mRNA_P-fluviatile_contig14.2011.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2011.1
Unique NamemRNA_P-fluviatile_contig14.2011.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A6H5KTN5_9PHAE (DJ-1_PfpI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTN5_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.810e-39
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1 
Query: 1342 GVKHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQ 1620
            G KHVLVP+ADGSEEIESVTIIDTLVRAGA VTVAS+  ++EVTCSRGVKIKADCKIA+CE RDWDAVVCPGGMPGAV+LKE+ TLE IL++Q
Sbjct:   55 GAKHVLVPVADGSEEIESVTIIDTLVRAGALVTVASIGPEVEVTCSRGVKIKADCKIAECEARDWDAVVCPGGMPGAVSLKENETLEAILRKQ 147
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A482RT38_9ARCH (DJ-1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT38_9ARCH)

HSP 1 Score: 122 bits (307), Expect = 3.860e-28
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1 
Query: 1348 KHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKR 1617
            KHVLVP+A GSEE+E+VTIIDTLVR GA VTVA V S++ VTCSRGVKI ADC I+DC  + WD +VCPGGMPGA +L ES TL  IL++
Sbjct:   13 KHVLVPIATGSEEVEAVTIIDTLVRGGAKVTVAGVGSELTVTCSRGVKIVADCLISDCANKSWDMIVCPGGMPGAQHLSESHTLIEILQK 102
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A6V1PTF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PTF7_HETAK)

HSP 1 Score: 116 bits (290), Expect = 2.240e-25
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 1 
Query: 1312 VMADPTTAAGGVKHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQVRLEKSSMRSVSCAKLSLALRALSIAEGCASLC 1719
            +M+D T +A   K VLVP+ADGSEEIESVTIIDTLVRAGA VTVASV+ +++VTCSRGVK+ AD  IAD     +DA+ CPGG+PGA +L++  TL  +L  Q + E   + +  CA  ++ L+   +  G A+ C
Sbjct:   45 MMSDATGSAA--KKVLVPIADGSEEIESVTIIDTLVRAGAEVTVASVSPELQVTCSRGVKLVADKSIADAAGETYDAIACPGGLPGANHLRDDPTLRALL--QAQNEAGRLVAAVCAAPAVVLQTHGLIAGRAATC 176
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A6S9E808_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E808_HETAK)

HSP 1 Score: 114 bits (286), Expect = 3.400e-25
Identity = 66/124 (53.23%), Postives = 87/124 (70.16%), Query Frame = 1 
Query: 1348 KHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQVRLEKSSMRSVSCAKLSLALRALSIAEGCASLC 1719
            K VLVP+ADGSEEIESVTIIDTLVRAGA VTVASV+ +++VTCSRGVK+ AD  IAD     +DA+ CPGG+PGA +L++  TL  +L  Q + E   + +  CA  ++ L+   +  G A+ C
Sbjct:   24 KKVLVPIADGSEEIESVTIIDTLVRAGAEVTVASVSPELQVTCSRGVKLVADKSIADAAGETYDAIACPGGLPGANHLRDDPTLRALL--QAQNEAGRLVAAVCAAPAVVLQTHGLIAGRAATC 145
