mRNA_P-fluviatile_contig14.2000.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2000.1
Unique NamemRNA_P-fluviatile_contig14.2000.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig14.2000.1 vs. uniprot
Match: D7FUZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ1_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 1.580e-163
Identity = 294/454 (64.76%), Postives = 342/454 (75.33%), Query Frame = 1
Query:    1 MSRLSLLLTISAVGFSSVESFLLSPRRSTAAWLD---------YRLWNTVIPSGRQGSLRRDE--VCLWQETLALGAAVSQKTDDPSH---RPNQSVRRKTKR-PRKHVPVESGESPSA--GGGVSEG-LADPFVTFVSPMEYAKFDSSAAGRVADASPSQPPPSSLDLAPLPEPSFNDRQRFGRIMDEVLEQEKEEELPAILTKHIDFLLSVDVTSLTNDLIRQEPTIDRVNTIRNAYEFIVSFLESMVESTVDVQKENQTLLRREQQEMLIIEAAKTSPEVFETRMKKLQDRFTFEFVKYLDAEVERLEKVEKELAERKQKTATTIADKQEPPLSMAIGGNEVLNVIRIVRTRVCAQVDLMMGEDVAVLTRMLSYNDRFMMRAALRTVMRDKTPKEITAFGVLVSSTLRDVVALGSDVDPVLRSKLADMADDIAAVGREVEERQKDQAEREA 1308
            MS+L L+L +SAVGF S+ESFL++P  S AAWLD          R  + + PS R    R++                    T+ PS    RP QSVRRKTKR PR+HVPV+  +SPS+  GG +  G + DPFV  ++P EYA  D+S      D++P  P P+     PLPEP+  DRQRF RIM+EVLE+EKEEELPAIL++H+DFLLSVDVT+LTNDLIRQEPT+ RVNT+RNAYEFIVSFLESMVESTVDVQKENQTLLR      LIIEAAKTSPEVF+ RMK LQDRFTFEFVKYLD EVERLEKVEK++AE+K+K     A+K + P  M   GNEVLNVIRIVRTRVCAQ+DLMMGEDVAVLTRMLSY+DRFMMRAALRTV+RDK+PKEI AFG LVS TL DVVALGS VDPVLRSKL+DM++DI AVGR+VEERQKD+ EREA
Sbjct:   46 MSQLLLVLVLSAVGFPSMESFLITPTTS-AAWLDPRPASHQQRRRSSSAIFPSPRSRCSRKERPTXXXXXXXXXXXXXXXDATEGPSQQQQRPKQSVRRKTKRRPRQHVPVDDVDSPSSEVGGEIGAGFVGDPFVDLIAPTEYAASDASGDSS-RDSTPLPPSPAGGATPPLPEPTTRDRQRFERIMEEVLEEEKEEELPAILSRHVDFLLSVDVTALTNDLIRQEPTLTRVNTLRNAYEFIVSFLESMVESTVDVQKENQTLLR------LIIEAAKTSPEVFDKRMKNLQDRFTFEFVKYLDGEVERLEKVEKDMAEKKKKRKVP-AEKDDMP--MGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAALRTVLRDKSPKEIAAFGALVSKTLEDVVALGSGVDPVLRSKLSDMSEDITAVGRDVEERQKDKREREA 488          
BLAST of mRNA_P-fluviatile_contig14.2000.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE)

HSP 1 Score: 475 bits (1222), Expect = 9.160e-156
Identity = 288/454 (63.44%), Postives = 339/454 (74.67%), Query Frame = 1
Query:    1 MSRLSLLLTISAVGFSSVESFLLSPRRSTAAWLDYR---------LWNTVIPSGRQGSLRRDEVCLWQETLALGAA-----VSQKTDDPSHRPNQSVRRKTKR-PRKHVPVESGESPSA--GGGVSEG-LADPFVTFVSPMEYAKFDSSAAGRVADASPSQPPPSSLDLAPLPEPSFNDRQRFGRIMDEVLEQEKEEELPAILTKHIDFLLSVDVTSLTNDLIRQEPTIDRVNTIRNAYEFIVSFLESMVESTVDVQKENQTLLRREQQEMLIIEAAKTSPEVFETRMKKLQDRFTFEFVKYLDAEVERLEKVEKELAERKQKTATTIADKQEPPLSMAIGGNEVLNVIRIVRTRVCAQVDLMMGEDVAVLTRMLSYNDRFMMRAALRTVMRDKTPKEITAFGVLVSSTLRDVVALGSDVDPVLRSKLADMADDIAAVGREVEERQKDQAEREA 1308
