mRNA_P-fluviatile_contig13.1981.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1981.1
Unique NamemRNA_P-fluviatile_contig13.1981.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1981.1 vs. uniprot
Match: A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.440e-25
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:    8 GYQRLQSFLDLLAEKSPGTIVDCEWDEKGHFLGCFVMLGGVANFACAVVQQVACMDFAHMKGEWNGTIGTISTKSSD 238
            G QR QS++DLLA  S GTI +CEWD +GH    F+MLG VA+FA   V QVACMDF HM GEWNG IG I  KSS+
Sbjct:  174 GIQRFQSYMDLLATDSSGTITNCEWDAQGHLERAFLMLGPVAHFATTGVPQVACMDFCHMTGEWNGVIGAICVKSSN 250
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BLAST of mRNA_P-fluviatile_contig13.1981.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.570e-9
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:  122 GGVANFACAVVQQVACMDFAHMKGEWNGTIGTISTKSSD 238
            G V +   + VQQV CMDFAHMKGEWNGTIG ++TKSSD
Sbjct:  191 GTVVHCEGSGVQQVLCMDFAHMKGEWNGTIGAMTTKSSD 229
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BLAST of mRNA_P-fluviatile_contig13.1981.1 vs. uniprot
Match: UPI001FB1497E (uncharacterized protein LOC124928243 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1497E)

HSP 1 Score: 51.2 bits (121), Expect = 1.260e-5
Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 2 
Query:    2 EAGYQRLQSFLDLLAEKSPGTIVDCEWDEKGHFLGCFVMLG-GVANFACAVVQQVACMDFAHMKGEWNGTI 211
            E  Y++L S+L +LA+ +PGTI+D + DE GHF   F+ LG  +  F     + V C+D + +K +  G +
Sbjct:   30 EESYRKLPSYLFMLAKNNPGTIIDIQTDEHGHFRYMFMSLGYSIRGFRYC--RPVLCVDASFLKHKIEGQL 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K387_9PHAE2.440e-2562.34MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAT0_9PHAE9.570e-969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001FB1497E1.260e-536.62uncharacterized protein LOC124928243 n=1 Tax=Impat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3361591..3364464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size241
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1981.1prot_P-fluviatile_contig13.1981.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3361592..3364464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.6652668-CDS-P-fluviatile_contig13:3361591..33616711622815536.6652668-CDS-P-fluviatile_contig13:3361591..3361671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3361592..3361671 -
1693562172.6940026-CDS-P-fluviatile_contig13:3361591..33616711693562172.6940026-CDS-P-fluviatile_contig13:3361591..3361671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3361592..3361671 -