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: UPI001F2BE06B (DJ-1/PfpI family protein n=1 Tax=Microbulbifer sp. TT37 TaxID=2904250 RepID=UPI001F2BE06B)

HSP 1 Score: 110 bits (276), Expect = 5.500e-24
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1 
Query: 1348 KHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQVR 1626
            K VL+P+ADGSEEIE+VTIID L RAGA VTVASV +   +T SRGV I ADC++A+CEPR WD VV PGGMPGA +L     L  I+++Q+R
Sbjct:    6 KRVLLPVADGSEEIEAVTIIDVLRRAGAQVTVASVMASETITASRGVVITADCRLAECEPRRWDLVVLPGGMPGAAHLAADRQLMEIVRKQLR 98
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A4D9DGQ5_9STRA (DJ-1_PfpI domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DGQ5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.910e-23
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 1 
Query: 1348 KHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVA---------SDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQVRLEKSSMRSVSCAKLSLALRALSIAEGCASLC 1719
            K VLVP+ADGSEEIESVTI+D LVRAGAAVTVASV          S  +VTCSRGVK+ AD  I DC   +WD + CPGG+PGA +L++S  L T+L+RQ + E+  + +  CA  ++ L+A     G  + C
Sbjct:   61 KKVLVPVADGSEEIESVTIVDVLVRAGAAVTVASVMPSASTATLPSPWQVTCSRGVKLVADKGIDDCLGEEWDLIACPGGLPGAEHLRDSPALLTLLQRQDKAER--LVAAICASPAVVLQAHGFLTGKRATC 191
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: K8Z3U6_NANGC (Dj-1 family protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3U6_NANGC)

HSP 1 Score: 108 bits (270), Expect = 4.690e-23
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 
Query: 1348 KHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDI---------EVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQVRLEK 1635
            K VLVP+ADGSEEIESVTIID LVRAGAAVTVASV             +VTCSRGVK+ AD  I DC   +WD + CPGG+PGA +L++S  L T+L+RQ + ++
Sbjct:    6 KKVLVPVADGSEEIESVTIIDVLVRAGAAVTVASVMPSASTATLPRSWQVTCSRGVKLVADKGIDDCLGEEWDLIACPGGLPGAEHLRDSPALLTLLQRQDKAQR 110
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A7S1UBZ8_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBZ8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.610e-23
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 3 
Query: 2226 SKHIKSTL--------QDSEGRIIAAICAAPAVVLASHGLLEGRKATCYPAGTFTEKIPQLVDEKVVVDGNVVTSQGPATSMAFALQLVDSLFGPAKAEEIAKALL 2519
            +KH+K +         Q    R+ AA+CAAPAV LA +GLLEGR+ATCYPA    E +PQ  D+ VV DGNV+TSQGP TS+ FAL+ V++L+G  KA+E+A  +L
Sbjct:  143 AKHLKESAALQALLASQRDSDRLFAAVCAAPAVALAGNGLLEGRRATCYPAPALREALPQASDDLVVKDGNVITSQGPGTSLLFALRCVEALYGKGKADELAAEML 248
