mRNA_P-fluviatile_contig13.1983.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig13.1983.1
Unique Name	mRNA_P-fluviatile_contig13.1983.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.610e-42
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H+IGG YFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQ GCLGRCKLTDEEGAAFEQE
Sbjct:  107 KHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQKGCLGRCKLTDEEGAAFEQE 178

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.280e-41
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H+IGG YFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE
Sbjct:  598 QHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 669

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 8.140e-41
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H+IGG YFGWAWRTPAVQRL H+THVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE
Sbjct:  251 KHSIGGSYFGWAWRTPAVQRLNHRTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 322

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.030e-40
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H+IGG YFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLL NGCLGRCKLTD+EGAAFEQE
Sbjct:  541 KHSIGGSYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLGNGCLGRCKLTDDEGAAFEQE 612

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.070e-37
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = 1

Query:   58 LKPQRHPREHAIGGP---YFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            L+    P+  A+  P   YFGWAWRTPAVQRLKHQTHVGTLASPGAC QGETGLQCEILGLL+NGCLGRCKLTDEEGAAFEQE
Sbjct:  189 LQSNARPKPFAVTDPRGSYFGWAWRTPAVQRLKHQTHVGTLASPGACRQGETGLQCEILGLLKNGCLGRCKLTDEEGAAFEQE 271

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 6.010e-37
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H+IGG  FGWAWRTPAVQRLKHQTHVGTLA PGACSQGETGLQCEIL LLQNG LGRCKLTDEEGAAFEQE
Sbjct:  415 KHSIGGSCFGWAWRTPAVQRLKHQTHVGTLARPGACSQGETGLQCEILVLLQNGYLGRCKLTDEEGAAFEQE 486

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.410e-36
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H++GG YFGWAWR PAVQRLKHQ+HVGTLASPGAC +GE GLQCE+LGLLQNGCLGR KLTD+EGAAFEQE
Sbjct:  627 KHSVGGSYFGWAWRAPAVQRLKHQSHVGTLASPGACCRGEIGLQCEVLGLLQNGCLGRAKLTDQEGAAFEQE 698

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.110e-30
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H++GG YFGW WRT AVQRLK QTHVGTLAS GAC QGE GLQCEILGLLQ GCLG C LT+++G  + QE
Sbjct:  151 KHSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGLQCEILGLLQQGCLGECMLTEDDGTTYLQE 222

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BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.200e-29
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H++GG YFGW WRT AVQRLK QTHVGTLAS GAC QGE GLQCEILGLLQ GCLG C LT+++G  + QE
Sbjct:  527 KHSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGLQCEILGLLQRGCLGECMLTEDDGTTYLQE 598

[Close]

BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 8.410e-29
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1

Query:   82 EHAIGGPYFGWAWRTPAVQRLKHQTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE 297
            +H+IGG YFGW WR+ AVQRLK+QTHVGTLA+PGA S+GE GLQCEILGLLQ GCLGR  L DE+GA  E+E
Sbjct:  293 KHSIGGSYFGWGWRSQAVQRLKNQTHVGTLATPGARSEGENGLQCEILGLLQQGCLGRRVLRDEQGARSEEE 364

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig13.1983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KU21_9PHAE	3.610e-42	94.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJM6_9PHAE	1.280e-41	95.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQX1_9PHAE	8.140e-41	93.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0J4_9PHAE	4.030e-40	93.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYX6_9PHAE	1.070e-37	80.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSZ8_9PHAE	6.010e-37	90.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9M0_9PHAE	2.410e-36	83.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G2D4_ECTSI	5.110e-30	72.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JWC0_9PHAE	1.200e-29	72.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KML3_9PHAE	8.410e-29	73.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig13	contig	P-fluviatile_contig13:3368528..3369604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	299
Cds size	297
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815588.052592-CDS-P-fluviatile_contig13:3368527..3368611	1622815588.052592-CDS-P-fluviatile_contig13:3368527..3368611	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 3368528..3368611 +
1693562363.1344519-CDS-P-fluviatile_contig13:3368527..3368611	1693562363.1344519-CDS-P-fluviatile_contig13:3368527..3368611	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 3368528..3368611 +
1622815588.0667448-CDS-P-fluviatile_contig13:3369389..3369602	1622815588.0667448-CDS-P-fluviatile_contig13:3369389..3369602	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 3369390..3369602 +
1693562363.1417863-CDS-P-fluviatile_contig13:3369389..3369602	1693562363.1417863-CDS-P-fluviatile_contig13:3369389..3369602	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 3369390..3369602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig13.1983.1	prot_P-fluviatile_contig13.1983.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig13 3368528..3369602 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig13:3368528..3369604+
coding sequence from alignment at P-fluviatile_contig13:3368528..3369604+