            MS+L L++ +SAVGF S+ESFLL+P  ST+ WLD R           + V  S      R +    ++ T            ++ +     RP QSVRRKTKR PR+HVPV+  +SPS+  GG V  G + DPFV  ++P EYA  D S      D++P  P P+     PLPEP+  DRQRF RI++EVLE+EKEEELPAIL++H+DFLLSVDVT+LTNDLIRQEPT+ RVNT+RNAYEFIVSFLESMVESTVDVQKENQTLLR      LIIEAAKTSPEVF+ RMK LQ+RFTFEFVKYLD EVERLE+ EK+LAE+K+K     A+K + P  M   GNEVLNVIRIVRTRVCAQ+DLMMGEDVAVLTRMLSY+DRFMMRAALRTV+RDK+PKEI AFG LVS TL DVVALGS VDPVLRSKL+DM++DI AVGR+VEERQKD+ EREA
Sbjct:  387 MSQLLLVMILSAVGFPSLESFLLTPTTSTS-WLDTRPASHQQRRRSRSAVATSPHSRCSRNERPACFRATTPXXXXXXXXDATEGSSQQQQRPKQSVRRKTKRRPRQHVPVDDVDSPSSEVGGEVGAGFVGDPFVDLIAPTEYAASDVSGDSS-RDSTPLPPSPAGTATPPLPEPTIRDRQRFERIVEEVLEEEKEEELPAILSRHVDFLLSVDVTALTNDLIRQEPTLTRVNTLRNAYEFIVSFLESMVESTVDVQKENQTLLR------LIIEAAKTSPEVFDKRMKNLQERFTFEFVKYLDGEVERLEQAEKDLAEKKRKRKVP-AEKDDMP--MGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAALRTVLRDKSPKEIAAFGALVSKTLEDVVALGSGVDPVLRSKLSDMSEDITAVGRDVEERQKDKREREA 829          
BLAST of mRNA_P-fluviatile_contig14.2000.1 vs. uniprot
Match: A0A836CI99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI99_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.630e-14
Identity = 57/197 (28.93%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  499 RIMDEVLEQEKEEELPAILTKHIDFLLSVDVTSLTNDLIRQEPTIDRVNTIRNAYEFIVSFLESMVESTVDVQKENQTLLRREQQEMLIIEAAKTSPEVFETRMKKLQD--RFTFEFVKYLDAEVERLEKVEKELAERKQKTATTIADKQEPPLSMAIGGNEVLNVIRIVRTRVCAQVDLMMGEDVAVLTRMLSYND 1083
            R+MD++L+ E+EE+LP I++ H+  LL+ D ++L  ++  +  +    +T+ NAY+F++SF+E        +Q  NQ LL        ++ AA+     FE  ++  ++  R     + YLD E  RL                            A GG+  L  + ++R RV A++D  MGE+V+VL R+L ++D
Sbjct:    4 RVMDDLLDAEEEEQLPGIVSPHVYALLASDCSALFEEMRAEAASATARDTLANAYDFLLSFMEEFTAHAAAIQARNQKLLAE------LLGAARRGALAFEEAIEAAREASRLDVTLLHYLDGEAARLR--------------------------AAAGGDAALGAVGVIRARVAAEIDRTMGEEVSVLNRLLGFDD 168          
BLAST of mRNA_P-fluviatile_contig14.2000.1 vs. uniprot
Match: A0A7S1XRM3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRM3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.880e-5
Identity = 58/216 (26.85%), Postives = 103/216 (47.69%), Query Frame = 1
Query:  502 IMDEVLEQEKEEELPAILTKHIDFLLSVDVTSLTNDLIRQEPTI--DRVNTIRNAYEFIVSFLESMVESTVDVQKENQTLLRREQQEMLIIEAAKTSPEVFETRMKKLQDRFTFEFVKYLDAEVERLEKVEKELAERKQKTATTIADKQEPPLSMAIGGNEVLNVIRIVRTRVCAQVDLMMGEDVAVLTRMLSY-NDRFMMRAALRTVMRDKTPKE 1140
