..190864 +
1622815593.9782128-CDS-P-fluviatile_contig14:191458..1915331622815593.9782128-CDS-P-fluviatile_contig14:191458..191533Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 191459..191533 +
1693562373.410243-CDS-P-fluviatile_contig14:191458..1915331693562373.410243-CDS-P-fluviatile_contig14:191458..191533Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 191459..191533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2012.1

>prot_P-fluviatile_contig14.2012.1 ID=prot_P-fluviatile_contig14.2012.1|Name=mRNA_P-fluviatile_contig14.2012.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=304bp
MPSSNTGIRRRRLEPPPAPSVLLARNKAMKTKLSTSSLVLGDVGPETRDW
SLSSTQQRPSGFAGALDPAQRAIDLAVKKAPQTGQIILGDHRADWSSSNA
MPVPTGDMSRYRGRLDIEKANVIKSSSLKMGSANPNSEYTTSMSSEGLKA
PDRNLAAELFNSNRLLRNKLKEAGRTTRIIDPDVDDNGTRYTSSNIMPDL
TSRMHEAKSKASQEVMQRIRQSNVQLGDSRVKIMTTTQNDSMDQVVEATR
NMEPGFNARARQDPRHSSITLGDPDTENQWTTSNRMLDWYAPETYTRQAT
PDF*
back to top

mRNA from alignment at P-fluviatile_contig14:185861..191533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2012.1 ID=mRNA_P-fluviatile_contig14.2012.1|Name=mRNA_P-fluviatile_contig14.2012.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5673bp|location=Sequence derived from alignment at P-fluviatile_contig14:185861..191533+ (Porterinema fluviatile SAG_2381)
ATGCCTTCCAGTAACACCGGCATCCGGAGAAGGCGATTGGAGCCGCCACC
GGCGCCGAGCGTGCTATTGGCACGCAACAAGGCCATGAAAACGAAGCTGT
CGACTTCGTCCTTGGTCCTTGGTGATGTCGGCCCGGAAACGAGAGACTGG
AGTCTTTCTAGTACGCAGCAACGGCCCAGTGGTTTTGCCGGAGCGCTGGA
TCCGGCTCAACGAGCCATCGATTTGGCCGTGAAAAAAGGTAAGATGCGCA
CGAGACGGCGGTGTGTAGCAACAACAACATCACGCCGAGGGTCAAAGCTT
GTTTTATTTCCCATGAGGATTGAAAATTTCGGGCTGGGCTCAAGACATCA
AGACACCTGTATATAGTTTATTCGCGCGCAGCCGTGGTTCTCGCGATCAT
GTCAAAGCAAGTCTCTAACGAAGATCTCTAACGATGATAACTAGGTTCTA
GATCTGACAGCAGTGATTTTCCCTGAGTTTGGTACAGAACAAGATCGAAG
AGTCCGGGCCGCAGGGTCATAGAAACCCGATGGATTTTCCCCGACAGCTA
TCGGACCAGCCTAAAATGGGGGCGTTGTGATGAACGGATCGCACAGTCGC
CCAACACTCGCCTGCATACGTCATCGTTAGACTGCGCCGATGTTTGGATG
TATTCTCTGCTTCGTCTTCTCGCTACTCCCATCTAAATGATCTTGCGGCG
TTGCTTGGGCGTCCGGTCGCGGCAACGCACTCCCGTTATAGCACCACAAA
CGGGTCAAATCATCCTGGGGGATCACCGCGCCGATTGGAGCTCTTCTAAC
GCTATGCCGGTGCCGACGGGCGACATGTCTCGCTATAGGGGGCGGCTCGA
TATCGAGAAAGCAAATGTGATCAAGAGCTCAAGGTATCGATTCCGCTACG
GAGGATCGACTCGGCATTTTCCCGTATCAGACGTCAAGTTGACATTTTGG
GGGAAGCCGTGCGTTCGTGTGTGCTCCTTATCGTCGTTCATATCGGTAAT
