mRNA_P-fluviatile_contig13.1978.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1978.1
Unique NamemRNA_P-fluviatile_contig13.1978.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5KMT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMT9_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.910e-46
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYYLFEFATGQFRSAEPILRVPKKDF 228
            MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGG+KTKKAREFQNALWYYLFEFATGQFR AEPILRVPKKDF
Sbjct:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGHKTKKAREFQNALWYYLFEFATGQFRLAEPILRVPKKDF 76
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BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5L031_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L031_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.850e-30
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYY 159
            MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYY
Sbjct:    3 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYY 55
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BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5L1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.580e-28
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYYLFEFATGQFRSAEPILRVPKKDF 228
            MLCDAE+ Q+  AGD+E++QC AER+VQAF+HR NGG+KTKKA EFQN+LWY  F FATG FR AEPIL V  ++F
Sbjct:    2 MLCDAEHIQLREAGDLESRQCYAERQVQAFSHRQNGGFKTKKAWEFQNSLWYKPFSFATGTFRFAEPILNVRNEEF 77
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BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5KXB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.910e-27
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYYLFEFATGQFRSAEPILRVPKKDF 228
            MLCDAE  QVE AG+VET QCLAER++QAFAHRMNGG+KTKKA+EFQNA        ATGQFR AEPILRVPKKDF
Sbjct:  504 MLCDAETLQVETAGEVETYQCLAERRLQAFAHRMNGGFKTKKAKEFQNA------SRATGQFRFAEPILRVPKKDF 573
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BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5J5X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5X2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.000e-25
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYYLFEFATGQFRSAEPILRVPKKDF 228
            MLCDAE+ Q++ AGD+E++QC AER+VQAF+HR NGG+KTKKAREFQN+L    F FATG FR AEPIL V  ++F
Sbjct:    2 MLCDAEHIQLKEAGDLESRQCYAERQVQAFSHRQNGGFKTKKAREFQNSL----FSFATGTFRFAEPILNVRNEEF 73
[Close]
BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5JZ98_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ98_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.340e-24
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNA 147
            MLCDAE QQ EPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNA
Sbjct:    1 MLCDAEIQQAEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNA 49
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BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5K2G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.080e-22
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYYLFEFATGQFRSAEPILRVPKKDF 228
            MLCDAE+ Q++ AGD+E++QC AER+VQAF+HR  GG+KTKKAREFQN+L      FATG  R AEPIL V  ++F
Sbjct:   42 MLCDAEHTQLKEAGDLESRQCYAERQVQAFSHRQTGGFKTKKAREFQNSL----SPFATGTLRFAEPILNVRNEEF 113
[Close]
BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5JZR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.680e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNA 147
            MLCDAE QQV PAG++ET QCLAERKV AFA R+NGG+KTKKAREFQNA
Sbjct:  352 MLCDAEGQQVLPAGEIETNQCLAERKVAAFAERVNGGFKTKKAREFQNA 400
[Close]
BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Match: A0A6H5KQ06_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ06_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.870e-13
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    4 LCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNALWYYLFEFATGQFRSAEPILRVPKKDF 228