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: A0A813HFA6_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HFA6_POLGL)

HSP 1 Score: 106 bits (264), Expect = 1.840e-22
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1 
Query: 1354 VLVPMADGSEEIESVTIIDTLVRAGAAVTVASVASDIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETILKRQVRLEKSSMRSVSCA 1662
            VLVP+AD SEEIE+  I DTL RAGA V VASV  +++V  SRG+KI ADC I DC  ++WDA+VCPGGMPGA +L++S  L  +LK Q +  +S + +  CA
Sbjct:    6 VLVPVADDSEEIETACITDTLTRAGAKVVVASVMPNLQVKMSRGLKIVADCSIEDCAGKEWDAIVCPGGMPGAEHLRDSPALIELLKEQSK--RSKVTAAMCA 106
[Close]
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Match: D8LVY8_BLAHO (DJ-1_PfpI domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LVY8_BLAHO)

HSP 1 Score: 105 bits (262), Expect = 3.230e-22
Identity = 59/103 (57.28%), Postives = 70/103 (67.96%), Query Frame = 3 
Query: 2220 RVSKHIKSTL--QDSEGRIIAAICAAPAVVLASHGLLEGRKATCYPAGTFTEKIPQLVDEKVVVDGNVVTSQGPATSMAFALQLVDSLFGPAKAEEIAKALLF 2522
            R SK +   L  Q  EGRI AAICA+PAVV ASH LLEG KATCYP+  F E I   V++KVVV GN +TSQGP T   FALQLV+SL G A    +AK +++
Sbjct:   80 RDSKTLSKLLEKQKEEGRIYAAICASPAVVFASHNLLEGVKATCYPS--FKEDIEHYVNDKVVVSGNCITSQGPGTVAEFALQLVESLCGKATRASVAKGMIY 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTN5_9PHAE7.810e-3982.80DJ-1_PfpI domain-containing protein n=2 Tax=Ectoca... [more]
A0A482RT38_9ARCH3.860e-2868.89DJ-1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A6V1PTF7_HETAK2.240e-2551.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9E808_HETAK3.400e-2553.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI001F2BE06B5.500e-2462.37DJ-1/PfpI family protein n=1 Tax=Microbulbifer sp.... [more]
A0A4D9DGQ5_9STRA2.910e-2351.13DJ-1_PfpI domain-containing protein n=3 Tax=Monodo... [more]
K8Z3U6_NANGC4.690e-2358.10Dj-1 family protein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S1UBZ8_9STRA5.610e-2351.89Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A813HFA6_POLGL1.840e-2255.34Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
D8LVY8_BLAHO3.230e-2257.28DJ-1_PfpI domain-containing protein n=1 Tax=Blasto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:179838..185441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue4.5e-36
Seed eggNOG ortholog2880.D7FQJ0