CTTAACCTCGGAGGCGTCATCCTTCTTGTGCGATCAACCAAGATTAGACC
TGACAACACCACTCCCAGCGCAGCCGGGTTGTGTTGCGCGGAATTAACGT
TTGCATGTATCGCGAAAAGGCTCCGGCTATCCCCATTCCTTACCAGTGAT
GGCGCCAACGTTCATGATTGTGCCCTCTGAACAAGCATTTTTCTTGACAC
GTCAGCCCTGGACTTCAACCCGAAATGACGATCTCCCAAACGTTTTGCGG
ATACCTACAGACCGAAGGGGCGTTTTCAAATATTCATTCAATTCGCTTGT
GGGGACCACCCTCACAGGGGTCGCATCACCCGAAAGTCTGTCGAGGACGA
AGCCCTCTTTTCCACAATGGCGTCAACGAAGAGATAAGATGCTGGCTTTT
GGTGGACAGAGTTCCGAGTGCGAATCCCCCCTGTCGTTACTTCTTTTTCA
GGAAAAAAGTCAAAAAATAACTTTTCCACATAAAAAGAAAAACACGCACA
AAGGATCGAAACCAAAAAACACTGTACTCGAACTCGAACTCTGAACTTCT
GACAAGACGTGGCGGAGGTGATGAGCCCGCACACACGCACAGAAGATTGT
CGGAGAAGAGGTTGGACGACTCGCCGCCAGCCGGTCGGGTTCCGGTTACC
CCTAAGAGCCTTCTTGACTAGCAACCAAGAAAAAGACTCGAAAAATGGAA
TGTGGGTAGCACCCTCATAAGGTTCGGATCACCTAAACGTCTGTAGACGA
CGAGACCCTCCTTTCCACACGCTGAATCGTTGATTTGTTGATTGTGAGTA
AGATATTGCCCCCCCTGCTTTTGACCCAGGGAGAAACCTTGAATAAAAGC
ACCGGAAAATTGGAAATTAATGCTGCGGACTTCGTTGTATCAGGTTAGGT
ACTCGGAACCATGCCTCATTCACCGAAACCAGCAATATTACAAAGATTGT
GATCGTTCGCTATTATTGTGTCTCTTCCCAAGCCTTAAGATGGGATCGGC
CAACCCGAACTCGGAGTACACAACATCCATGTCAAGCGAAGGCTTGAAAG
CTCCAGACCGAAATTTGGCCGCCGAACTATTCAACAGCAATCGGTTGCTC
CGCAACAAGCTCAAAGAAGGTGAATCGAACGTGGCCAACCCACGAGAGAA
GGAATTTTGATTATTTTGCAAGTGATCCGACCTATGAATACAAAAAACCT
GCAGTTTTGCGAACGGGCGTTGAAGCCATCCTTTCGTGGTAATGAAAATC
TTGTCAACAAAAGTCGTCTTGTCGGGTCGCGACCGGATATTTCTTGCAGG
CAGCGGTGTGTGCTGGAACACGTCTCAAAAAAGGGAGCGTGAGTTTCAGC
GTTGTTTTTTCCTTTCCTCTCATTTATCGAAAATGCAGCAGGGAAGCAGA
TATTCACCCAACAGGTTAGTGTGTGCAGTTCGTTGCCGATTCACGTCACG
AGCGCCCGTACCGCGCCTAGGCTGGGTAAATGAGAACGGCTCAGGACCTC
AGCCGCAGGTTCCACAATTTTGTGACACTCCGTGTCTGTAACCCTTCGAG
CGCGTCCATACTCGCATTGTCGTTCCCTATCCACACCTACCTTCCCCAGC
CGGGCGAACAACGCGAATAATCGATCCCGACGTCGACGACAACGGCACAC
GCTACACGAGCAGCAACATTATGCCCGATCTCACGAGCCGGATGCACGAA
GCCAAGTCGAAAGCGAGCCAGGAAGTTATGCAGCGGATCCGGCAGTCCAA
TGTACAGCTCGGAGACAGCCGGGTCAAGGTACCGGTGATACTCCTTCCGC
GCAGAATCGATACTAATCTCACTCCTACCCCCCCCACATAGCTCTTGTCG
ATCTCGCGGAGCTGAACCTCGTGCCTGCTCGTTATCTGACGCGTATCATG
AAGTTGTTGAGTTGACCCGTCTCTCACGTTAGTCCTTCAAGCCAAAATGA
CCTGAGGTCAGGATTTGTTGGTTTGGTGAGTGTTACTGCTGGTGGTGTTT
GAAGGACAAAAGACGAATCGCGCACTAGATTATCGTGGAGTTGTCTCTAT
GAGCCGGCCCAGGGGCGACGGAATTCCGCTTTGCAAGGTGAGAGTCGCCC
GATACGCTCAGGTCTCGTATGCAATTTCCACCGTTCTTGGAACTTCGATA
AACACGTTTTCGTACGACTCCCATGTTTTCATTTCGGTTTCGTAATGAAA
GGTTTCCTTCGTGACTGAGGTTTCGTCGGTAAGTGAAGACAGAATCTCGT
CATGATTAAAGCGCGTTTTCGTCGCAAAATCCTTTTGTTATTTAACGCCA
