mRNA_P-fluviatile_contig13.1984.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1984.1
Unique NamemRNA_P-fluviatile_contig13.1984.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5KKN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.790e-25
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV
Sbjct:  251 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 296
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5KNJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.500e-24
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV
Sbjct:  382 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 427
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5JRJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.760e-23
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            VTGGEGSGRGAGAWRHRFRQATPGTTG DKYLLN CHHSINQDTFV
Sbjct:  187 VTGGEGSGRGAGAWRHRFRQATPGTTGCDKYLLNGCHHSINQDTFV 232
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.200e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            VTGGEGSGRGAGAWRHRFRQATPGTTG DKYLLNECHHSINQDTFV
Sbjct: 1234 VTGGEGSGRGAGAWRHRFRQATPGTTGCDKYLLNECHHSINQDTFV 1279
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.700e-22
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            VTGGEGSG GAGAWRHRFRQATPGTTGYDKY+LNECHHSINQDT V
Sbjct: 1092 VTGGEGSGHGAGAWRHRFRQATPGTTGYDKYILNECHHSINQDTVV 1137
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-16
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            V GG GS  G G WRHRFRQATPGT GYD+YL NECHHSINQDTFV
Sbjct: 1338 VAGGGGSSHG-GVWRHRFRQATPGTAGYDRYLYNECHHSINQDTFV 1382
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5KI50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI50_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.190e-12
Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   40 WRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            WRH FR++TPGT GYD+Y++NECHHSINQDTF+
Sbjct:  605 WRHYFRESTPGTDGYDRYVVNECHHSINQDTFI 637
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.200e-12
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   40 WRHRFRQATPGTTGYDKYLLNECHHSINQDTFV 138
            WRH FR+ATPGT GYD+YL+NECHHSI QDTF+
Sbjct:  792 WRHYFREATPGTDGYDRYLVNECHHSITQDTFI 824
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5K5N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-10
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLL 99
            VTGGEG G GAGAWRHRFRQ TPGTTGYDKY++
Sbjct:  584 VTGGEGLGHGAGAWRHRFRQDTPGTTGYDKYII 616
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BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Match: A0A6H5KX28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX28_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.090e-10
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   52 FRQATPGTTGYDKYLLNECHHSINQDTFV 138
            FRQATPGTTG D+YL NECHHSINQDTF 
Sbjct:   97 FRQATPGTTGCDRYLYNECHHSINQDTFT 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KKN3_9PHAE6.790e-25100.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNJ3_9PHAE3.500e-24100.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ8_9PHAE4.760e-2395.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE1.200e-2297.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX6_9PHAE5.700e-2293.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE2.760e-1680.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI50_9PHAE3.190e-1275.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE3.200e-1278.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5N2_9PHAE1.850e-1084.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX28_9PHAE2.090e-1086.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3373577..3373750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.1067874-CDS-P-fluviatile_contig13:3373576..33737171622815588.1067874-CDS-P-fluviatile_contig13:3373576..3373717Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3373577..3373717 +
1693562363.1492894-CDS-P-fluviatile_contig13:3373576..33737171693562363.1492894-CDS-P-fluviatile_contig13:3373576..3373717Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3373577..3373717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.1183426-UTR-P-fluviatile_contig13:3373717..33737501622815588.1183426-UTR-P-fluviatile_contig13:3373717..3373750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3373718..3373750 +
1693562363.1569643-UTR-P-fluviatile_contig13:3373717..33737501693562363.1569643-UTR-P-fluviatile_contig13:3373717..3373750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3373718..3373750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1984.1prot_P-fluviatile_contig13.1984.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3373577..3373717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1984.1

>prot_P-fluviatile_contig13.1984.1 ID=prot_P-fluviatile_contig13.1984.1|Name=mRNA_P-fluviatile_contig13.1984.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=47bp
VTGGEGSGRGAGAWRHRFRQATPGTTGYDKYLLNECHHSINQDTFV*
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mRNA from alignment at P-fluviatile_contig13:3373577..3373750+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1984.1 ID=mRNA_P-fluviatile_contig13.1984.1|Name=mRNA_P-fluviatile_contig13.1984.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=174bp|location=Sequence derived from alignment at P-fluviatile_contig13:3373577..3373750+ (Porterinema fluviatile SAG_2381)
GTGACGGGCGGGGAAGGGTCGGGTCGTGGGGCTGGTGCTTGGCGCCACAG
ATTCCGCCAGGCTACGCCGGGTACCACCGGGTATGACAAGTACCTTTTGA
ATGAGTGTCATCACTCCATCAACCAAGACACTTTCGTCTGAGCACGTCGG
GCGTGTCAGAGCCGAGAGAGGTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3373577..3373750+

>mRNA_P-fluviatile_contig13.1984.1 ID=mRNA_P-fluviatile_contig13.1984.1|Name=mRNA_P-fluviatile_contig13.1984.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=282bp|location=Sequence derived from alignment at P-fluviatile_contig13:3373577..3373750+ (Porterinema fluviatile SAG_2381)
GTGACGGGCGGGGAAGGGTCGGGTCGTGGGGCTGGTGCTTGGCGCCACAG
ATTCCGCCAGGCTACGCCGGGTACCACCGGGTATGACAAGTACCTTTTGA
ATGAGTGTCATCACTCCATCAACCAAGACACTTTCGTCTGAGTGACGGGC
GGGGAAGGGTCGGGTCGTGGGGCTGGTGCTTGGCGCCACAGATTCCGCCA
GGCTACGCCGGGTACCACCGGGTATGACAAGTACCTTTTGAATGAGTGTC
ATCACTCCATCAACCAAGACACTTTCGTCTGA
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