KEGG koko:K03152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006081,GO:0006082,GO:0006089,GO:0006457,GO:0006464,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009266,GO:0009408,GO:0009438,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019249,GO:0019538,GO:0019752,GO:0022613,GO:0030054,GO:0030091,GO:0031090,GO:0032787,GO:0033554,GO:0034599,GO:0036211,GO:0036524,GO:0036525,GO:0042026,GO:0042180,GO:0042182,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046394,GO:0046686,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051596,GO:0051716,GO:0055044,GO:0061727,GO:0065007,GO:0070887,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080134,GO:0080135,GO:0098588,GO:0098805,GO:0140096,GO:1900407,GO:1900409,GO:1901135,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902882,GO:1902884
EggNOG free text desc.guanine deglycation, methylglyoxal removal
EggNOG OGsCOG0693@1,KOG2764@2759
EC3.5.1.124
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categorysignal peptide
Ec32 ortholog description4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
Ec32 orthologEc-01_008860.1
Exons4
Model size3339
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2011.1prot_P-fluviatile_contig14.2011.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 182391..184433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.8200862-UTR-P-fluviatile_contig14:179837..1807141622815593.8200862-UTR-P-fluviatile_contig14:179837..180714Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 179838..180714 -
1693562373.2844417-UTR-P-fluviatile_contig14:179837..1807141693562373.2844417-UTR-P-fluviatile_contig14:179837..180714Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 179838..180714 -
1622815593.8325984-UTR-P-fluviatile_contig14:181370..1814651622815593.8325984-UTR-P-fluviatile_contig14:181370..181465Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 181371..181465 -
1693562373.2953095-UTR-P-fluviatile_contig14:181370..1814651693562373.2953095-UTR-P-fluviatile_contig14:181370..181465Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 181371..181465 -
1622815593.846794-UTR-P-fluviatile_contig14:181976..1823901622815593.846794-UTR-P-fluviatile_contig14:181976..182390Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 181977..182390 -
1693562373.3042946-UTR-P-fluviatile_contig14:181976..1823901693562373.3042946-UTR-P-fluviatile_contig14:181976..182390Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 181977..182390 -
1622815593.8828797-UTR-P-fluviatile_contig14:184433..1854411622815593.8828797-UTR-P-fluviatile_contig14:184433..185441Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 184434..185441 -
