mRNA_P-fluviatile_contig13.1979.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1979.1
Unique NamemRNA_P-fluviatile_contig13.1979.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3347564..3348183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size620
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1979.1prot_P-fluviatile_contig13.1979.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3347573..3347902 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.269714-UTR-P-fluviatile_contig13:3347563..33475721622815538.269714-UTR-P-fluviatile_contig13:3347563..3347572Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3347564..3347572 +
1693562174.2147055-UTR-P-fluviatile_contig13:3347563..33475721693562174.2147055-UTR-P-fluviatile_contig13:3347563..3347572Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3347564..3347572 +
1622815538.2891996-UTR-P-fluviatile_contig13:3347902..33481831622815538.2891996-UTR-P-fluviatile_contig13:3347902..3348183Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3347903..3348183 +
1693562174.2322068-UTR-P-fluviatile_contig13:3347902..33481831693562174.2322068-UTR-P-fluviatile_contig13:3347902..3348183Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3347903..3348183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.27961-CDS-P-fluviatile_contig13:3347572..33479021622815538.27961-CDS-P-fluviatile_contig13:3347572..3347902Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3347573..3347902 +
1693562174.2233677-CDS-P-fluviatile_contig13:3347572..33479021693562174.2233677-CDS-P-fluviatile_contig13:3347572..3347902Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3347573..3347902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1979.1

>prot_P-fluviatile_contig13.1979.1 ID=prot_P-fluviatile_contig13.1979.1|Name=mRNA_P-fluviatile_contig13.1979.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
MNASKRSATRRLRTCPARPSMAASTHVRAASQQPCVVNRGDCSARGTCCW
GRPGGLQPALETVVVVREVVFLTGVALDDTHEVSDIRHRAGVTGGSGALA
DRGALPGTA*
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mRNA from alignment at P-fluviatile_contig13:3347564..3348183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1979.1 ID=mRNA_P-fluviatile_contig13.1979.1|Name=mRNA_P-fluviatile_contig13.1979.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=620bp|location=Sequence derived from alignment at P-fluviatile_contig13:3347564..3348183+ (Porterinema fluviatile SAG_2381)
ACGGCGCGCATGAACGCTTCGAAGAGGTCAGCAACGCGTCGCTTGCGCAC
CTGCCCCGCCCGCCCATCCATGGCCGCTAGCACGCACGTGCGCGCGGCGA
GCCAGCAACCGTGCGTGGTCAATCGGGGCGATTGTTCGGCCCGGGGCACT
TGCTGCTGGGGCCGGCCGGGTGGGCTGCAACCCGCATTGGAAACAGTAGT
TGTAGTGCGCGAGGTTGTCTTCCTGACAGGAGTAGCACTTGACGACACGC
ACGAGGTCTCGGATATACGACACCGGGCCGGCGTCACCGGCGGGTCGGGA
GCGTTGGCCGATCGTGGCGCACTGCCGGGAACGGCGTAACGTGCAAACAA
GGCACCAAAATAATTAATAACACGTTGGGCATCCCAACCTTACCAAGAAA
CGAAAATCAACCCGCAATGAATCAAGCATAACACACACCGGCCCCTGGGC
ACACAGTTTACCGCTTACGTTTGGTTGATTTCTCGGCAACACTCGGGCGG
AAATCAACTTCGTAAGCCGACATGGCCCAGCGGGGATAACACCAGGGCCT
CAAGTCCCCGTCTTTACCGGGGCATAGAAACAGCCCTTTTCGCCGATCGC
CGTAAGGTCTACGGTCCGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3347564..3348183+

>mRNA_P-fluviatile_contig13.1979.1 ID=mRNA_P-fluviatile_contig13.1979.1|Name=mRNA_P-fluviatile_contig13.1979.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig13:3347564..3348183+ (Porterinema fluviatile SAG_2381)
ATGAACGCTTCGAAGAGGTCAGCAACGCGTCGCTTGCGCACCTGCCCCGC
CCGCCCATCCATGGCCGCTAGCACGCACGTGCGCGCGGCGAGCCAGCAAC
CGTGCGTGGTCAATCGGGGCGATTGTTCGGCCCGGGGCACTTGCTGCTGG
GGCCGGCCGGGTGGGCTGCAACCCGCATTGGAAACAGTAGTTGTAGTGCG
CGAGGTTGTCTTCCTGACAGGAGTAGCACTTGACGACACGCACGAGGTCT
CGGATATACGACACCGGGCCGGCGTCACCGGCGGGTCGGGAGCGTTGGCC
GATCGTGGCGCACTGCCGGGAACGGCGTAAATGAACGCTTCGAAGAGGTC
AGCAACGCGTCGCTTGCGCACCTGCCCCGCCCGCCCATCCATGGCCGCTA
GCACGCACGTGCGCGCGGCGAGCCAGCAACCGTGCGTGGTCAATCGGGGC
GATTGTTCGGCCCGGGGCACTTGCTGCTGGGGCCGGCCGGGTGGGCTGCA
ACCCGCATTGGAAACAGTAGTTGTAGTGCGCGAGGTTGTCTTCCTGACAG
GAGTAGCACTTGACGACACGCACGAGGTCTCGGATATACGACACCGGGCC
GGCGTCACCGGCGGGTCGGGAGCGTTGGCCGATCGTGGCGCACTGCCGGG
AACGGCGTAA
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