mRNA_P-fluviatile_contig13.1977.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1977.1
Unique NamemRNA_P-fluviatile_contig13.1977.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5KG18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG18_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.600e-22
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR GIDFFETFSPCP+VTSIRLL A+A  LGLDL H D +QAFVQSEL+E VY+RLP+ CG ++
Sbjct:   47 QREGIDFFETFSPCPSVTSIRLLAALACELGLDLCHFDTEQAFVQSELQECVYIRLPQGCGALS 110
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5JSS8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.090e-20
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   19 TNTQRTPTY--NLVDTYCRYHEQRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            TN +R   +  N V T+    E+R G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++
Sbjct:  471 TNAERKEFFGLNAVGTF----EEREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALS 552
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BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.160e-20
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   19 TNTQRTPTY--NLVDTYCRYHEQRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            TN +R   +  N V T+    E+R G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++
Sbjct:  577 TNAERKEFFGLNAVGTF----EEREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALS 658
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-19
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDITRSHSATPPGLRG 306
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++        GL G
Sbjct:  854 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYG 929
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.250e-19
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++
Sbjct:  179 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALS 242
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.850e-19
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++
Sbjct:  377 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALS 440
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.860e-19
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++
Sbjct:  364 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALS 427
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.890e-19
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RLP  CG ++
Sbjct:  577 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALS 640
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.840e-19
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQS+L+EVV++RLP  CG ++
Sbjct:  127 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSDLDEVVFIRLPPGCGALS 190
[Close]
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.300e-19
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   79 QRAGIDFFETFSPCPNVTSIRLLTAMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDIT 270
            QR G+DFFETFSPCP++TSIRLL A+A  L  DL H D +QAFVQSEL+EVV++RL   CG ++
Sbjct:  193 QREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALS 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG18_9PHAE2.600e-2271.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSS8_9PHAE6.090e-2055.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAQ1_9PHAE6.160e-2055.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV09_9PHAE1.570e-1959.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE2.250e-1965.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0K7_9PHAE2.850e-1965.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE2.860e-1965.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K793_9PHAE2.890e-1965.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5L3_9PHAE6.840e-1964.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KM90_9PHAE8.300e-1964.06Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3341009..3341368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog4565.Traes_4DS_75C4B975F.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.9666023-CDS-P-fluviatile_contig13:3341008..33413681622815587.9666023-CDS-P-fluviatile_contig13:3341008..3341368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3341009..3341368 +
1693562363.0992842-CDS-P-fluviatile_contig13:3341008..33413681693562363.0992842-CDS-P-fluviatile_contig13:3341008..3341368Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3341009..3341368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1977.1prot_P-fluviatile_contig13.1977.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3341009..3341368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1977.1

>prot_P-fluviatile_contig13.1977.1 ID=prot_P-fluviatile_contig13.1977.1|Name=mRNA_P-fluviatile_contig13.1977.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
VRNVHATNTQRTPTYNLVDTYCRYHEQRAGIDFFETFSPCPNVTSIRLLT
AMAASLGLDLFHLDVQQAFVQSELEEVVYVRLPRHCGDITRSHSATPPGL
RGRTSCRVPDFAAIQGATF*
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mRNA from alignment at P-fluviatile_contig13:3341009..3341368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1977.1 ID=mRNA_P-fluviatile_contig13.1977.1|Name=mRNA_P-fluviatile_contig13.1977.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=360bp|location=Sequence derived from alignment at P-fluviatile_contig13:3341009..3341368+ (Porterinema fluviatile SAG_2381)
GTACGCAACGTACACGCAACGAATACGCAACGTACACCAACGTACAACCT
AGTCGATACATACTGCCGCTACCACGAACAACGTGCTGGTATTGATTTCT
TTGAGACTTTCTCCCCCTGCCCCAACGTCACAAGTATTCGTCTGCTTACA
GCCATGGCGGCTTCCCTTGGTCTCGACCTTTTCCATCTTGATGTCCAGCA
AGCATTCGTGCAGAGCGAACTCGAGGAAGTCGTGTATGTGCGTTTGCCCC
GGCACTGCGGGGATATCACCCGTAGCCATTCGGCTACCCCTCCAGGGTTA
CGGGGGAGGACCTCGTGCAGGGTACCAGATTTTGCAGCTATACAGGGTGC
CACATTCTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3341009..3341368+

>mRNA_P-fluviatile_contig13.1977.1 ID=mRNA_P-fluviatile_contig13.1977.1|Name=mRNA_P-fluviatile_contig13.1977.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig13:3341009..3341368+ (Porterinema fluviatile SAG_2381)
GTACGCAACGTACACGCAACGAATACGCAACGTACACCAACGTACAACCT
AGTCGATACATACTGCCGCTACCACGAACAACGTGCTGGTATTGATTTCT
TTGAGACTTTCTCCCCCTGCCCCAACGTCACAAGTATTCGTCTGCTTACA
GCCATGGCGGCTTCCCTTGGTCTCGACCTTTTCCATCTTGATGTCCAGCA
AGCATTCGTGCAGAGCGAACTCGAGGAAGTCGTGTATGTGCGTTTGCCCC
GGCACTGCGGGGATATCACCCGTAGCCATTCGGCTACCCCTCCAGGGTTA
CGGGGGAGGACCTCGTGCAGGGTACCAGATTTTGCAGCTATACAGGGTGC
CACATTCTAAGTACGCAACGTACACGCAACGAATACGCAACGTACACCAA
CGTACAACCTAGTCGATACATACTGCCGCTACCACGAACAACGTGCTGGT
ATTGATTTCTTTGAGACTTTCTCCCCCTGCCCCAACGTCACAAGTATTCG
TCTGCTTACAGCCATGGCGGCTTCCCTTGGTCTCGACCTTTTCCATCTTG
ATGTCCAGCAAGCATTCGTGCAGAGCGAACTCGAGGAAGTCGTGTATGTG
CGTTTGCCCCGGCACTGCGGGGATATCACCCGTAGCCATTCGGCTACCCC
TCCAGGGTTACGGGGGAGGACCTCGTGCAGGGTACCAGATTTTGCAGCTA
TACAGGGTGCCACATTCTAA
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