mRNA_P-fluviatile_contig14.1995.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.1995.1
Unique NamemRNA_P-fluviatile_contig14.1995.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.1995.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.320e-64
Identity = 137/317 (43.22%), Postives = 189/317 (59.62%), Query Frame = 1 
Query:   94 MDDYCNKQLLKTIENKLDECLAN---GT--WRNGVKEEGVQDLIDFAEDLYDPFEAETISPIPQGSFGCFGA-DDVDPIAAALLNEAAALHGGGLGTPMKTKGNGACLMNGLVSAALNMKYSDEWPGDGPALALRAAAVRTALVKFKTFLSPDGYLQEYYPGQLFNYGDGERVKNLTGGLECPIDMPVEMARLHFLCALRNITGPYSTCEGACLPWVAEVFGLKVWVVHPGATAAYVGAARNLRAWAPLSCKQMGREEVAKIPTVYLSNSLSRVVGDGFKEFSTVQEFHAL--RDDRR-YTHFVVVVNTLSADAFEQ 1017
            MDD  NK +L TIE+ +D   A    GT  W+NGV    VQ L+     + DPF    ++PIP+   GCF   +D+D +A+  L  AA   GGG+G P+  +G GAC    L S ALN + S      G ALALR  A+R AL+K + FLS DGYL EY  G LF+  + + V  L G +  P++M  ++ARL++LCA+R+  GP+   + A LPW AEV GLKV V HP A+ + VG   N + W PLS  + G   +A++P V+LS+SLSR   DG   F+++Q    L  R DRR ++HFV++VNT+S  A E+
Sbjct:    1 MDDR-NKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCST----GGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRV-WPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKYWMPLSSLRSGPHALAQMPAVHLSHSLSR---DG-TPFTSIQGLGRLLGRGDRREFSHFVLLVNTISVGAIEK 307
[Close]
BLAST of mRNA_P-fluviatile_contig14.1995.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.850e-42
Identity = 96/235 (40.85%), Postives = 131/235 (55.74%), Query Frame = 1 
Query:  118 LLKTIENKLDECLANGT----WRNGVKEEGVQDLIDFAEDLYDPFEAETISPIPQGSFGCFGA-DDVDPIAAALLNEAAALHGGGLGTPMKTKGNGACLMNGLVSAALNMKYSDEWPGDGPALALRAAAVRTALVKFKTFLSPDGYLQEYYPGQLFNYGDGERVKNLTGGLECPIDMPVEMARLHFLCALRNITGPYSTCEGACLPWVAEVFGLKVWVVHPGATAAYVGAARNLR 807
            +L  I++ +D+  A  +    W  GV E  V+ L+  A  L DPF    I+PI QG  GCF   +D D +A+  L  AA   GG +G P+   G GAC+   L S AL+ + S      G ALALR AA+R AL+K   FLS DGYL EY    LF+  + + V  L G  E   ++  ++AR+++LCA+RN  GP+   + A +PW AEV GLKV V HP A+ + VG   N R
Sbjct:    1 MLARIKDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCST----GGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGR-EWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNKR 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT31_9PHAE1.320e-6443.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G8_ECTSI2.850e-4240.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:49578..51961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1284
Cds size1281
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.1995.1prot_P-fluviatile_contig14.1995.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 49580..51961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.2240403-CDS-P-fluviatile_contig14:49579..498431622815592.2240403-CDS-P-fluviatile_contig14:49579..49843Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 49580..49843 -