1622815536.6877167-CDS-P-fluviatile_contig13:3362688..33627691622815536.6877167-CDS-P-fluviatile_contig13:3362688..3362769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3362689..3362769 -
1693562172.7060618-CDS-P-fluviatile_contig13:3362688..33627691693562172.7060618-CDS-P-fluviatile_contig13:3362688..3362769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3362689..3362769 -
1622815536.6986904-CDS-P-fluviatile_contig13:3364385..33644641622815536.6986904-CDS-P-fluviatile_contig13:3364385..3364464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3364386..3364464 -
1693562173.0126016-CDS-P-fluviatile_contig13:3364385..33644641693562173.0126016-CDS-P-fluviatile_contig13:3364385..3364464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3364386..3364464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1981.1

>prot_P-fluviatile_contig13.1981.1 ID=prot_P-fluviatile_contig13.1981.1|Name=mRNA_P-fluviatile_contig13.1981.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp
RSGLPTTPELLGPACREEPGHHRRLRVGRKGAFPRLFCHAGRCGKLRLCS
GTAGCLHGFCSHEGRVERDNRDDQHEELRQ
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mRNA from alignment at P-fluviatile_contig13:3361591..3364464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1981.1 ID=mRNA_P-fluviatile_contig13.1981.1|Name=mRNA_P-fluviatile_contig13.1981.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2874bp|location=Sequence derived from alignment at P-fluviatile_contig13:3361591..3364464- (Porterinema fluviatile SAG_2381)
AGAAGCGGGCTACCAACGACTCCAGAGCTTCTTGGACCTGCTTGCCGAGA
AGAGCCCGGGCACCATCGTCGACTGCGAGGTGAGCTGATTGGCCCTCTGT
TTATATTGATGACGCTCCGAACACATAAAACTTCTCGCTTACGGCGATTA
CATACTTTCCTGCCTTTTTGGCGTGCCTCTTGAATGTATGTGCGTCATTT
GAATCGTATCTAAAGGGGCGCAAAAATGATCTCCTTTTTTTAAGAGTCCT
CGCTGGTTGGTGCACGTTTGGCGGTGAAGAAAGAGGGAGCCTTACTGTAG
ATACTGTCGGGTAGAGGGTTTAGGAAAAAGAACGAAGCAAATCGATGCTG
TAATGGCGGCGTAGAGATGTTTTGCCTCGATTCGCGACTCCCGCGGGGAC
CCGCAGTCAAAACCACGCTCATTAACCCCCCCCCCCAAAAGCCCCCGCCC
GTCGGAGGCACTCGCTGAGCCAGTACGACAGCCCTAGGAGCCCACATGCT
CCATCCCGGACAAAAAAAAACACAGGATATATGACCTACTGCTCATAGCC
ATGTAGTGTCGGTGCAGATTTTAGAGCGCAGATCGCTCTGTGAGTGTCGA
AATAGAGCTGCCTTCCAACACATTTCGGTGCTCTCGTCAAGTCCAGCAGC
AGCAGACGGCAGCAGCACGTCTAATTGTAATGCGCAGAGTTGGCTACCGT
GAGCGGGTGCTCTGCACACCTGAGACTCTGCTCTTGCCGATATGCGTAGT
CTCCTGATGGATCACTGAAGGATCAAGACGCTCCGTTCTGTATAGGAAAC
GCCCTGCTGTTTTCTCAACTGGCTCTCTTTTTCGTCTCCCTCTCTCTCTT
CTCTATCCAATGTTTGCGAGGCCACGTCTATTTGTAATGCGCAAGTTACC
ACCCCAATTTTGGTCAACGCTGTAGTCAGACACCTCTACTACACAGCCTC
AAAGTCGCGTTAAGGATCACTCTCTGTAGGCTGAGATATTAGATATCTGT
ATCTCCGTGCCTGGGTATACCGAGGCTCTGTGCTTCTTCTCCACGCCCCA
GGATGTACCTCCTTTCAAATCTGCGCCGTATGTATGAGCCCCCTTGATAT
CGGGAGTCAAATAACGCTTGGGTGTGTGATGGGGAGGCCAGCCTCCCCTC