            IM  +LE + EE++ A++ +++ FLL               P +  D ++ +  A   I+ FLE  V +T  V++  Q ++R       +IEAAK   + F  ++        F+F++YLD E+ER+ K+E+  +           D+  P +++          +R++R RV A +D   G   A LTR+L+  +D    RA L +   D + +E
Sbjct:   81 IMQAMLEAD-EEQILAVMGENVRFLLDPKTPERFKKARSYYPHVADDELDDVFTA---IIDFLEEFVNTTAGVERSYQEMVRA------LIEAAKEGDDAFNAKINSFGAALNFQFLQYLDGEMERMSKIEEAAS------GVPTTDENAPNIAL----------LRMLRVRVNATLDEAFGPYFAELTRILAIEDDAVRQRAFLSSSTLDGSAEE 270          
BLAST of mRNA_P-fluviatile_contig14.2000.1 vs. uniprot
Match: L1K220_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K220_GUITC)

HSP 1 Score: 55.5 bits (132), Expect = 9.600e-5
Identity = 41/149 (27.52%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  472 SFNDRQRFGRIMDEVLEQEKEEELPAILTKHIDFLLSVDVTSLTNDLIRQEPTIDRVNTIRN--AYEFIVSFLESMVESTVDVQKENQTLLRREQQEMLIIEAAKTSPEVFETRMKKL----QDRFTFEFVKYLDAEVERLEKVEKELA 900
            S +D  +F  I+ E+ +   E E P I+  +++FLL  D+  L+N +  +E  +D  +  R+  +++ ++ FLE  V     +  +N+ LL+       I++A+    +  + +M+ +    + R+T EF++YLDAE+ER++ V ++ A
Sbjct:   20 SQSDLTKFRDILHEI-QSANETEYPRIVGSNVEFLLRTDLERLSNTIQSEE--MDETSRARHEQSFQLVLDFLEVFVNEIKQIWDDNRALLKE------ILQASSKGMQALDKKMEDMIAGREPRYTPEFLRYLDAEIERMKDVVQDAA 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUZ1_ECTSI1.580e-16364.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUY2_9PHAE9.160e-15663.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CI99_9STRA3.630e-1428.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XRM3_9STRA2.880e-526.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1K220_GUITC9.600e-527.52Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:95553..98987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.4
Seed ortholog evalue3.5e-135
Seed eggNOG ortholog2880.D7FUZ1
EggNOG OGs2E654@1,2SCWG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008730.1
Exons6
Model size1663
Cds size1323
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.9355297-CDS-P-fluviatile_contig14:95552..957351622815592.9355297-CDS-P-fluviatile_contig14:95552..95735Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 95553..95735 +
1693562369.1934588-CDS-P-fluviatile_contig14:95552..957351693562369.1934588-CDS-P-fluviatile_contig14:95552..95735Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 95553..95735 +
1622815592.951811-CDS-P-fluviatile_contig14:96160..965941622815592.951811-CDS-P-fluviatile_contig14:96160..96594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 96161..96594 +