1693562373.3414526-UTR-P-fluviatile_contig14:184433..1854411693562373.3414526-UTR-P-fluviatile_contig14:184433..185441Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 184434..185441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.8603506-CDS-P-fluviatile_contig14:182390..1828761622815593.8603506-CDS-P-fluviatile_contig14:182390..182876Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 182391..182876 -
1693562373.3138833-CDS-P-fluviatile_contig14:182390..1828761693562373.3138833-CDS-P-fluviatile_contig14:182390..182876Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 182391..182876 -
1622815593.8722274-CDS-P-fluviatile_contig14:183974..1844331622815593.8722274-CDS-P-fluviatile_contig14:183974..184433Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 183975..184433 -
1693562373.3309793-CDS-P-fluviatile_contig14:183974..1844331693562373.3309793-CDS-P-fluviatile_contig14:183974..184433Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 183975..184433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2011.1

>prot_P-fluviatile_contig14.2011.1 ID=prot_P-fluviatile_contig14.2011.1|Name=mRNA_P-fluviatile_contig14.2011.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=315bp
MTILASSLLGVLPKAHAFIGGRACVLPKTSITAAGRVCSTATAAATAATG
TATAATTTFARRTPLALSHYWVGGVAVAVIHKRGLTGTPTALRMFASAGD
SVMADPTTAAGGVKHVLVPMADGSEEIESVTIIDTLVRAGAAVTVASVAS
DIEVTCSRGVKIKADCKIADCEPRDWDAVVCPGGMPGAVNLKESGTLETI
LKRQVRLEKSSMRSVSCAKLSLALRALSIAEGCASLCGTSGAHNLRFCAL
SALSPTSADLPIAQQLRRKGPFIRHHRELLCVSCSFPHLAQYRSRSRSVS
RSSRHNRVHDQALT*
back to top

mRNA from alignment at P-fluviatile_contig14:179838..185441-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2011.1 ID=mRNA_P-fluviatile_contig14.2011.1|Name=mRNA_P-fluviatile_contig14.2011.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5604bp|location=Sequence derived from alignment at P-fluviatile_contig14:179838..185441- (Porterinema fluviatile SAG_2381)
TGTGAATCGTTAACCGCTGCGTGTGCGTCGACCCCCGGAAGGAATGATAG
GTACGACGGTAGGTACGGATCGGCATAACCCATATCGTGCCTGTGTTTTC
CTCCCTTCTAAGATGCAAAAGTTGATGTTCGAATTTTTGTGAGACGGTTG
CAGCATGTATGCAAGGGGACACATCGAGAGGGGCAATCGTTCCGCACTAA
TGCGTCAGCTGCCATGAACCCGCACGGCCGTCATGTGGTGGTCGGTTGTC
GGCGTTATTGGCTTGAAGGGTGGCTTTGTACGCGCCGTATTTTCCCGGTC
GTATTTAAGGTTCTTAACGACGAAGCCATCCGCACTGAATCCTGTGTGAA
ACTCGATCAGTCTAGAAGCACAGGCTTGTACCCTGGCCCAAGAGGATAGT
CACATGATGAGGTCTTCGAAGTACACACGACACCGATCAAGGTGATGGTA
ATCGCTAACGGCTGTTTCTCGCATATGTTTTTAATGCAAAATTAATTGCG
GCTGTCATCGACCTTGATGTAAGTTGTGCTACTTCGATCTGAACGTCATC