TATAGATATGTGCCACAACACTCTGGGCGGACATTAATCCAAGTGCATTA
TTTGAATTTGAATTTTGTAGTTGGCGCGCTTTTTGAGGGAAGCCACAACG
AAAAAAACAAAATGGGAAGGAAAAAGTTGCTTGTCGAAAAGGCAAATACA
TCTGTGCCATGTCGGTGTCATTTCTCCCGCTGTTGCAACCACTCTCACGA
GATTCAGCAGTACACCTATTTTTGTAGCTTATTTTTGGGCCCATGTTGTC
CCCTTGTATTTTTTCACGGCGTTCGAGTGTGCCCGTGTCTTGTAACGACG
GCTCCGTGGATGTTTTGGAGAGTAAGGTTGCAAGCCACAACACAATGTTG
CGTGTTGCGTGTCGACAAGGCCCGAAATATATCGGGGTGAAGTCTCCCGC
TGTCGCAACCACAACTCGACCAAATATACACATGCACATTCACATTTATC
TGTCACGTTGCGCCTCGACGTGGTAAAGTTGTGCATGTTCCCTAACATGT
CCTCCATTCGTCGTGTTGCCTCTTGATGCCGATTGATGTTGACAGTGGGA
CGAAAAGGGGCATTTCCTCGGCTGTTTTGTCATGCTGGGAGGTGTGGCAA
ACTTCGCTTGTGCAGTGGTACAGCAGGTACGTGTGGTACGGCGCGCTACA
CCCGTTTCATATGTTTTGGCGTGCTTGCTTGTTGCTTGATTTGAAGTTTG
GGACGGCCGATGGCTCCTTGAACTACCATGGAGTAAATAAGCCTCTGCGA
ACCCAACAAAGTTTGGAAGGTTGGAAGCCTTGACTTCCCTCCCCCCCCCC
CCACCCCGGCGAGAAGTGAAGGGTTACTTTATTGGCTTTTGGGGGGGTCT
ATTTGTGTCGTCTGTTGGCGATGTTGTTGAATCCCAAGGATGGAAAAACT
CGAAAGAGGTGATCGTCTCGCCTCCCTATTGCCTCAGCGCCGCGAGAGAA
GCAATTTAATGAAAGGCCCTTAATGAAAAGATATCAAGATATGCCCATGT
AAATACTATCAATGGAATGTATATAGGCACGAAATATTGAGCCCCTCGGT
GTTCGGCCCACATGAAATGTCCCATCAATGTTCCTTTACTGTTGATGTTG
ATGTTGAGTAATGTACAAGACGTTCCAATTGGGAGTCGGTGGGGTCGGCT
GCCTGAATTTTCCCTTTTTTGGTGAAGCGCGAGACCTTGGTTGCACCTCC
CACCTACGACACACCCCATCAACCACCGATGCCACCCCTTCCCGACTCAT
CCCCCTTAGTCAAACTACTTGCTAAAATATGGGGTAAAATATGAGCCCAC
GGCGCCCCGTACAGCCATCCCTTGGTGCTCGCCCAAGAATTTGGCATTGC
GGTTATTTTTGGAAAACATGAAACAACCTGAGAGAGGTGACTTTGCACCC
CGCTTGTAGCCGTTGTTGTCAGCGTGTGGTTAACGTGTATGAGGTCTGCG
TGGGGGCAAAAGCGGGTCTGCCGCGCCTTTATTGCCGCCCTGGTCTTCTC
GTGTGCATGTCGACGATTCCCATATCACCATCTCTAGCGTGGGCATGAGT
CTATTGAACCCGTCCACGTGGGCTCAACGCTTTTGCATGTGTCCCCCCCC
CTACCCCTCCCCAATTCCTCGTCTTGCACCCTCAAAAACTCAGGTTGCCT
GCATGGATTTTGCTCACATGAAGGGAGAGTGGAACGGGACAATCGGGACG
ATCAGCACGAAGAGCTCCGACAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3361591..3364464-

>mRNA_P-fluviatile_contig13.1981.1 ID=mRNA_P-fluviatile_contig13.1981.1|Name=mRNA_P-fluviatile_contig13.1981.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig13:3361591..3364464- (Porterinema fluviatile SAG_2381)
AGAAGCGGGCTACCAACGACTCCAGAGCTTCTTGGACCTGCTTGCCGAGA
AGAGCCCGGGCACCATCGTCGACTGCGAGAGAAGCGGGCTACCAACGACT
CCAGAGCTTCTTGGACCTGCTTGCCGAGAAGAGCCCGGGCACCATCGTCG
ACTGCGAGTGGGACGAAAAGGGGCATTTCCTCGGCTGTTTTGTCATGCTG
GGAGGTGTGGCAAACTTCGCTTGTGCAGTGGTACAGCAGTGGGACGAAAA
GGGGCATTTCCTCGGCTGTTTTGTCATGCTGGGAGGTGTGGCAAACTTCG
CTTGTGCAGTGGTACAGCAGGTTGCCTGCATGGATTTTGCTCACATGAAG
GGAGAGTGGAACGGGACAATCGGGACGATCAGCACGAAGAGCTCCGACAA
GTTGCCTGCATGGATTTTGCTCACATGAAGGGAGAGTGGAACGGGACAAT
CGGGACGATCAGCACGAAGAGCTCCGACAA
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