1693562369.203314-CDS-P-fluviatile_contig14:96160..965941693562369.203314-CDS-P-fluviatile_contig14:96160..96594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 96161..96594 +
1622815592.9658816-CDS-P-fluviatile_contig14:96798..969391622815592.9658816-CDS-P-fluviatile_contig14:96798..96939Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 96799..96939 +
1693562369.2115283-CDS-P-fluviatile_contig14:96798..969391693562369.2115283-CDS-P-fluviatile_contig14:96798..96939Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 96799..96939 +
1622815592.9787102-CDS-P-fluviatile_contig14:97254..973361622815592.9787102-CDS-P-fluviatile_contig14:97254..97336Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 97255..97336 +
1693562369.2216334-CDS-P-fluviatile_contig14:97254..973361693562369.2216334-CDS-P-fluviatile_contig14:97254..97336Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 97255..97336 +
1622815592.995141-CDS-P-fluviatile_contig14:97586..978601622815592.995141-CDS-P-fluviatile_contig14:97586..97860Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 97587..97860 +
1693562369.2312548-CDS-P-fluviatile_contig14:97586..978601693562369.2312548-CDS-P-fluviatile_contig14:97586..97860Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 97587..97860 +
1622815593.0081377-CDS-P-fluviatile_contig14:98438..986471622815593.0081377-CDS-P-fluviatile_contig14:98438..98647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 98439..98647 +
1693562369.2411468-CDS-P-fluviatile_contig14:98438..986471693562369.2411468-CDS-P-fluviatile_contig14:98438..98647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 98439..98647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.0181553-UTR-P-fluviatile_contig14:98647..989871622815593.0181553-UTR-P-fluviatile_contig14:98647..98987Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 98648..98987 +
1693562369.2510943-UTR-P-fluviatile_contig14:98647..989871693562369.2510943-UTR-P-fluviatile_contig14:98647..98987Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 98648..98987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2000.1prot_P-fluviatile_contig14.2000.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 95553..98647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2000.1

>prot_P-fluviatile_contig14.2000.1 ID=prot_P-fluviatile_contig14.2000.1|Name=mRNA_P-fluviatile_contig14.2000.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=441bp
