mRNA_P-fluviatile_contig13.1975.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1975.1
Unique NamemRNA_P-fluviatile_contig13.1975.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1975.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.750e-52
Identity = 97/120 (80.83%), Postives = 102/120 (85.00%), Query Frame = -2 
Query:    3 RGAPFLIGRIIAERVDRDGNRGVDLHWFRPTNDDTSNNAALLTFDEYGTSTFVEGYVMMTASDDTRRSGKAKAKRVKDVSWEPVEGIVATCENLVENGRKIPKRVLKVLRSVVGD-KGSA 359
            RGAPFL+GRI AE VDRDG RGVDLHWFRPTND T + AA LT DEYG  TFVEGYVM TASD TRRSGKAK  +VKDVSWEPVEGIVATC+ LV NGRKIP RVLKVLRSVVGD +GSA
Sbjct:  324 RGAPFLVGRIAAESVDRDGTRGVDLHWFRPTNDHTRDKAASLTLDEYGERTFVEGYVM-TASDGTRRSGKAK--KVKDVSWEPVEGIVATCDKLVGNGRKIPNRVLKVLRSVVGDDRGSA 440
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BLAST of mRNA_P-fluviatile_contig13.1975.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.330e-38
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = -2 
Query:   21 RGAPFLIGRIIAERVDRDGNRGVDLHWFRPTNDDTSNNAALLTFDEYGTSTFVEGYVMMTASDDTRRSGKAKAKRVKDVSWEPVEGIVATCENLVENGRKIPKRVLKVLRSVV 359
            R APFL+GRI+AER+  +G RGVDLHW RP++D  SNNAA +T  EY  STFVEG+V+ T + + R     KAKRVKDVSWEPVEGIVATCE LV NGRK+P +VL+VLR+ V
Sbjct:  539 RRAPFLVGRIVAERLGEEGERGVDLHWLRPSSDYLSNNAASVTLREYSNSTFVEGFVLDTCNGNGR---SGKAKRVKDVSWEPVEGIVATCERLVGNGRKVPTKVLRVLRAAV 648
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE3.750e-5280.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE2.330e-3864.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3326345..3326704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.2323036-CDS-P-fluviatile_contig13:3326344..33267041622815538.2323036-CDS-P-fluviatile_contig13:3326344..3326704Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3326345..3326704 +
1693562174.205285-CDS-P-fluviatile_contig13:3326344..33267041693562174.205285-CDS-P-fluviatile_contig13:3326344..3326704Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3326345..3326704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1975.1prot_P-fluviatile_contig13.1975.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3326345..3326704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1975.1

>prot_P-fluviatile_contig13.1975.1 ID=prot_P-fluviatile_contig13.1975.1|Name=mRNA_P-fluviatile_contig13.1975.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
LALPLSPTTDLSTFRTLFGIFLPFSTRFSQVATIPSTGSHDTSFTRFAFA
FPLRRVSSLAVIMTYPSTNVLVPYSSNVRSAALLLVSSLVGRNQCRSTPR
FPSRSTLSAIILPIKNGAPL
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mRNA from alignment at P-fluviatile_contig13:3326345..3326704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1975.1 ID=mRNA_P-fluviatile_contig13.1975.1|Name=mRNA_P-fluviatile_contig13.1975.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=360bp|location=Sequence derived from alignment at P-fluviatile_contig13:3326345..3326704+ (Porterinema fluviatile SAG_2381)
CTCGCACTGCCTTTGTCTCCAACAACAGACCTTAGCACTTTCAGGACCCT
TTTTGGAATCTTTCTGCCGTTCTCAACAAGGTTTTCACAAGTCGCGACAA
TTCCTTCAACGGGTTCCCATGATACATCCTTCACCCGTTTTGCTTTTGCT
TTCCCACTTCGCCGAGTGTCGTCACTAGCGGTCATCATGACGTACCCTTC
AACAAATGTGCTTGTTCCGTACTCGTCAAACGTCAGGAGCGCGGCGTTGT
TGCTCGTGTCGTCGTTGGTCGGGCGAAACCAGTGCAGATCCACACCCCGG
TTTCCGTCACGGTCAACTCTCTCCGCAATTATCCTACCAATCAAGAACGG
AGCCCCCCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3326345..3326704+

>mRNA_P-fluviatile_contig13.1975.1 ID=mRNA_P-fluviatile_contig13.1975.1|Name=mRNA_P-fluviatile_contig13.1975.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig13:3326345..3326704+ (Porterinema fluviatile SAG_2381)
CTCGCACTGCCTTTGTCTCCAACAACAGACCTTAGCACTTTCAGGACCCT
TTTTGGAATCTTTCTGCCGTTCTCAACAAGGTTTTCACAAGTCGCGACAA
TTCCTTCAACGGGTTCCCATGATACATCCTTCACCCGTTTTGCTTTTGCT
TTCCCACTTCGCCGAGTGTCGTCACTAGCGGTCATCATGACGTACCCTTC
AACAAATGTGCTTGTTCCGTACTCGTCAAACGTCAGGAGCGCGGCGTTGT
TGCTCGTGTCGTCGTTGGTCGGGCGAAACCAGTGCAGATCCACACCCCGG
TTTCCGTCACGGTCAACTCTCTCCGCAATTATCCTACCAATCAAGAACGG
AGCCCCCCTCCTCGCACTGCCTTTGTCTCCAACAACAGACCTTAGCACTT
TCAGGACCCTTTTTGGAATCTTTCTGCCGTTCTCAACAAGGTTTTCACAA
GTCGCGACAATTCCTTCAACGGGTTCCCATGATACATCCTTCACCCGTTT
TGCTTTTGCTTTCCCACTTCGCCGAGTGTCGTCACTAGCGGTCATCATGA
CGTACCCTTCAACAAATGTGCTTGTTCCGTACTCGTCAAACGTCAGGAGC
GCGGCGTTGTTGCTCGTGTCGTCGTTGGTCGGGCGAAACCAGTGCAGATC
CACACCCCGGTTTCCGTCACGGTCAACTCTCTCCGCAATTATCCTACCAA
TCAAGAACGGAGCCCCCCTC
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