protein sequence of mRNA_P-fluviatile_contig13.1983.1

>prot_P-fluviatile_contig13.1983.1 ID=prot_P-fluviatile_contig13.1983.1|Name=mRNA_P-fluviatile_contig13.1983.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=99bp
ADERPRQLRAYTARGKRHELKPQRHPREHAIGGPYFGWAWRTPAVQRLKH
QTHVGTLASPGACSQGETGLQCEILGLLQNGCLGRCKLTDEEGAAFEQE

mRNA from alignment at P-fluviatile_contig13:3368528..3369604+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig13.1983.1 ID=mRNA_P-fluviatile_contig13.1983.1|Name=mRNA_P-fluviatile_contig13.1983.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-fluviatile_contig13:3368528..3369604+ (Porterinema fluviatile SAG_2381)
GCTGACGAGCGACCACGTCAACTGCGTGCCTACACGGCGAGAGGGAAACG
TCATGAACTCAAACCACAACGGCACCCTCGCGAGGTCAGTCCCATTCTTC
GGCTTTGACGGCATACGAGCAAGAGTGTGCGGGAGGAAGGTATACGTCAA
CGACACTTGTGTTTGCGAGGTCGAGGGAGTGGCTACCCTATGTCGTATTT
TGGAGATCTTCTACGATGGAGAACGTCGGTTGGTGCTAGTAACCGTGCGG
CTGTTCAGGGGGGTGAGCGAGGTACGGGGCGTGGGGAATGAGGAGAGACG
TGGCGGACTGTTACGGGTGTGGGAGGATTGCACCTGCAAACTGGAGTTGA
AGGCCAACGACGTTCTGGGGCTGGTTGAGATGGAGACGCCGCACGAGATG
GCGGCAGCTGGCACCCGTACCCATGGGACCGCTTTTTTGGGAAAGGTTTT
GTAAGGCAGACCGGTACAAAGCGAGCACTGCAGAGTAACGCCAGGCCTAA
GCCGTTCGCGGTGACGGAGTCCCCGTGGTGCGCCGAGGGGCCCGCAAACA
GGCCGCTTTGGGGGCTGCGACGTGAGGGCGTACATCTCAACGACATTAAT
CTGCCCTACTACTCCGCGCCGACGGTGTTTCACTGCGATGCATTCAACGC
CTTTGGAATGGGTTGCAAGGTGAGCGTGTGGTTTTGAGATGGTTTCGCGC
GAAGGTATCGGAATGTGTATCACACACACAGGACCACCATCCTTATGTTA
TTGGGGGACGTCCCCCAGATCTAACCCCGAGCgGGGGTGATAAATTCGCA
ATAGCTTACCGTGATTCCCCATCCTTCGTGTATGCACATGCATGCGATGT
TGTGGTTCGCAGCATGCCATAGGAGGGCCCTACTTTGGATGGGCTTGGCG
AACGCCAGCGGTTCAGCGGTTGAAACATCAAACGCACGTCGGCACTCTCG
CGAGCCCGGGAGCTTGCAGCCAGGGAGAGACCGGCCTGCAGTGCGAAATA
CTCGGACTGCTACAAAATGGATGCCTGGGGCGGTGCAAGCTGACAGACGA
AGAAGGGGCGGCGTTTGAGCAAGAGGT

Coding sequence (CDS) from alignment at P-fluviatile_contig13:3368528..3369604+

>mRNA_P-fluviatile_contig13.1983.1 ID=mRNA_P-fluviatile_contig13.1983.1|Name=mRNA_P-fluviatile_contig13.1983.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=594bp|location=Sequence derived from alignment at P-fluviatile_contig13:3368528..3369604+ (Porterinema fluviatile SAG_2381)
GCTGACGAGCGACCACGTCAACTGCGTGCCTACACGGCGAGAGGGAAACG
TCATGAACTCAAACCACAACGGCACCCTCGCGAGGCTGACGAGCGACCAC
GTCAACTGCGTGCCTACACGGCGAGAGGGAAACGTCATGAACTCAAACCA
CAACGGCACCCTCGCGAGCATGCCATAGGAGGGCCCTACTTTGGATGGGC
TTGGCGAACGCCAGCGGTTCAGCGGTTGAAACATCAAACGCACGTCGGCA
CTCTCGCGAGCCCGGGAGCTTGCAGCCAGGGAGAGACCGGCCTGCAGTGC
GAAATACTCGGACTGCTACAAAATGGATGCCTGGGGCGGTGCAAGCTGAC
AGACGAAGAAGGGGCGGCGTTTGAGCAAGAGCATGCCATAGGAGGGCCCT
ACTTTGGATGGGCTTGGCGAACGCCAGCGGTTCAGCGGTTGAAACATCAA
ACGCACGTCGGCACTCTCGCGAGCCCGGGAGCTTGCAGCCAGGGAGAGAC
CGGCCTGCAGTGCGAAATACTCGGACTGCTACAAAATGGATGCCTGGGGC
GGTGCAAGCTGACAGACGAAGAAGGGGCGGCGTTTGAGCAAGAG