MSRLSLLLTISAVGFSSVESFLLSPRRSTAAWLDYRLWNTVIPSGRQGSL
RRDEVCLWQETLALGAAVSQKTDDPSHRPNQSVRRKTKRPRKHVPVESGE
SPSAGGGVSEGLADPFVTFVSPMEYAKFDSSAAGRVADASPSQPPPSSLD
LAPLPEPSFNDRQRFGRIMDEVLEQEKEEELPAILTKHIDFLLSVDVTSL
TNDLIRQEPTIDRVNTIRNAYEFIVSFLESMVESTVDVQKENQTLLRREQ
QEMLIIEAAKTSPEVFETRMKKLQDRFTFEFVKYLDAEVERLEKVEKELA
ERKQKTATTIADKQEPPLSMAIGGNEVLNVIRIVRTRVCAQVDLMMGEDV
AVLTRMLSYNDRFMMRAALRTVMRDKTPKEITAFGVLVSSTLRDVVALGS
DVDPVLRSKLADMADDIAAVGREVEERQKDQAEREAEEQA*
back to top

mRNA from alignment at P-fluviatile_contig14:95553..98987+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2000.1 ID=mRNA_P-fluviatile_contig14.2000.1|Name=mRNA_P-fluviatile_contig14.2000.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3435bp|location=Sequence derived from alignment at P-fluviatile_contig14:95553..98987+ (Porterinema fluviatile SAG_2381)
ATGTCTCGGCTCTCCCTCCTGCTGACAATCTCGGCCGTAGGCTTCTCTTC GGTGGAGTCGTTCCTCCTTTCACCAAGAAGGAGCACAGCAGCCTGGTTGG ATTACCGGCTCTGGAACACCGTAATCCCATCAGGACGGCAAGGTAGCCTC CGGCGAGACGAGGTGTGTTTGTGGCAGGAGACAGTCAGCACACAGCAAAA TGAAGTTATTTCAAAGCATGGATTGTTCAACAGCAGGTGAAAGAACGAGC CTCTCCATGGAGCTTGTGCGCTTGTCGGCATGTTTCTTAACATGTGTCGA CCAGCCTAGATCTAGGCCCTGCAAAAAGCCATACTCCGGGTTCAAGTGCG ATGCGCGGTTTCTCGAGGGCTGCGAACAAAGGATCGCACCACCTCTGTTG GTCGATTACGTGCATTATTGCACACTTCCATCTACGTTTGGTTTGCAAGA CATGCACTTTACGGAAAGGTATTTGGGCACGAGAAATTGCATCACACCTG GACTAGTCTGTGAAAGCCAACGGGGCCTCCCCCCGCGCTGCCCCTCTCAC TCGTCGCTTTCCAATTCTCTCCCCGGTGAATATGTTCCCGCTCATCTCCA CCCCATAGCTAGCATTGGGAGCCGCCGTCTCTCAGAAAACGGACGACCCC AGCCATCGACCAAACCAGTCGGTGCGGAGGAAAACGAAACGGCCAAGGAA GCACGTCCCGGTAGAAAGCGGCGAGTCTCCATCCGCGGGCGGCGGCGTCA GCGAGGGACTCGCTGATCCTTTCGTGACTTTCGTATCGCCGATGGAGTAC GCCAAGTTCGATTCCTCGGCGGCCGGTAGGGTGGCTGATGCGTCGCCCTC GCAGCCACCGCCATCGTCGTTGGATTTGGCGCCGTTGCCGGAGCCGAGCT TCAATGATCGGCAGAGATTCGGGAGGATCATGGACGAGGTCCTGGAACAG GAGAAAGAGGAGGAGCTTCCCGCTATTCTCACCAAACACATCGACTTCCT TCTATCTGTCGACGTCACCAGCCTGACGAATGATCTCATAAGGTGACACG ACCACCACAAGCTTGGGAGTGTTGGCTGAAGAACGCATTAGGTGATGGAG AGAGGCCCAAGATCTTCAACAACCCCTCGGACCGCGTAAAGATATCGGTG TTTGTCGCTTGTTGAGTAGGTTTTCGGCCACGTTTTTTATTGTGTTCTAT GACTTCGCTTACCCCGCTACTTGGACCGCTACTTGCGTGTGTACAGGCAA GAGCCTACCATCGATCGGGTCAACACAATTCGAAACGCCTACGAGTTCAT CGTCTCCTTCCTGGAGAGCATGGTCGAGTCCACGGTTGACGTGCAGAAGG AGAACCAAACTCTACTCAGGCGAGAGCAACAGGAAATGTAAACAGGGGAG GTCGCAGTAACACGGTTTTCGGATAGACTTGCTGCTGAAGCAGAAGTGTC GCTTTTCAGCACACAAAGTGTAGCGACTTCTTTTCATGGCGAGGGTGATC GACATGCGAAACTAAACCAGCACGTGTCGGTCAGTCTTGAGATTTCCAGT TGTTCATGAGGTCATACTTCTGGAGGTTGAGCTCTCGGGAGGGGCGCCTC