TCTGGCCTGTTGCTTATGTCGGCGGATGTGGCACGCACATACTCGTAACC
CATGGCTGGAAAACGCGGCAAATAGGGAATGAACGCCGAAAGTTCGCCGT
GGCATCAGCGCTTCTGTTAGGACTCACTGGGTTTTTGTGCTGTCTCCTTC
TGTACCCCCACGCTGGAAGCGGGCTCATTTAACCTGGCCTCAGGTAAACG
TTCACATCGGGTTGCCAATCGCTTGCCGCAAATCTCAACTATCCTCACCA
CTCTTTCGCCTCGTATCCACCCCCTCCCTGTCTTCGCCTTGCTCGCCTTC
CTCCCGCTTTGTTGTTCGTGGTGTCACTTCATCGTCTTTCACTTGTCTTT
GTTGACGTCGTGGGCGACACCCCATCTCTCCCGCGTCCGTTTATAACAAA
AACCACCGACCCAAAACCACCCAATCCACCAACGGTGGACCCTGTCGGAG
TAGTAGCGATGACGATTCTGGCGTCATCGCTCCTTGGGGTCTTGCCCAAA
GCTCACGCTTTTATCGGAGGCAGAGCTTGCGTCTTGCCGAAAACTTCAAT
CACAGCAGCCGGGCGGGTTTGTTCCACAGCCACCGCTGCCGCAACGGCCG
CTACCGGCACGGCCACCGCCGCTACGACCACCTTCGCTCGCCGTACACCC
CTCGCACTCTCGCACTACTGGGTTGGCGGGGTGGCGGTTGCAGTGATTCA
CAAGCGAGGTCTCACAGGTACCCCGACGGCGCTGCGGATGTTCGCCTCGG
CAGGCGATAGTGTCATGGCAGACCCAACAACGGCGGCGGGAGGGGTGAAG
CACGTATTGGTCCCGATGGCCGACGGCTCGGAAGAGATAGAGAGCGTGAC
CATCATTGACACCCTCGTCCGGGCGGGCGCAGCGGTGACCGTGGCAAGTG
TGGCGAGTGATATTGAGGTGCGCAGAAGCAACTCCCCCCTCCGCCCTTAT
TTTTTTACCGCGCCCTAGATGTACATGTGGCGAGGATTCTGATTTGTTCC
TTGCTGAAGGCTGGATTTCCTTCCTTGCTGAAGGCTGGATTTCCTTCCTT
GCTGTGGGCTTGATTTGACCTCATCGGGTAAAGGGGGCGGGGGGGGCGGT
CAAAAGAGGGACCCTACTTCCTCAAGGAAGGTTTTCGAGGTGAAGCTTTC
CTGAAGCGTACAGCCTCGTCGGCGACTCGCTGGTTCTCGTGATGACGACA
GAATGAGGACGCCTTGCTGAGTAAGAGTCGTTTCCACCCCTGGTCGGACA
CCTCCGTTTCACGCGTGCCTGTGCCGCTGTGTTTCCAAATGTCCGCCGGC
GTCGCGAGAAGCCGGCGGTCCTCGGTGGTGGAAATACGTGCGGTTGTTGT
CAACCGGCCCCCCTCCGCGAAGAAGAGGGGAGAGCGAAAGCCGTACGGAG
TTTTCATTATTCTAATAACATTCAAGAGCGCACAAATGCACCCTCTTTGC
CAATCTTTAGACCACAGCACAATGCCGGCAATGTGGCATTCCAGTCAGCA
CGAACAAAACCTCTTGATCGGCGAAAGTCATTCAAAAATACAAAACCCGC
AGTACAGGGCCTTTTATTTTCCAGCCCGTATGACCTCCAGATGCATGCAG
CGCCCAAACGGCTCAAGAAAAAAAGGGCGAAATGATGTCGGGACTCACGC
AAAAATAGCGATGTCATATTCTTGAACAGAGTCACGCCAATCTCTCGTGA
TTGGTCAGCAGTTCAGCCGTTCAGCCCGGCCTTCACCGCGGTAGCAGCGG
AACATGCACAGGTTTCCGTCAACGAGAAACACATATGCTGCTCCTTGAAT
TACGGTATATAATGTTATCCTGGGGCGGTGATCGGGGCTTTGACTAGAGG
CGCTACGCTCCGCTGCCCGGCCGTGAGTTCGTGGATTGAAGTGCCACTGC
TGTTCCGATGTGGATTTGTTTTTATATTGTATGGGATACTCTTTTTTCTG
ATCTACGCCCCAATTTTTTTTTTTCCTCTTGCCTTGCGCCTCATGTGTTG
CCACCGCTCGCGCAGGTGACGTGCTCGCGAGGGGTAAAGATAAAAGCTGA
CTGCAAAATCGCCGATTGTGAGCCCAGAGACTGGGATGCCGTCGTATGCC
CCGGAGGAATGCCGGGCGCCGTGAACCTCAAGGAGAGCGGGACGCTCGAG
ACTATTCTAAAGCGACAGGTTCGATTGGAAAAGTCCAGTATGAGGTCAGT
TAGCTGCGCAAAGCTCTCGCTGGCTCTGCGCGCCCTAAGTATCGCCGAGG
GGTGCGCGAGCCTGTGCGGAACGTCGGGTGCCCACAATCTAAGGTTTTGT
GCGCTTTCGGCTCTCAGCCCTACCTCTGCTGATCTACCTATAGCACAGCA
GCTCCGGCGGAAGGGTCCGTTCATTCGGCATCACCGAGAGCTTCTGTGCG
TATCTTGTAGCTTCCCACATCTTGCGCAGTATCGCTCTCGCTCTCGCTCT
