mRNA_P-fluviatile_contig13.1958.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig13.1958.1 vs. uniprot
Match: A0A6H5KQ27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ27_9PHAE) HSP 1 Score: 228 bits (580), Expect = 4.030e-59 Identity = 280/626 (44.73%), Postives = 320/626 (51.12%), Query Frame = 3
Query: 870 EVSKITNEVRDARAAQRHAELWLEKSLAEVDAVHAVLAHERSVAGAGARNT-----------------PIPQAPQTPXXXXXXXXXXXXNLHRHPPSPAYYGGSGCGSGRRTEGREAAVGPTAQTPTPDSPASILASLGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRSPAVESGLQTPDLDATRPELFSTTRLRSRVGGRGRGMGMAGEDGDIITD---DDGAGDGTLAATALRGEGGRRGDDLFSPPTPTILFGSLAGDGGSTMWGSENNAAAAGAPGAPAAARWLSEGGSGGGEGDARHDAEEYAAAKVMTNRTATTPTKHAVGGRGGGSSKAREDVAASLLSMLRLETSKRKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAFSSQQQAC-------GSHGVR----SEVCPCIRGVQSHGGGTSRS-------------PDLSADYARMDQDWQATKVLALVREARNKLGSTG---------GGREAVKASRAAGSGGGYQPDASSPCGDTSPSSEVASLIQQFDEMLTRSADENVQLRVFCSHLEGLLAAHSDATANGNTSSVGPGRVAGAGARAGGGCSCGRTSAWLAGGSSGY--RPEPPF 2582
+VSKIT EVR++RA QRHAELWLEKSLAEVDAVHAVLA+ERS A P+ + TP H HPP PAY GG G + E AVGPT QTPTP+SP SI+A LG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SG++TPDLD TRPELFS TRLRSRVGGRG +GM ED D +D DD LA T + GG ++ SPPTPT+LFG LAGD GST W + K REDVAASLLSMLRLETSKRKQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX SS G GV V PC GGG + PD A YAR+ Q+ Q ++L LVR+AR K+ S GG+ A CG ++PS+EVASLI+QFDE L+RS +EN QLRVFCSHLEGLLA++ + G + G G +A G C SA +A G + RP PP
Sbjct: 71 DVSKITAEVRESRAGQRHAELWLEKSLAEVDAVHAVLAYERSAVAAXXXXXXXXXXXXXXXXXXXAPYPVDHSMHTPDPTPKLRP------HSHPPFPAYGGGGGATGSMCSP--EVAVGPTVQTPTPESPTSIVAGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPIRSRH-------DSGVETPDLDVTRPELFSATRLRSRVGGRG--LGMMTEDVDAASDYNYDD------LAVTTVTRRGGGHQSEVLSPPTPTVLFGELAGDSGSTTWRVSSXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVREDVAASLLSMLRLETSKRKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPPLDVDKGILGGGRVGVGVFNGGVVRPCDEQAHGSGGGAPMAGNDDGQQQPKQPYPDWFAHYARVGQEKQEAEILRLVRDAREKMVSGXXXXXXXXGCGGKPASXXXXXXXXXXXXXXXXXXGCGTSNPSTEVASLIRQFDEKLSRSLEENTQLRVFCSHLEGLLASNPAPSTGGGVRAGAAMPTGGCGRQADFGVGC--CSADVANGGTAIKCRPSPPL 659
BLAST of mRNA_P-fluviatile_contig13.1958.1 vs. uniprot
Match: D8LT88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT88_ECTSI) HSP 1 Score: 165 bits (417), Expect = 1.100e-39 Identity = 135/335 (40.30%), Postives = 157/335 (46.87%), Query Frame = 3
Query: 306 MDATMAAARADYXXXXXXXXXXLEATRGEKERMDTELVYLRASSRTERLEWNKERKLLSRKIAEADARARDAADGIATADEFVALQKSLANKEATIRNLRKALDAKDAQHAKLKLEAACGSTVQNDVDTLMVRVATLEQALGQEREARKAAEQAAEARSAETRGLERRLAAALESATRAEQTAATSVKEVSKITNEVRDARAAQRHAELWLEKSLAEVDAVHAVLAHERSVAGAGARNTP------------------------IPQAPQTPXXXXXXXXXXXXNLHRHPPSPAYYGGSGCGSGRRTEGREAAVGPTAQTPTPDSPASILASLGG 1238
M+A +AA RADY LEATRGEKE++D+EL++L+ASSRTERL+WNKERK L+RK+AEADARA E R LE RL AALE+A RAE +AA S+++VSKIT EVR++RA QRHAELWLEKSLAEVDAVHAVLA+ERS A + + QTP H HPPSPAY GGSG E AVGPTAQTPTP+SP SILA LGG
Sbjct: 1 MEAKVAAVRADYDAKVAELMADLEATRGEKEQIDSELIFLKASSRTERLDWNKERKALNRKVAEADARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------------------------------------------------------EVRVLETRLKAALEAAARAEDSAAASIEDVSKITAEVRESRAGQRHAELWLEKSLAEVDAVHAVLAYERSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPYLVDHSMQTPDPTPKLRP------HSHPPSPAYGGGSGANGSMCNP--EVAVGPTAQTPTPESPTSILAGLGG 265 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig13.1958.1 >prot_P-fluviatile_contig13.1958.1 ID=prot_P-fluviatile_contig13.1958.1|Name=mRNA_P-fluviatile_contig13.1958.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=820bp MDWPSAPDETAGAPSGSGHALHGKAEPGPPVVSSQCKIAAAHSAQMDATMback to top mRNA from alignment at P-fluviatile_contig13:3151603..3160910+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig13.1958.1 ID=mRNA_P-fluviatile_contig13.1958.1|Name=mRNA_P-fluviatile_contig13.1958.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=9308bp|location=Sequence derived from alignment at P-fluviatile_contig13:3151603..3160910+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig13:3151603..3160910+ >mRNA_P-fluviatile_contig13.1958.1 ID=mRNA_P-fluviatile_contig13.1958.1|Name=mRNA_P-fluviatile_contig13.1958.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4920bp|location=Sequence derived from alignment at P-fluviatile_contig13:3151603..3160910+ (Porterinema fluviatile SAG_2381)back to top |