mRNA_P-fluviatile_contig13.1936.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1936.1
Unique NamemRNA_P-fluviatile_contig13.1936.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2956910..2958890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size847
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1936.1prot_P-fluviatile_contig13.1936.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2956926..2958506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.3450246-UTR-P-fluviatile_contig13:2956909..29569251622815536.3450246-UTR-P-fluviatile_contig13:2956909..2956925Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2956910..2956925 +
1693562171.4478884-UTR-P-fluviatile_contig13:2956909..29569251693562171.4478884-UTR-P-fluviatile_contig13:2956909..2956925Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2956910..2956925 +
1622815536.3899665-UTR-P-fluviatile_contig13:2958506..29588901622815536.3899665-UTR-P-fluviatile_contig13:2958506..2958890Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2958507..2958890 +
1693562171.4874845-UTR-P-fluviatile_contig13:2958506..29588901693562171.4874845-UTR-P-fluviatile_contig13:2958506..2958890Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2958507..2958890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.3569512-CDS-P-fluviatile_contig13:2956925..29570021622815536.3569512-CDS-P-fluviatile_contig13:2956925..2957002Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2956926..2957002 +
1693562171.4591537-CDS-P-fluviatile_contig13:2956925..29570021693562171.4591537-CDS-P-fluviatile_contig13:2956925..2957002Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2956926..2957002 +
1622815536.3680208-CDS-P-fluviatile_contig13:2957691..29578031622815536.3680208-CDS-P-fluviatile_contig13:2957691..2957803Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2957692..2957803 +
1693562171.468422-CDS-P-fluviatile_contig13:2957691..29578031693562171.468422-CDS-P-fluviatile_contig13:2957691..2957803Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2957692..2957803 +
1622815536.379333-CDS-P-fluviatile_contig13:2958248..29585061622815536.379333-CDS-P-fluviatile_contig13:2958248..2958506Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2958249..2958506 +
1693562171.4775248-CDS-P-fluviatile_contig13:2958248..29585061693562171.4775248-CDS-P-fluviatile_contig13:2958248..2958506Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2958249..2958506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1936.1

>prot_P-fluviatile_contig13.1936.1 ID=prot_P-fluviatile_contig13.1936.1|Name=mRNA_P-fluviatile_contig13.1936.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=149bp
MLRLSEQLNNEQDRAISTQLVHRGHIDHLRRDLVVEEERPGYADSEGLPR
RVQKGGRCAESTETNRNGLCGPASVCGPASEVCGRSTAADAAAATGMMTI
SVFSLNVGWDATAMCLRMENGVLYMCHMSCMRKTTDYAQVAVQVVKDG*
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mRNA from alignment at P-fluviatile_contig13:2956910..2958890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1936.1 ID=mRNA_P-fluviatile_contig13.1936.1|Name=mRNA_P-fluviatile_contig13.1936.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1981bp|location=Sequence derived from alignment at P-fluviatile_contig13:2956910..2958890+ (Porterinema fluviatile SAG_2381)
GGCTGCGCGCCCTTCTATGTTGCGACTGTCTGAACAACTGAACAATGAGC