TGTGCTAAGTTGATGTTGATTTTTGCCGTTCTTGGACTCCCGACGAGTAC
CCAGCTCCGTAAAGCTGAGCGCTTGTTTGCAAAGGTTGTATAGCATAGAT
GCAGAAAAAATATACATCACCGCTCGCCAATACCTTCACCACGTCCTGGA
GTGAATACACCATGATATTACGACGTACAACTATTTTCCATCACGATTAC
TCGAGAAACATATTATTGTGAGTTAGTTGCTCGTTATTTTATGGTCTCGC
ATGGATCCATTCCTCCTCTTGGGCCTTGTCGTAGTGGCGCCAGGGCCCTG
TGCCAATTGTTGTCGCTTTTCGGTCTCTTGTATCTGTCTAGCCTTGGAGT
TCGTATCAAGAATTTCTATCCTCGTCACTTAGCTTCCCCTTCATGCAGTA
TCTTCGTACATGGTATCATCATTACTGAAGCTGCTACAGCATATTACCTT
AGTGTATTCGTACAACAGATGTCTTCACCTACATCCTACGTGTAACGGAA
ACCCGATCTATCCAAAACGAATACCGGTCGCTTCGTTACGGCAAAGAGTT
CGGTATTGAACAAAAACCCAGCCATTGTGCAACGGAACAAGATGTGGATG
GAACGGGAAAACATCCGATGGGTAACGGACAACTGATCCATGTGAAACAG
ACAACAGGCCGATGTGTACAAAAGCGTCTGACAGGAAAGACCGACCTTTA
TTCACCCTAATGGAAAATTGTCCGATGCGTAACGGAAAAACCTGCCAACG
CAGAAGTGAAAACCAGCCGATGTGTAACGGGCAATCGGCCGATGTGCAAC
GAATACCGGCACACGTGTGACTGAGAACCGGCCAATGATTTGTAATGGAA
AATCGTCCGATTTATAGCTGACAATCGTCCGATGTCCAATAGTCAATCGG
TCAATAATGTGTAACGGGTGATGTGTAACGGGAACCTGTTATGTGTCACG
GATAACCGGGCGATGTGTGTTACGGAAAAACCGTCCGATGCGTAACGGAA
AACCGGTCGAAGTGTCACGAATAACCGGCAGAGGTGCGCTGATGATGTGC
AACGGAAACCCGTCCAATATGTGACGGAAAACTGGCCCGATGTGCAACGG
ATGTGTGATGAAAAAACGCCCGATTTTAAAAGGTCAACCGGTCGATGATA
TGTAACGAGTGTGTGACAAAAAACCACCCGATAATGTGCAGCGGAAAACA
TGCTGCTGTTGGACGAAAAGCCGCTCCATGTGTAACCGCCAATCGATCGA
TGATGTGTGACGGAAAATCCGCCGATGCTTGCAGGAAAACCGGTCCAACG
TTTTACCAAAAAGTGGTTGAAGGGTAACGAATGACCGGCTCATGTGTAAG
AGATAGTCGACCGACGTGAGTATCGGGAAACCATCCGGTGTGTTACGGAA
AAATCGGCCGATGTTTAACAGAAAGCCGGCTGATGATGTGTTACGTAAAG
CCTGTCGATGGTAAACGAAAAGTCGTGCAACACCCACCCGTTGATTGCCA
AGTCCTCGCTTGCGCGTAACCTTTGCTTTATCGTCCCCTTGTGTGCAACC
GCCGGGATGATAGATAATGACGACAACGCAGAACGACTCGATGGACCAAG
TTGTGGAGGCAACCAGGAATATGGAGCCCGGGTTCAATGCAAGAGCCAGA
CAGGACCCGCGGCACTCGAGCATAACGCTGGGAGACCCGGATACGGAAAA
CCAGGTGGGCGCCCACGTGCATGCAAGCACATCCTTAAAAAGTTGTGCGA
GTCGATTTTGAGGGGAGGCGCAACGTAAAGTCGAGGACTTCCTTGTTCAA
CCTGGCTCTGACTTCGAGATGCCATTAGGTGGTGAGAATAGCGCGAGCAC
CTAGGCCTTTGGCTTTTTTTGAATGCAGTCCTTTGTCAATTCGCGCCGCC
TGTCTTCGAGGAACCGGGCGCTTAATCATTCAATTTTTGTGTTTCAACGC
GATAATCATCCACAACAAGAACGAGAAAGACGCTCTCGATTCGTCCCGGA
CCATGCAGCGCTCCTTTCATCTGAGGCTCGGATTTGGAGGGGGTGGGCCA
TTCGACTGCTTGTGCCCCCGACACCGCGAGTAATGCAACGCTCGTTCGGC
GACAGACAGCATCCAAGAAATAGCGCTGGCACGGCACACCGAAATGCTGG
AACACCCGTTCGGTCCTCGAAACGAGTCTGGACATGTAATGCGTTCCCTA
CATCGTCCGTATACCGTGCTTTCCCCCTATAAGTGCTGTTGTTTGTGTTT