1693562368.6876867-CDS-P-fluviatile_contig14:49579..498431693562368.6876867-CDS-P-fluviatile_contig14:49579..49843Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 49580..49843 -
1622815592.235972-CDS-P-fluviatile_contig14:50446..506971622815592.235972-CDS-P-fluviatile_contig14:50446..50697Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 50447..50697 -
1693562368.6970887-CDS-P-fluviatile_contig14:50446..506971693562368.6970887-CDS-P-fluviatile_contig14:50446..50697Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 50447..50697 -
1622815592.2477412-CDS-P-fluviatile_contig14:50846..513421622815592.2477412-CDS-P-fluviatile_contig14:50846..51342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 50847..51342 -
1693562368.711376-CDS-P-fluviatile_contig14:50846..513421693562368.711376-CDS-P-fluviatile_contig14:50846..51342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 50847..51342 -
1622815592.262836-CDS-P-fluviatile_contig14:51691..519611622815592.262836-CDS-P-fluviatile_contig14:51691..51961Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 51692..51961 -
1693562368.719116-CDS-P-fluviatile_contig14:51691..519611693562368.719116-CDS-P-fluviatile_contig14:51691..51961Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 51692..51961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.1995.1

>prot_P-fluviatile_contig14.1995.1 ID=prot_P-fluviatile_contig14.1995.1|Name=mRNA_P-fluviatile_contig14.1995.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=427bp
SGGCGGGRRNRGRRYRGQHGANRGRGESQPYMDDYCNKQLLKTIENKLDE
CLANGTWRNGVKEEGVQDLIDFAEDLYDPFEAETISPIPQGSFGCFGADD
VDPIAAALLNEAAALHGGGLGTPMKTKGNGACLMNGLVSAALNMKYSDEW
PGDGPALALRAAAVRTALVKFKTFLSPDGYLQEYYPGQLFNYGDGERVKN
LTGGLECPIDMPVEMARLHFLCALRNITGPYSTCEGACLPWVAEVFGLKV
WVVHPGATAAYVGAARNLRAWAPLSCKQMGREEVAKIPTVYLSNSLSRVV
GDGFKEFSTVQEFHALRDDRRYTHFVVVVNTLSADAFEQSILKEAKESDA
PVCRRGERGKEKARKQAAEETATQERAHSAAAAQAERLRAAEEAAAQDRA
RAAAAAQAERLRAAEEAAAQDRARAAA
back to top

mRNA from alignment at P-fluviatile_contig14:49578..51961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.1995.1 ID=mRNA_P-fluviatile_contig14.1995.1|Name=mRNA_P-fluviatile_contig14.1995.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2384bp|location=Sequence derived from alignment at P-fluviatile_contig14:49578..51961- (Porterinema fluviatile SAG_2381)
AGCGGTGGGTGCGGTGGTGGGCGCCGCAACCGTGGGCGCCGCTACCGCGG
GCAACACGGGGCTAATAGAGGTCGGGGTGAGAGCCAGCCATACATGGACG
ACTACTGCAACAAGCAGCTGCTGAAAACCATCGAGAACAAGCTCGACGAG
