mRNA_P-fluviatile_contig13.1964.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1964.1
Unique NamemRNA_P-fluviatile_contig13.1964.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3207841..3208385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1964.1prot_P-fluviatile_contig13.1964.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3207956..3208327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.1164823-UTR-P-fluviatile_contig13:3207840..32079551622815538.1164823-UTR-P-fluviatile_contig13:3207840..3207955Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3207841..3207955 +
1693562174.1577058-UTR-P-fluviatile_contig13:3207840..32079551693562174.1577058-UTR-P-fluviatile_contig13:3207840..3207955Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3207841..3207955 +
1622815538.1429026-UTR-P-fluviatile_contig13:3208327..32083851622815538.1429026-UTR-P-fluviatile_contig13:3208327..3208385Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3208328..3208385 +
1693562174.178948-UTR-P-fluviatile_contig13:3208327..32083851693562174.178948-UTR-P-fluviatile_contig13:3208327..3208385Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3208328..3208385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.1308982-CDS-P-fluviatile_contig13:3207955..32083271622815538.1308982-CDS-P-fluviatile_contig13:3207955..3208327Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3207956..3208327 +
1693562174.169694-CDS-P-fluviatile_contig13:3207955..32083271693562174.169694-CDS-P-fluviatile_contig13:3207955..3208327Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3207956..3208327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1964.1

>prot_P-fluviatile_contig13.1964.1 ID=prot_P-fluviatile_contig13.1964.1|Name=mRNA_P-fluviatile_contig13.1964.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
MVNPCPRAMAMANSTYKCPRRTGLVKKASKRGTSWHEAVRSARPAPPAQG
DSTSNTTLLKVAVHSEVKRAAGSSAIHALVSRKTIGEPEQGRVAQRTAAQ
RAAMATWTAASIDQRREAGRVGH*
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mRNA from alignment at P-fluviatile_contig13:3207841..3208385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1964.1 ID=mRNA_P-fluviatile_contig13.1964.1|Name=mRNA_P-fluviatile_contig13.1964.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=545bp|location=Sequence derived from alignment at P-fluviatile_contig13:3207841..3208385+ (Porterinema fluviatile SAG_2381)
GACAAGACCAGCAACAAGGAGGCGTGGGGGTGTTGTTGCAGGCTCAACAC
GACAGCATTTGACATCAGCGAGTCAGGTCTTCGAGGGTCCGCGATTCGCC
TCCGAAAAACCACCGATGGTCAACCCTTGCCCACGTGCCATGGCCATGGC
CAACAGTACATACAAGTGTCCACGACGAACAGGGCTCGTGAAGAAAGCAA
GCAAGAGGGGTACGAGCTGGCACGAAGCCGTGAGATCTGCCCGCCCTGCG
CCGCCAGCACAAGGTGATTCCACTTCAAACACAACACTATTAAAAGTCGC
CGTGCATTCGGAAGTGAAGCGCGCTGCAGGTTCGTCTGCTATCCACGCTC
TCGTGAGCAGAAAGACGATAGGAGAGCCAGAGCAGGGCAGAGTAGCACAG
CGCACAGCAGCGCAGAGAGCGGCAATGGCGACATGGACGGCGGCCTCGAT
TGATCAGCGGCGGGAGGCCGGTCGTGTCGGTCATTAGGCCGTTGACAAGC
CAGCCACAGAAGCCGTTAGCTACCTCAACTTCACATCACCAAAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3207841..3208385+

>mRNA_P-fluviatile_contig13.1964.1 ID=mRNA_P-fluviatile_contig13.1964.1|Name=mRNA_P-fluviatile_contig13.1964.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig13:3207841..3208385+ (Porterinema fluviatile SAG_2381)
ATGGTCAACCCTTGCCCACGTGCCATGGCCATGGCCAACAGTACATACAA
GTGTCCACGACGAACAGGGCTCGTGAAGAAAGCAAGCAAGAGGGGTACGA
GCTGGCACGAAGCCGTGAGATCTGCCCGCCCTGCGCCGCCAGCACAAGGT
GATTCCACTTCAAACACAACACTATTAAAAGTCGCCGTGCATTCGGAAGT
GAAGCGCGCTGCAGGTTCGTCTGCTATCCACGCTCTCGTGAGCAGAAAGA
CGATAGGAGAGCCAGAGCAGGGCAGAGTAGCACAGCGCACAGCAGCGCAG
AGAGCGGCAATGGCGACATGGACGGCGGCCTCGATTGATCAGCGGCGGGA
GGCCGGTCGTGTCGGTCATTAGATGGTCAACCCTTGCCCACGTGCCATGG
CCATGGCCAACAGTACATACAAGTGTCCACGACGAACAGGGCTCGTGAAG
AAAGCAAGCAAGAGGGGTACGAGCTGGCACGAAGCCGTGAGATCTGCCCG
CCCTGCGCCGCCAGCACAAGGTGATTCCACTTCAAACACAACACTATTAA
AAGTCGCCGTGCATTCGGAAGTGAAGCGCGCTGCAGGTTCGTCTGCTATC
CACGCTCTCGTGAGCAGAAAGACGATAGGAGAGCCAGAGCAGGGCAGAGT
AGCACAGCGCACAGCAGCGCAGAGAGCGGCAATGGCGACATGGACGGCGG
CCTCGATTGATCAGCGGCGGGAGGCCGGTCGTGTCGGTCATTAG
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