mRNA_P-fluviatile_contig14.2009.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2009.1
Unique NamemRNA_P-fluviatile_contig14.2009.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:166671..167848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1178
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2009.1prot_P-fluviatile_contig14.2009.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 167025..167630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.4276514-UTR-P-fluviatile_contig14:166670..1670241622815590.4276514-UTR-P-fluviatile_contig14:166670..167024Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 166671..167024 +
1693562364.306656-UTR-P-fluviatile_contig14:166670..1670241693562364.306656-UTR-P-fluviatile_contig14:166670..167024Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 166671..167024 +
1622815590.4494572-UTR-P-fluviatile_contig14:167630..1678481622815590.4494572-UTR-P-fluviatile_contig14:167630..167848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 167631..167848 +
1693562367.803518-UTR-P-fluviatile_contig14:167630..1678481693562367.803518-UTR-P-fluviatile_contig14:167630..167848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 167631..167848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.438752-CDS-P-fluviatile_contig14:167024..1676301622815590.438752-CDS-P-fluviatile_contig14:167024..167630Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 167025..167630 +
1693562364.314596-CDS-P-fluviatile_contig14:167024..1676301693562364.314596-CDS-P-fluviatile_contig14:167024..167630Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 167025..167630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2009.1

>prot_P-fluviatile_contig14.2009.1 ID=prot_P-fluviatile_contig14.2009.1|Name=mRNA_P-fluviatile_contig14.2009.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=202bp
MQIKIKSSTPYNETPRSRRVCSARVDNAPRPPHQPPKYLIRQNLGPPFAA
KLRNQESRRTTSGSSESTVDIPAGLSMFESLLHPHLLRMQIKKRAVQQEA
ANLATQHLRDNIKASGAAPLPCSLKSKHTNLLAQRLHNLRFISAGKPING
PRPETSDGVVRNYHFSIIAPFPSPTPSVHRHSTQASTKSINYFPARVRIE
I*
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mRNA from alignment at P-fluviatile_contig14:166671..167848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2009.1 ID=mRNA_P-fluviatile_contig14.2009.1|Name=mRNA_P-fluviatile_contig14.2009.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1178bp|location=Sequence derived from alignment at P-fluviatile_contig14:166671..167848+ (Porterinema fluviatile SAG_2381)
GAGTATGGATGGTGCGTTGATTGAGATTATTAAATCCATGTCCCGAAGGA
AAACACCCTACCAGGGGCGGAAATCCGAGATGATGAAGTTGGAATATGTT
GGAATACGTTTGTCGGTCATCACCTCCCTTAGAATGCCCAAGAAAAAGAC
AAACTTTTGAGATAAAAATCGATCCAATTCCAATTCCAACTGGAACTCCT