GCATGAGAGGCAAAGTCGGTGCACTGTCGCATTCGGGCGCGGCGCGGAAA GTCCTTCAGACCACCTTCAGGCACGCGCAATCGTAACCCCGCGATTCTTC AGGCTCATCATCGAAGCGGCCAAGACAAGCCCCGAAGTTTTCGAAACGAG GATGAAGAAGCTGCAGGACCGCTTCACATTCGAGGTGGGGGAAAAGAAGG GAAAAGGACGGAAAAGAAGGCACGAGCGTCCTGCTGTGCATGTGATGATG CGTGCACACGTGACATTATTGCTGCCTGCGAGATGTTGTGCCCCCACCCC CTGCTGCTCAATTTTCGGGTAAGCACCCAACCAGCAGACGGGTAATGCCT CCCCCCTCCCTCCCTCTGCATCCCTCCCCCCCGCCCCCCCGCCTCTCTTT TCCTGCGTCCCTCCGGTCTCACGTGCCCAAACAGTTCGTGAAGTACTTGG ACGCGGAGGTGGAGAGACTGGAGAAGGTCGAGAAAGAGCTCGCGGAGCGA AAGCAGAAGACGGCGACGACGATCGCCGACAAGCAGGAGCCACCGTTGTC GATGGCGATCGGGGGCAACGAGGTCCTGAACGTGATCAGGATCGTCCGAA CGAGGGTGTGCGCGCAGGTGGACCTGATGATGGGCGAGGACGTGGCCGTG CTCACGCGGATGCTCAGCTACAACGACCGGTTCATGATGAGAGCAGCGCT CAGGACCGGTGAGAGTAGAGCGAGGGAGCGAGGCATGCCGAGTGTCGACG AGATCATTGCTTTGGCATTTTTTTTTTTGTTAAGGTTCGGTGGGCACGCA GGCTGGGTATACGCCTGACGAATAATGCCCATGGAGGAGTGGCGGCCGGG CCGAGTACGCAGCAAGCAAGCGTCGAAGGGAAGAGGTCAGTAAATCACAC GGCCATTTCGGAACGGGGGTACGACAAGCCGGTGGGTGGCGATCACCCAG TCAGCGCCATAAGCGAATACCATTGAGCTTTTGAAAATTGGTGTCATTTC TCGGCGCCGCACGCGAATGGCTGGTAGTTGAGTGGGGCAGTATGTCGAGG GTTGCTTTGACGTGGAGGTACCGCTGAGCCTCATCTTGTCAGAAACATCG CCGCTCAAGAGCTGACCATTACATTACGGGAGAGACGAGGGCGATGGGTC TCGAATGAGTTGATGTCAATGCGACGAAAGCCCTCTTGGTAACGCACCCG CGTGCCCCCCCTTCCTCCCTCCCCGCCCCCTCGCCCCGGCCCCTGCGCGA CACCACCGCCGCTTGGTCGTCAAATCGCTCTGGTAGTGATGCGAGACAAA ACACCCAAAGAAATCACCGCTTTCGGCGTGCTGGTGTCGAGCACCCTGCG GGACGTGGTCGCGCTCGGGAGCGACGTAGACCCCGTCCTGCGGTCCAAGC TGGCCGACATGGCAGACGACATCGCGGCGGTGGGCAGGGAAGTTGAGGAG CGGCAAAAGGATCAGGCAGAACGAGAGGCGGAAGAACAAGCGTAGTGCGT GTGTGTGCCGCGTGTGGTTGTTTTTCGGATTTTGGTGTTTCCTTTGTAGA ACCTGAGTGTTCATCATCCCTACGCGTCAGTTGCGAAGCGTGTCAAGTTG CCGACGGGCAGACGTCTGAACTGGAAATTTAGTGTACCTTCTCCTCGAGG ATGGCTAAACGATGGCCCAGCGATTTGGTGGTTGAGCGGGTTCACGTAGC CCGATGCGTGATAACCGTGGGCATGGAGCCAGATGGACCCTTTATTACCC CGAATTGGCTGTGTCACTGTCCGTCCAACAATGCTGCGACGGCTTTCCGA CTGTCGGGATATTTCAAGAATGTTTTATTCGACAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:95553..98987+

>mRNA_P-fluviatile_contig14.2000.1 ID=mRNA_P-fluviatile_contig14.2000.1|Name=mRNA_P-fluviatile_contig14.2000.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2646bp|location=Sequence derived from alignment at P-fluviatile_contig14:95553..98987+ (Porterinema fluviatile SAG_2381)
ATGTCTCGGCTCTCCCTCCTGCTGACAATCTCGGCCGTAGGCTTCTCTTC
GGTGGAGTCGTTCCTCCTTTCACCAAGAAGGAGCACAGCAGCCTGGTTGG
ATTACCGGCTCTGGAACACCGTAATCCCATCAGGACGGCAAGGTAGCCTC
CGGCGAGACGAGGTGTGTTTGTGGCAGGAGACAATGTCTCGGCTCTCCCT
CCTGCTGACAATCTCGGCCGTAGGCTTCTCTTCGGTGGAGTCGTTCCTCC