AAGATAGAGCGATTAGTACTCAGCTTGTTCACAGGGGTCACATGTGAGAG
AGTTTACGTTGAGCAGAGAAGCCTGAGCTGAATTTTGAGGAACCGTGGAA
GAGAGAACATACCTGTGTCGGCAGGCTGCAACGGTCGTGCTCTCGCTGGG
AACCGTGTCGCTTGTAACTCGTCCGCAAGGGCATTGAATTCATTCCTGGC
TCTTTCAATCTTTCAATGTCCGCTTTCTCTAGAATGAAAGCGAACGGGTC
GTTTCTGAATGCATTGTAGCGTCTCCGAGGTTGTGCAGCAGAAATATCCA
GCCCTACACGGCAGCTGATGCGTCTGCCGCTGTGTATCTGTGTATACCCA
AGAGTACAACGACACTAGTTAAACGTGGCTTTCATTCAGGAGAAATTATG
TGTCTCGGTCGTTGACGTCGCATTCGCACACTTCAAAAAAGTGAGTTGCC
ACAACTTTCGTAAATCGAACCTCCGCGGGCAGCTCAGCGCTTACACGAAC
ATGAGGCTTCATGATGACGCCATCATCTGTACTGCAAGTGCTCGTCATCG
CAGCCAGTGCGATCGATGAACGGAACCGTTTTGTTTTTTATCTTTTCGTT
CACCTCCTTTGCAAATCAGAGCACGGTATAAAATAAGGCAACTTGCGATG
TGCGGCCCGGTCATAGCCAGAGCCCGCCCAGCTGAACCTTACATGACATT
TCTTGCCCCCGCTTCCACTATATTTATCGCAGTGACCACCTGCGGAGGGA
TCTGGTGGTTGAAGAAGAACGACCCGGCTATGCTGATTCGGAAGGATTAC
CGCGACGAGTACAGAAAGGCGGCCGCTGCGCGGAAAGCACAGAGGTAAGC
ATAGTCACCCTTCTCGGGTTCGGCTCCTTAAAACAAAGAGGGGCGAGAGT
GCTGCCATGCGCTCAAATGTTCACTTACGGTGGTAGCGCGGAAAGGAGCA
AGCGGGTGCCTAGGAGAACGAAGCTGAGGAGTAAGCAAGACATGGGGCTA
TTCCAGCGAGTGATAAGTTCGTTCGGGCTCCTGCACTACTTGGTAGTTTT
CAAATGGCGTTACTCATCCCGCTGGTCGTTCCGCGGCGAGTGGGCGTGAA
CATCCACCGCATAACATGTCTGTGCCCCTCACGCTACACTCCTGCTGATG
ACGGCGTGGTTGGACATCGTGTTGCCTCGGAACATGTCGCATTTTCTTTC
TCCCCTGCTCCAACTCTTGCTTTGTGCCCTGGCGCTGCCGGGCCCTTGAA
ATTTGCGCGCTTCGCCCATTTTCAACGTATTGGCGGCAGACAAACCGAAA
CGGCCTTTGCGGACCAGCAAGCGTTTGCGGACCAGCAAGCGAGGTTTGCG
GAAGGTCAACAGCAGCAGACGCAGCAGCAGCGACGGGGATGATGACGATA
TCGGTTTTCTCGCTGAACGTTGGTTGGGATGCGACGGCGATGTGCCTTCG
AATGGAGAACGGCGTTCTGTACATGTGCCACATGTCGTGCATGCGGAAAA
CGACAGATTACGCTCAAGTCGCGGTACAAGTAGTCAAGGACGGGTGAGGT
GGGGGCGGAAACGGGCTGTGCGTTTGATGCAGAAGGGGGACTTCGTTTCT
CGATTGGCGAAGAGAATTTCTCCCGCCATGCGTGAGGACCACTGCTAGTC
ACCGCTGTGATCGGCTTGGTTGGGTCAGGTGGTCGGGGGTTGTGATTGTC
GTGAAGCGTTGCCTCCGGTATTCACGTGATCCTCAACCTGCTTACAGATA
TTCCGAAGCTTTCACGGCCCCTAACGCTAACCCTTTGATCTTCGTGTTTG
ACTTTCGGAAGCTTTAATCTTAACCCGCCCACCACCAAAGCGAGGCAGCA
AGTTCTCGTGGGCTCCCTGAAATTTGCTCATTTCTCACTGCTCACTAGCT
GGTGTCAAGGGCAAGTACGCCTTCAATACAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2956910..2958890+

>mRNA_P-fluviatile_contig13.1936.1 ID=mRNA_P-fluviatile_contig13.1936.1|Name=mRNA_P-fluviatile_contig13.1936.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=894bp|location=Sequence derived from alignment at P-fluviatile_contig13:2956910..2958890+ (Porterinema fluviatile SAG_2381)
ATGTTGCGACTGTCTGAACAACTGAACAATGAGCAAGATAGAGCGATTAG
TACTCAGCTTGTTCACAGGGGTCACATATGTTGCGACTGTCTGAACAACT
GAACAATGAGCAAGATAGAGCGATTAGTACTCAGCTTGTTCACAGGGGTC
ACATTGACCACCTGCGGAGGGATCTGGTGGTTGAAGAAGAACGACCCGGC
TATGCTGATTCGGAAGGATTACCGCGACGAGTACAGAAAGGCGGCCGCTG
CGCGGAAAGCACAGAGTGACCACCTGCGGAGGGATCTGGTGGTTGAAGAA
GAACGACCCGGCTATGCTGATTCGGAAGGATTACCGCGACGAGTACAGAA
AGGCGGCCGCTGCGCGGAAAGCACAGAGACAAACCGAAACGGCCTTTGCG
GACCAGCAAGCGTTTGCGGACCAGCAAGCGAGGTTTGCGGAAGGTCAACA
GCAGCAGACGCAGCAGCAGCGACGGGGATGATGACGATATCGGTTTTCTC
GCTGAACGTTGGTTGGGATGCGACGGCGATGTGCCTTCGAATGGAGAACG
GCGTTCTGTACATGTGCCACATGTCGTGCATGCGGAAAACGACAGATTAC
GCTCAAGTCGCGGTACAAGTAGTCAAGGACGGGTGAACAAACCGAAACGG
CCTTTGCGGACCAGCAAGCGTTTGCGGACCAGCAAGCGAGGTTTGCGGAA
GGTCAACAGCAGCAGACGCAGCAGCAGCGACGGGGATGATGACGATATCG
GTTTTCTCGCTGAACGTTGGTTGGGATGCGACGGCGATGTGCCTTCGAAT
GGAGAACGGCGTTCTGTACATGTGCCACATGTCGTGCATGCGGAAAACGA
CAGATTACGCTCAAGTCGCGGTACAAGTAGTCAAGGACGGGTGA
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