TTTACCACTTAATTTTACCACCAGTTTTAATCTCGTTCGTCTCCCACCAA
CTTTCTAGACAGTTTTTTTTTTTCGTTTTTCTTGTAACAAGGGTTGCGCA
ACAATACTTTCTCTcCCTTCGACTCTGACTCTGCGTACAGAACATGATAC
GTAAATGCAAATAAAAATAAAATCTAGTACTCCGTACAACGAAACACCAC
GAAGTAGGCGGGTATGCAGTGCCAGGGTAGACAATGCGCCGAGGCCACCT
CATCAACCACCCAAATATCTCATTCGTCAGAATCTAGGTCCCCCCTTTGC
TGCAAAACTCAGGAATCAAGAGTCGCGTCGAACGACTTCAGGCAGTTCCG
AAAGTACTGTTGATATTCCTGCTGGACTCTCGATGTTCGAGAGTCTGCTG
CATCCCCATCTTTTGCGTATGCAAATAAAAAAGCGCGCGGTTCAGCAAGA
AGCAGCGAACCTGGCAACACAACACTTGAGGGACAACATTAAAGCCAGTG
GCGCCGCGCCACTTCCTTGTTCACTCAAAAGTAAACACACGAATCTCCTT
GCCCAACGCCTACATAACTTGCGGTTTATTTCAGCGGGAAAACCAATCAA
CGGCCCTCGTCCCGAAACCAGCGACGGCGTCGTTCGAAATTACCACTTTT
CGATCATCGCGCCCTTCCCGTCCCCCACCCCCTCTGTACATAGGCACTCC
ACTCAGGCGTCCACCAAATCCATTAACTATTTTCCAGCGAGAGTGCGCAT
CGAAATTTAGTAAACGGTAAATCAAGCGGCTGGCGGAAACAAAGAAAGCT
AAAGGAGGGATCTCTTCGCTCGAGCAAGCTTGACTCCTTGACTGACGCGA
AAATAGCACCCAGCGTCGAACAAGGCCAAAAGCGTGGTGTGTGTCCTGCG
ACACTGAGAGTGCAAAACTACGGAGGGCAGAATCCCCATAGCCTTGCCAA
TACGGGTGCCTCCGCGACGCTTTGTGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:166671..167848+

>mRNA_P-fluviatile_contig14.2009.1 ID=mRNA_P-fluviatile_contig14.2009.1|Name=mRNA_P-fluviatile_contig14.2009.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1212bp|location=Sequence derived from alignment at P-fluviatile_contig14:166671..167848+ (Porterinema fluviatile SAG_2381)
ATGCAAATAAAAATAAAATCTAGTACTCCGTACAACGAAACACCACGAAG
TAGGCGGGTATGCAGTGCCAGGGTAGACAATGCGCCGAGGCCACCTCATC
AACCACCCAAATATCTCATTCGTCAGAATCTAGGTCCCCCCTTTGCTGCA
AAACTCAGGAATCAAGAGTCGCGTCGAACGACTTCAGGCAGTTCCGAAAG
TACTGTTGATATTCCTGCTGGACTCTCGATGTTCGAGAGTCTGCTGCATC
CCCATCTTTTGCGTATGCAAATAAAAAAGCGCGCGGTTCAGCAAGAAGCA
GCGAACCTGGCAACACAACACTTGAGGGACAACATTAAAGCCAGTGGCGC
CGCGCCACTTCCTTGTTCACTCAAAAGTAAACACACGAATCTCCTTGCCC
AACGCCTACATAACTTGCGGTTTATTTCAGCGGGAAAACCAATCAACGGC
CCTCGTCCCGAAACCAGCGACGGCGTCGTTCGAAATTACCACTTTTCGAT
CATCGCGCCCTTCCCGTCCCCCACCCCCTCTGTACATAGGCACTCCACTC
AGGCGTCCACCAAATCCATTAACTATTTTCCAGCGAGAGTGCGCATCGAA
ATTTAGATGCAAATAAAAATAAAATCTAGTACTCCGTACAACGAAACACC
ACGAAGTAGGCGGGTATGCAGTGCCAGGGTAGACAATGCGCCGAGGCCAC
CTCATCAACCACCCAAATATCTCATTCGTCAGAATCTAGGTCCCCCCTTT
GCTGCAAAACTCAGGAATCAAGAGTCGCGTCGAACGACTTCAGGCAGTTC
CGAAAGTACTGTTGATATTCCTGCTGGACTCTCGATGTTCGAGAGTCTGC
TGCATCCCCATCTTTTGCGTATGCAAATAAAAAAGCGCGCGGTTCAGCAA
GAAGCAGCGAACCTGGCAACACAACACTTGAGGGACAACATTAAAGCCAG
TGGCGCCGCGCCACTTCCTTGTTCACTCAAAAGTAAACACACGAATCTCC
TTGCCCAACGCCTACATAACTTGCGGTTTATTTCAGCGGGAAAACCAATC
AACGGCCCTCGTCCCGAAACCAGCGACGGCGTCGTTCGAAATTACCACTT
TTCGATCATCGCGCCCTTCCCGTCCCCCACCCCCTCTGTACATAGGCACT
CCACTCAGGCGTCCACCAAATCCATTAACTATTTTCCAGCGAGAGTGCGC
ATCGAAATTTAG
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