TTTCACCAAGAAGGAGCACAGCAGCCTGGTTGGATTACCGGCTCTGGAAC
ACCGTAATCCCATCAGGACGGCAAGGTAGCCTCCGGCGAGACGAGGTGTG
TTTGTGGCAGGAGACACTAGCATTGGGAGCCGCCGTCTCTCAGAAAACGG
ACGACCCCAGCCATCGACCAAACCAGTCGGTGCGGAGGAAAACGAAACGG
CCAAGGAAGCACGTCCCGGTAGAAAGCGGCGAGTCTCCATCCGCGGGCGG
CGGCGTCAGCGAGGGACTCGCTGATCCTTTCGTGACTTTCGTATCGCCGA
TGGAGTACGCCAAGTTCGATTCCTCGGCGGCCGGTAGGGTGGCTGATGCG
TCGCCCTCGCAGCCACCGCCATCGTCGTTGGATTTGGCGCCGTTGCCGGA
GCCGAGCTTCAATGATCGGCAGAGATTCGGGAGGATCATGGACGAGGTCC
TGGAACAGGAGAAAGAGGAGGAGCTTCCCGCTATTCTCACCAAACACATC
GACTTCCTTCTATCTGTCGACGTCACCAGCCTGACGAATGATCTCATAAG
CTAGCATTGGGAGCCGCCGTCTCTCAGAAAACGGACGACCCCAGCCATCG
ACCAAACCAGTCGGTGCGGAGGAAAACGAAACGGCCAAGGAAGCACGTCC
CGGTAGAAAGCGGCGAGTCTCCATCCGCGGGCGGCGGCGTCAGCGAGGGA
CTCGCTGATCCTTTCGTGACTTTCGTATCGCCGATGGAGTACGCCAAGTT
CGATTCCTCGGCGGCCGGTAGGGTGGCTGATGCGTCGCCCTCGCAGCCAC
CGCCATCGTCGTTGGATTTGGCGCCGTTGCCGGAGCCGAGCTTCAATGAT
CGGCAGAGATTCGGGAGGATCATGGACGAGGTCCTGGAACAGGAGAAAGA
GGAGGAGCTTCCCGCTATTCTCACCAAACACATCGACTTCCTTCTATCTG
TCGACGTCACCAGCCTGACGAATGATCTCATAAGGCAAGAGCCTACCATC
GATCGGGTCAACACAATTCGAAACGCCTACGAGTTCATCGTCTCCTTCCT
GGAGAGCATGGTCGAGTCCACGGTTGACGTGCAGAAGGAGAACCAAACTC
TACTCAGGCGAGAGCAACAGGAAATGCAAGAGCCTACCATCGATCGGGTC
AACACAATTCGAAACGCCTACGAGTTCATCGTCTCCTTCCTGGAGAGCAT
GGTCGAGTCCACGGTTGACGTGCAGAAGGAGAACCAAACTCTACTCAGGC
GAGAGCAACAGGAAATGCTCATCATCGAAGCGGCCAAGACAAGCCCCGAA
GTTTTCGAAACGAGGATGAAGAAGCTGCAGGACCGCTTCACATTCGAGGC
TCATCATCGAAGCGGCCAAGACAAGCCCCGAAGTTTTCGAAACGAGGATG
AAGAAGCTGCAGGACCGCTTCACATTCGAGTTCGTGAAGTACTTGGACGC
GGAGGTGGAGAGACTGGAGAAGGTCGAGAAAGAGCTCGCGGAGCGAAAGC
AGAAGACGGCGACGACGATCGCCGACAAGCAGGAGCCACCGTTGTCGATG
GCGATCGGGGGCAACGAGGTCCTGAACGTGATCAGGATCGTCCGAACGAG
GGTGTGCGCGCAGGTGGACCTGATGATGGGCGAGGACGTGGCCGTGCTCA
CGCGGATGCTCAGCTACAACGACCGGTTCATGATGAGAGCAGCGCTCAGG
ACCGTTCGTGAAGTACTTGGACGCGGAGGTGGAGAGACTGGAGAAGGTCG
AGAAAGAGCTCGCGGAGCGAAAGCAGAAGACGGCGACGACGATCGCCGAC
AAGCAGGAGCCACCGTTGTCGATGGCGATCGGGGGCAACGAGGTCCTGAA
CGTGATCAGGATCGTCCGAACGAGGGTGTGCGCGCAGGTGGACCTGATGA
TGGGCGAGGACGTGGCCGTGCTCACGCGGATGCTCAGCTACAACGACCGG
TTCATGATGAGAGCAGCGCTCAGGACCGTGATGCGAGACAAAACACCCAA
AGAAATCACCGCTTTCGGCGTGCTGGTGTCGAGCACCCTGCGGGACGTGG
TCGCGCTCGGGAGCGACGTAGACCCCGTCCTGCGGTCCAAGCTGGCCGAC
ATGGCAGACGACATCGCGGCGGTGGGCAGGGAAGTTGAGGAGCGGCAAAA
GGATCAGGCAGAACGAGAGGCGGAAGAACAAGCGTAGTGATGCGAGACAA
AACACCCAAAGAAATCACCGCTTTCGGCGTGCTGGTGTCGAGCACCCTGC
GGGACGTGGTCGCGCTCGGGAGCGACGTAGACCCCGTCCTGCGGTCCAAG
CTGGCCGACATGGCAGACGACATCGCGGCGGTGGGCAGGGAAGTTGAGGA
GCGGCAAAAGGATCAGGCAGAACGAGAGGCGGAAGAACAAGCGTAG
back to top