GTGTCCCGCTCGTCACGTCATAATCGCGTACACGATCAGGCCTTAACATG
AACTCTGTCTTATGCTTTCAAATTCACCTGAGGGAGCTTGGTTATCACAT
CCACTGCCTTGAAGCGATACCAGTTTAACGTAATGTGCTGCTTCGGTACT
GGAAGCTGGGGTCCATGATTTTGTTGCGCGGGAATTCATTAACGGATTCT
GAATCTGAGTTCACATCAACAAAACACGAGCTTCTCATTCTGTTTTTTCA
CGATCAAGAACCATGTAGTTTTTCGGCTCGCCTCTGAACATCCAAATTCT
GGTTCGGTCGGCCGTGACGCGTATCAAAACACATAAAATCGACACTGCAG
GATTCCGAAGGGAGGATCATTGCTGCCATCTGTGCCGCCCCCGCTGTGGT
GCTTGCCTCGCACGGGCTGTTAGAAGGCAGAAAAGCGACATGCTATCCCG
CGGGCACCTTCACAGGTGAGGATTAGAGAGGCGCAGGTCTTCTCGCAACC
AGATTTTGGACAGCTGGCAGAAGCCCAGGCAGTTTTGAGCGGCGTGCTTG
TGCGGCATTGGCGCCCTGCCGTCGGTCGACATATCCTTTTCCGAGGTTTA
TCATAGAAGAAAATGAAGTCTGGTTTTCCCGTGTTCGCATTTCCCCCGAA
ATTTTCCTCCTCAGCACGAGGCGTCTGTCTCATTGTTGGCGGTTCTTCGT
CCCAAATGGGATCCAGCTTCATCCAGCCAGTGGACCACAACTCCGTGCTT
CTGTCGTGTGTTCTTAATAAATCGTTCCGGTGTGTGATTGAGCAGCCGAG
ATAAAAAAATTGATAGTATCCACGTCCTTGTGGCTGAACCCGAATTTGCG
CCGTGAGCTTTTGTACGCAGCAACCACACGTGACGCGTCCCTGCAGATAC
GGGCCATGCCTTCACGAATCGAATCGCTTATTGAATGTTGGTCATTTCGC
CCCCCCGTGCCAACGCATAACTGCAGAAAAAATCCCGCAACTCGTGGACG
AGAAGGTGGTGGTGGACGGGAATGTGGTCACGAGTCAAGGCCCTGCCACT
TCCATGGCGTTCGCGCTTCAGGTGACAAAACGATGAGCCATAGCCGTGCG
ATTTTCCCGTGAGAGACACGACAACCGTTTAAGTTCAGAAGGGGTATGGC
GTAGCTGAACGGCTGTGCGAAAGTTCCACGATCGATGCAATTCGAAATCT
TCCGACGTTCGGGGTTGGGTCGGATTGATCACTCTTGAGAACAGGTGTGC
CTTGGGATTTGATTTTGACATTTTCTCCTCGCGCAGAGCACGAGGCGTAA
GCACGGCTCAATGGTAGAGCCCCGCGAGTGATTCACCCGAAGGAGCGCGC
GAGGCACTTACCGTTGGAGGGCGACGGAGTCCGAGCATTTGAGTTCGTTT
TCGATGCGTACGCATCCGAATGCGTTATGAGGCCCGTGGACAACTTGACC
CGTGGTCGTGGAAGGTAAAGCACCTTCGTGTGGGAGATAAAACATCGCAA
TCCTTGGCTGGCCGTGCCGCTGCTCATTCTGCCTTTGCTGCTGGTCCTCT
CGCTGCTGCTGCTGCTTCTGCTGCTGCTTCTACCTGTATGTTTGTTTTCC
GCCGGCTCATTGTCATTTTGTCAAGTTCGATTCCCGTTCATGCTACCCGA
CGCGAGACTCCCTTTGCCCCCCCGCCGCGGCGCCGTCCGTTCCGCCTGTC
ACGTTATGCTTTGCCCTCGCGCGTCAGCTGGTGGACTCTCTGTTCGGTCC
GGCAAAAGCGGAAGAAATTGCTAAGGCTCTCCTGTTCAAGTAGACACACC
GTTTGCCTGCGATCGGAGGCTGCCACCGGCAATATGGACAGCTGGGCCGC
TACCAATCGCGGCCTGTAGCTGCCGGAACTGCCTTAAGCTACCGTGTAGC
TACTGTGTAGACACACCGTTTGCCTGCGATCGGAGGCTGCCACCGGCAAT
GTGGAGGGCTGGGTCACTACCAATCGCGGCCTGCACCTGCCGGAACTGCC
TTAAGTTAGCGACGACGCTGCCCCGCGGCTGGGCTTTGCGATGTCCCTCC
TTGCTGCGGTGTCTCTTTTCTTTGGTCTCTCGTAGTGAAAGTTCTTTTGT
TTTCGTTTTTGAGTTTGCAGAGCGAATTCTTGAACTCGATTACATAATGC
TGGTGAAAGTGTCTGGAGCTTCGCTGGGTGGTCGGCGTGTGTGGGGGGGG
GCGACCTGCAAAGCTCAAGTCCGCACGATCGCATGAGGCGTGGGGGGATG
CGCGCGCGCCACGGTCGGAATTTTTGCAGACGGTATTATCCTTTTGGGAC
GAGCTTGATTGGCGTGTTGTCTCCTGACAAAATAACATGTCGAGAACAGC
AGCCGACCTGCCGACCGGTCCTTACTTGCTTTGCCGGAGTCAAGACATGA