GCCGCGCGTTTTTTCCTCGCCTTGCTACTCTTCTCTTTATGTTGTAAGTG
GACGACGTCAAACAGAATGCTTGACTGGTACGCACCAGAAACGTACACCA
GGCAGGCCACCCCGGACTTCTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:185861..191533+

>mRNA_P-fluviatile_contig14.2012.1 ID=mRNA_P-fluviatile_contig14.2012.1|Name=mRNA_P-fluviatile_contig14.2012.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1824bp|location=Sequence derived from alignment at P-fluviatile_contig14:185861..191533+ (Porterinema fluviatile SAG_2381)
ATGCCTTCCAGTAACACCGGCATCCGGAGAAGGCGATTGGAGCCGCCACC
GGCGCCGAGCGTGCTATTGGCACGCAACAAGGCCATGAAAACGAAGCTGT
CGACTTCGTCCTTGGTCCTTGGTGATGTCGGCCCGGAAACGAGAGACTGG
AGTCTTTCTAGTACGCAGCAACGGCCCAGTGGTTTTGCCGGAGCGCTGGA
TCCGGCTCAACGAGCCATCGATTTGGCCGTGAAAAAAGATGCCTTCCAGT
AACACCGGCATCCGGAGAAGGCGATTGGAGCCGCCACCGGCGCCGAGCGT
GCTATTGGCACGCAACAAGGCCATGAAAACGAAGCTGTCGACTTCGTCCT
TGGTCCTTGGTGATGTCGGCCCGGAAACGAGAGACTGGAGTCTTTCTAGT
ACGCAGCAACGGCCCAGTGGTTTTGCCGGAGCGCTGGATCCGGCTCAACG
AGCCATCGATTTGGCCGTGAAAAAAGCACCACAAACGGGTCAAATCATCC
TGGGGGATCACCGCGCCGATTGGAGCTCTTCTAACGCTATGCCGGTGCCG
ACGGGCGACATGTCTCGCTATAGGGGGCGGCTCGATATCGAGAAAGCAAA
TGTGATCAAGAGCTCAAGCACCACAAACGGGTCAAATCATCCTGGGGGAT
CACCGCGCCGATTGGAGCTCTTCTAACGCTATGCCGGTGCCGACGGGCGA
CATGTCTCGCTATAGGGGGCGGCTCGATATCGAGAAAGCAAATGTGATCA
AGAGCTCAAGCCTTAAGATGGGATCGGCCAACCCGAACTCGGAGTACACA
ACATCCATGTCAAGCGAAGGCTTGAAAGCTCCAGACCGAAATTTGGCCGC
CGAACTATTCAACAGCAATCGGTTGCTCCGCAACAAGCTCAAAGAAGCCT
TAAGATGGGATCGGCCAACCCGAACTCGGAGTACACAACATCCATGTCAA
GCGAAGGCTTGAAAGCTCCAGACCGAAATTTGGCCGCCGAACTATTCAAC
AGCAATCGGTTGCTCCGCAACAAGCTCAAAGAAGCCGGGCGAACAACGCG
AATAATCGATCCCGACGTCGACGACAACGGCACACGCTACACGAGCAGCA
ACATTATGCCCGATCTCACGAGCCGGATGCACGAAGCCAAGTCGAAAGCG
AGCCAGGAAGTTATGCAGCGGATCCGGCAGTCCAATGTACAGCTCGGAGA
CAGCCGGGTCAAGCCGGGCGAACAACGCGAATAATCGATCCCGACGTCGA
CGACAACGGCACACGCTACACGAGCAGCAACATTATGCCCGATCTCACGA
GCCGGATGCACGAAGCCAAGTCGAAAGCGAGCCAGGAAGTTATGCAGCGG
ATCCGGCAGTCCAATGTACAGCTCGGAGACAGCCGGGTCAAGATAATGAC
GACAACGCAGAACGACTCGATGGACCAAGTTGTGGAGGCAACCAGGAATA
TGGAGCCCGGGTTCAATGCAAGAGCCAGACAGGACCCGCGGCACTCGAGC
ATAACGCTGGGAGACCCGGATACGGAAAACCAGATAATGACGACAACGCA
GAACGACTCGATGGACCAAGTTGTGGAGGCAACCAGGAATATGGAGCCCG
GGTTCAATGCAAGAGCCAGACAGGACCCGCGGCACTCGAGCATAACGCTG
GGAGACCCGGATACGGAAAACCAGTGGACGACGTCAAACAGAATGCTTGA
CTGGTACGCACCAGAAACGTACACCAGGCAGGCCACCCCGGACTTCTGAT
GGACGACGTCAAACAGAATGCTTGACTGGTACGCACCAGAAACGTACACC
AGGCAGGCCACCCCGGACTTCTGA
back to top