TGTTTGGCGAATGGCACGTGGAGAAATGGCGTCAAGGAGGAGGGCGTTCA
AGACCTGATCGACTTCGCCGAGGATTTGTACGACCCGTTCGAAGCAGAGA
CCATCAGCCCTATTCCACAGGTGAACGAAATAGTGTTTGTCACGTGTTGC
CAGAACACACCGTGGGAATCCTGAAAAAGCTGTGTTTAGGAAAAGAAATG
ATCCCCCCTAGCGTATCCATACAGCGCCTACCGAAAGTAGAGTCTTGTTG
ACATGGACGGATGTCTACATCCGACTTGGAGGGTTGAAGACTTTAATCTG
GTTTCCCTCTTTCTCCAGGGGTAGTAGGTGGTGCCATTTCTAGCTGCCGC
ATGTTTCCCACAAGTTCCACATAGAAAGTATTCTCTCCTTTTGGCAAAAC
CTAATCCAAAGAATTTGACCGATATCCGAACGGTAACGCAGCCTCCTTGT
TCTTGTCGCTGACTGCCAGGGGAGCTTCGGTTGTTTCGGCGCCGACGATG
TCGACCCCATCGCTGCTGCTCTGTTGAACGAGGCTGCAGCACTACACGGT
GGAGGGTTGGGAACACCTATGAAAACCAAGGGGAACGGCGCGTGCTTGAT
GAACGGATTAGTATCGGCAGCACTCAACATGAAGTATTCGGATGAGTGGC
CGGGAGATGGACCCGCGCTTGCTCTTCGTGCCGCTGCTGTTCGAACCGCC
CTCGTGAAGTTTAAGACTTTTTTGAGCCCTGACGGATACCTTCAGGAGTA
TTATCCTGGGCAGCTGTTCAATTACGGCGATGGAGAGCGGGTGAAAAACC
TCACGGGCGGGCTGGAGTGTCCAATAGATATGCCGGTCGAAATGGCGCGG
CTGCACTTCCTCTGCGCCCTCAGGAACATCACTGGGCCGTACAGCACTTG
CGAAGGGGCGTGCTTGCCGTGGGTTGCCGAGGTTTTCGGCCTCAAAGTTT
GGGTCGTTCACCCAGGTGCTTTTTCAAGTAGTACCATGTAGTTGTTTTAG
CGATAGGTGACAAAATGCTTGTCGGCGGTCGTCGCAAATGGAAGGGCTCT
ACTGACTTCATGTTGAGTTACCTACAGTGCGGATGACTTCCTCTCGTATT
TCCCTGCGGCGCAGGAGCAACAGCGGCGTACGTGGGCGCTGCGCGGAATT
TGCGGGCGTGGGCGCCGTTGTCGTGCAAGCAGATGGGCCGGGAAGAGGTG
GCGAAAATACCAACGGTTTACTTGTCCAACTCTCTCTCCCGTGTAGTCGG
GGATGGATTCAAGGAGTTCAGCACGGTACAAGAGTTCCACGCCTTGCGAG
ACGACCGGCGATACACCCACTTCGTTGTGGTGGTTAACACTCTCTCCGCA
GATGCCTTTGAGCAGGTGAGACTTGCAGTACGTTCGACTACCAAAGCACA
AGAGTTTTGTCTTCTGTCCCCTATTCTGTCTCAGTTGCGCGCGTGCATGA
AAGATATAGTACCTGTCGCTAAAACGAGCGACAGCTAATAGATGCAACTT
TCGTCAGACGTGCGTCACAGGGCGGACAGTGCATGTACATGCTAATGACA
CGCGTGGTTTAATGATTTTTGTGGCTTGATCACCCCCGCCCCCTCACCCA
CATCCTACTTGTTGCGGTCGAACATCCCCCCGCTTGTGTACTCTGAAAAA
AAAAAAGCCGTTGCCTGCTGTGCGTGTGTACTGCTGGGCTGGGCCTGTGG
TCGCTAGGCGGGTGTGTTGTGTCCTACGCTTCATGGTGTCGCCTTTTCTT
CTTCTTTTCCTCCATTTTCAATTGATCGCAATCTATGATCAAGTTTAGTC
GAAGACACGCACAACCTTTTTCCTGGGCACTGGATCTTATATTGGGAGGC
CCAGTGTGGGCTAGAGTCTCTCTTGGCTCGAATTAGTCAGGAGCCGATTC
CACGTTCCTGGCCTGCGTCATAAAAAGGTCTCCTCCCTGTTGTTTGCGCT
TGTCGTTTGTTGTTCTAGTCCATCCTCAAGGAAGCGAAGGAGTCGGACGC
TCCTGTATGTCGGAGGGGAGAACGGGGGAAGGAGAAGGCGCGAAAGCAAG
CGGCGGAGGAAACGGCCACTCAAGAACGGGCACATTCCGCGGCAGCAGCT
CAGGCGGAGCGGCTTCGGGCGGCGGAGGAAGCGGCCGCTCAAGATCGAGC
ACGTGCCGCGGCAGCAGCTCAGGCGGAGCGTCTTCGGGCGGCGGAGGAAG
CGGCCGCGCAAGATCGAGCACGTGCCGCGGCAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:49578..51961-

>mRNA_P-fluviatile_contig14.1995.1 ID=mRNA_P-fluviatile_contig14.1995.1|Name=mRNA_P-fluviatile_contig14.1995.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2562bp|location=Sequence derived from alignment at P-fluviatile_contig14:49578..51961- (Porterinema fluviatile SAG_2381)