ACAGATGCGCGGCTGATGCGCGGCGGGGTGCATCCAGGTTTCTCGCGCTT
ATCCTACCCACTGTTGGCTTCGTCAAGGTTGATTGATGTCCTGTAGAAAA
GATTGGCAAAAATAAAAAATATCGGTTTTCGGGCAAATATCGATGGGGTG
ATGGGGACAAGGGTCGCTCACCGTTTCTTGCAAGACCGGAGCGTAGCAAC
ACCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:179838..185441-

>mRNA_P-fluviatile_contig14.2011.1 ID=mRNA_P-fluviatile_contig14.2011.1|Name=mRNA_P-fluviatile_contig14.2011.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1890bp|location=Sequence derived from alignment at P-fluviatile_contig14:179838..185441- (Porterinema fluviatile SAG_2381)
ATGACGATTCTGGCGTCATCGCTCCTTGGGGTCTTGCCCAAAGCTCACGC
TTTTATCGGAGGCAGAGCTTGCGTCTTGCCGAAAACTTCAATCACAGCAG
CCGGGCGGGTTTGTTCCACAGCCACCGCTGCCGCAACGGCCGCTACCGGC
ACGGCCACCGCCGCTACGACCACCTTCGCTCGCCGTACACCCCTCGCACT
CTCGCACTACTGGGTTGGCGGGGTGGCGGTTGCAGTGATTCACAAGCGAG
GTCTCACAGGTACCCCGACGGCGCTGCGGATGTTCGCCTCGGCAGGCGAT
AGTGTCATGGCAGACCCAACAACGGCGGCGGGAGGGGTGAAGCACGTATT
GGTCCCGATGGCCGACGGCTCGGAAGAGATAGAGAGCGTGACCATCATTG
ACACCCTCGTCCGGGCGGGCGCAGCGGTGACCGTGGCAAGTGTGGCGAGT
GATATTGAGATGACGATTCTGGCGTCATCGCTCCTTGGGGTCTTGCCCAA
AGCTCACGCTTTTATCGGAGGCAGAGCTTGCGTCTTGCCGAAAACTTCAA
TCACAGCAGCCGGGCGGGTTTGTTCCACAGCCACCGCTGCCGCAACGGCC
GCTACCGGCACGGCCACCGCCGCTACGACCACCTTCGCTCGCCGTACACC
CCTCGCACTCTCGCACTACTGGGTTGGCGGGGTGGCGGTTGCAGTGATTC
ACAAGCGAGGTCTCACAGGTACCCCGACGGCGCTGCGGATGTTCGCCTCG
GCAGGCGATAGTGTCATGGCAGACCCAACAACGGCGGCGGGAGGGGTGAA
GCACGTATTGGTCCCGATGGCCGACGGCTCGGAAGAGATAGAGAGCGTGA
CCATCATTGACACCCTCGTCCGGGCGGGCGCAGCGGTGACCGTGGCAAGT
GTGGCGAGTGATATTGAGGTGACGTGCTCGCGAGGGGTAAAGATAAAAGC
TGACTGCAAAATCGCCGATTGTGAGCCCAGAGACTGGGATGCCGTCGTAT
GCCCCGGAGGAATGCCGGGCGCCGTGAACCTCAAGGAGAGCGGGACGCTC
GAGACTATTCTAAAGCGACAGGTTCGATTGGAAAAGTCCAGTATGAGGTC
AGTTAGCTGCGCAAAGCTCTCGCTGGCTCTGCGCGCCCTAAGTATCGCCG
AGGGGTGCGCGAGCCTGTGCGGAACGTCGGGTGCCCACAATCTAAGGTTT
TGTGCGCTTTCGGCTCTCAGCCCTACCTCTGCTGATCTACCTATAGCACA
GCAGCTCCGGCGGAAGGGTCCGTTCATTCGGCATCACCGAGAGCTTCTGT
GCGTATCTTGTAGCTTCCCACATCTTGCGCAGTATCGCTCTCGCTCTCGC
TCTGTGTCCCGCTCGTCACGTCATAATCGCGTACACGATCAGGCCTTAAC
ATGAGTGACGTGCTCGCGAGGGGTAAAGATAAAAGCTGACTGCAAAATCG
CCGATTGTGAGCCCAGAGACTGGGATGCCGTCGTATGCCCCGGAGGAATG
CCGGGCGCCGTGAACCTCAAGGAGAGCGGGACGCTCGAGACTATTCTAAA
GCGACAGGTTCGATTGGAAAAGTCCAGTATGAGGTCAGTTAGCTGCGCAA
AGCTCTCGCTGGCTCTGCGCGCCCTAAGTATCGCCGAGGGGTGCGCGAGC
CTGTGCGGAACGTCGGGTGCCCACAATCTAAGGTTTTGTGCGCTTTCGGC
TCTCAGCCCTACCTCTGCTGATCTACCTATAGCACAGCAGCTCCGGCGGA
AGGGTCCGTTCATTCGGCATCACCGAGAGCTTCTGTGCGTATCTTGTAGC
TTCCCACATCTTGCGCAGTATCGCTCTCGCTCTCGCTCTGTGTCCCGCTC
GTCACGTCATAATCGCGTACACGATCAGGCCTTAACATGA
back to top