            LCDAE   V P G+ ET  CLAERK+ AF    NGG+   K + FQ ALWY L+ +ATG  R   P+  + K  F
Sbjct:  317 LCDAEYYPVPPVGEYETVLCLAERKLNAFGQMRNGGFSEPKYKMFQKALWYGLYNYATGVRRFGHPLATLHKSQF 391
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KMT9_9PHAE1.910e-4697.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L031_9PHAE3.850e-30100.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1F4_9PHAE3.580e-2867.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXB1_9PHAE7.910e-2776.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5X2_9PHAE1.000e-2565.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ98_9PHAE1.340e-2495.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2G7_9PHAE5.080e-2261.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZR1_9PHAE6.680e-1781.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ06_9PHAE2.870e-1348.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3343100..3343661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.0081644-CDS-P-fluviatile_contig13:3343099..33431811622815588.0081644-CDS-P-fluviatile_contig13:3343099..3343181Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3343100..3343181 -
1693562363.11638-CDS-P-fluviatile_contig13:3343099..33431811693562363.11638-CDS-P-fluviatile_contig13:3343099..3343181Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3343100..3343181 -
1622815588.018384-CDS-P-fluviatile_contig13:3343515..33436611622815588.018384-CDS-P-fluviatile_contig13:3343515..3343661Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3343516..3343661 -
1693562363.1268885-CDS-P-fluviatile_contig13:3343515..33436611693562363.1268885-CDS-P-fluviatile_contig13:3343515..3343661Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3343516..3343661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1978.1prot_P-fluviatile_contig13.1978.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3343100..3343661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1978.1

>prot_P-fluviatile_contig13.1978.1 ID=prot_P-fluviatile_contig13.1978.1|Name=mRNA_P-fluviatile_contig13.1978.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
MLCDAENQQVEPAGDVETKQCLAERKVQAFAHRMNGGYKTKKAREFQNAL
WYYLFEFATGQFRSAEPILRVPKKDF
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mRNA from alignment at P-fluviatile_contig13:3343100..3343661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1978.1 ID=mRNA_P-fluviatile_contig13.1978.1|Name=mRNA_P-fluviatile_contig13.1978.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=562bp|location=Sequence derived from alignment at P-fluviatile_contig13:3343100..3343661- (Porterinema fluviatile SAG_2381)
ATGCTCTGCGATGCGGAAAACCAGCAGGTGGAGCCCGCCGGGGACGTGGA
GACCAAACAGTGCCTCGCGGAGCGGAAGGTGCAGGCCTTCGCTCACCGCA
TGAACGGAGGCTATAAGACCAAGAAGGCCCGGGAGTTCCAGAATGCGTGA
GTCGATCTTATAAAAGGTTACGTTTGACGATAATATTTTCGTCCGGGCGC
GACTGCACGACGGGAATAGCTTCTCCGTCCTTCGTACGAACGTGGCGCCG
TAGCGAATACTTACATGCATCCTCGTAAGCTCCTCGAGGCTAATGTTGTG
GAGGACGTGTTGAGAAGGCGTACGCATCGGTGCTTGTATTGTTGCAGGTG
TATCAAACGCGCACGGCGGGACCTACTTGCAGCAATTTTGGCAAGATCTT
CGCCGCAGGCCACCCACCATCTATCACGCAGCGTGTGTTCTCACAGCTTC
CTTTCTGTGCCCGTGCTGTTCCTTGTGTAGATTGTGGTACTACCTGTTCG
AGTTCGCCACGGGCCAGTTCCGCTCGGCCGAACCCATCCTGCGCGTCCCG
AAGAAGGACTTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3343100..3343661-

>mRNA_P-fluviatile_contig13.1978.1 ID=mRNA_P-fluviatile_contig13.1978.1|Name=mRNA_P-fluviatile_contig13.1978.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig13:3343100..3343661- (Porterinema fluviatile SAG_2381)
ATGCTCTGCGATGCGGAAAACCAGCAGGTGGAGCCCGCCGGGGACGTGGA
GACCAAACAGTGCCTCGCGGAGCGGAAGGTGCAGGCCTTCGCTCACCGCA
TGAACGGAGGCTATAAGACCAAGAAGGCCCGGGAGTTCCAGAATGCATGC
TCTGCGATGCGGAAAACCAGCAGGTGGAGCCCGCCGGGGACGTGGAGACC
AAACAGTGCCTCGCGGAGCGGAAGGTGCAGGCCTTCGCTCACCGCATGAA
CGGAGGCTATAAGACCAAGAAGGCCCGGGAGTTCCAGAATGCATTGTGGT
ACTACCTGTTCGAGTTCGCCACGGGCCAGTTCCGCTCGGCCGAACCCATC
CTGCGCGTCCCGAAGAAGGACTTCATTGTGGTACTACCTGTTCGAGTTCG
CCACGGGCCAGTTCCGCTCGGCCGAACCCATCCTGCGCGTCCCGAAGAAG
GACTTC
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