AGCGGTGGGTGCGGTGGTGGGCGCCGCAACCGTGGGCGCCGCTACCGCGG
GCAACACGGGGCTAATAGAGGTCGGGGTGAGAGCCAGCCATACATGGACG
ACTACTGCAACAAGCAGCTGCTGAAAACCATCGAGAACAAGCTCGACGAG
TGTTTGGCGAATGGCACGTGGAGAAATGGCGTCAAGGAGGAGGGCGTTCA
AGACCTGATCGACTTCGCCGAGGATTTGTACGACCCGTTCGAAGCAGAGA
CCATCAGCCCTATTCCACAGAGCGGTGGGTGCGGTGGTGGGCGCCGCAAC
CGTGGGCGCCGCTACCGCGGGCAACACGGGGCTAATAGAGGTCGGGGTGA
GAGCCAGCCATACATGGACGACTACTGCAACAAGCAGCTGCTGAAAACCA
TCGAGAACAAGCTCGACGAGTGTTTGGCGAATGGCACGTGGAGAAATGGC
GTCAAGGAGGAGGGCGTTCAAGACCTGATCGACTTCGCCGAGGATTTGTA
CGACCCGTTCGAAGCAGAGACCATCAGCCCTATTCCACAGGGGAGCTTCG
GTTGTTTCGGCGCCGACGATGTCGACCCCATCGCTGCTGCTCTGTTGAAC
GAGGCTGCAGCACTACACGGTGGAGGGTTGGGAACACCTATGAAAACCAA
GGGGAACGGCGCGTGCTTGATGAACGGATTAGTATCGGCAGCACTCAACA
TGAAGTATTCGGATGAGTGGCCGGGAGATGGACCCGCGCTTGCTCTTCGT
GCCGCTGCTGTTCGAACCGCCCTCGTGAAGTTTAAGACTTTTTTGAGCCC
TGACGGATACCTTCAGGAGTATTATCCTGGGCAGCTGTTCAATTACGGCG
ATGGAGAGCGGGTGAAAAACCTCACGGGCGGGCTGGAGTGTCCAATAGAT
ATGCCGGTCGAAATGGCGCGGCTGCACTTCCTCTGCGCCCTCAGGAACAT
CACTGGGCCGTACAGCACTTGCGAAGGGGCGTGCTTGCCGTGGGTTGCCG
AGGTTTTCGGCCTCAAAGTTTGGGTCGTTCACCCAGGGGAGCTTCGGTTG
TTTCGGCGCCGACGATGTCGACCCCATCGCTGCTGCTCTGTTGAACGAGG
CTGCAGCACTACACGGTGGAGGGTTGGGAACACCTATGAAAACCAAGGGG
AACGGCGCGTGCTTGATGAACGGATTAGTATCGGCAGCACTCAACATGAA
GTATTCGGATGAGTGGCCGGGAGATGGACCCGCGCTTGCTCTTCGTGCCG
CTGCTGTTCGAACCGCCCTCGTGAAGTTTAAGACTTTTTTGAGCCCTGAC
GGATACCTTCAGGAGTATTATCCTGGGCAGCTGTTCAATTACGGCGATGG
AGAGCGGGTGAAAAACCTCACGGGCGGGCTGGAGTGTCCAATAGATATGC
CGGTCGAAATGGCGCGGCTGCACTTCCTCTGCGCCCTCAGGAACATCACT
GGGCCGTACAGCACTTGCGAAGGGGCGTGCTTGCCGTGGGTTGCCGAGGT
TTTCGGCCTCAAAGTTTGGGTCGTTCACCCAGGAGCAACAGCGGCGTACG
TGGGCGCTGCGCGGAATTTGCGGGCGTGGGCGCCGTTGTCGTGCAAGCAG
ATGGGCCGGGAAGAGGTGGCGAAAATACCAACGGTTTACTTGTCCAACTC
TCTCTCCCGTGTAGTCGGGGATGGATTCAAGGAGTTCAGCACGGTACAAG
AGTTCCACGCCTTGCGAGACGACCGGCGATACACCCACTTCGTTGTGGTG
GTTAACACTCTCTCCGCAGATGCCTTTGAGCAGGAGCAACAGCGGCGTAC
GTGGGCGCTGCGCGGAATTTGCGGGCGTGGGCGCCGTTGTCGTGCAAGCA
GATGGGCCGGGAAGAGGTGGCGAAAATACCAACGGTTTACTTGTCCAACT
CTCTCTCCCGTGTAGTCGGGGATGGATTCAAGGAGTTCAGCACGGTACAA
GAGTTCCACGCCTTGCGAGACGACCGGCGATACACCCACTTCGTTGTGGT
GGTTAACACTCTCTCCGCAGATGCCTTTGAGCAGTCCATCCTCAAGGAAG
CGAAGGAGTCGGACGCTCCTGTATGTCGGAGGGGAGAACGGGGGAAGGAG
AAGGCGCGAAAGCAAGCGGCGGAGGAAACGGCCACTCAAGAACGGGCACA
TTCCGCGGCAGCAGCTCAGGCGGAGCGGCTTCGGGCGGCGGAGGAAGCGG
CCGCTCAAGATCGAGCACGTGCCGCGGCAGCAGCTCAGGCGGAGCGTCTT
CGGGCGGCGGAGGAAGCGGCCGCGCAAGATCGAGCACGTGCCGCGGCATC
CATCCTCAAGGAAGCGAAGGAGTCGGACGCTCCTGTATGTCGGAGGGGAG
AACGGGGGAAGGAGAAGGCGCGAAAGCAAGCGGCGGAGGAAACGGCCACT
CAAGAACGGGCACATTCCGCGGCAGCAGCTCAGGCGGAGCGGCTTCGGGC
GGCGGAGGAAGCGGCCGCTCAAGATCGAGCACGTGCCGCGGCAGCAGCTC
AGGCGGAGCGTCTTCGGGCGGCGGAGGAAGCGGCCGCGCAAGATCGAGCA
CGTGCCGCGGCA
back to top