mRNA_P-fluviatile_contig13.1919.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1919.1
Unique NamemRNA_P-fluviatile_contig13.1919.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2846421..2847274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size324
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1919.1prot_P-fluviatile_contig13.1919.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2846421..2847124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.286479-CDS-P-fluviatile_contig13:2846420..28465551622815536.286479-CDS-P-fluviatile_contig13:2846420..2846555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2846421..2846555 +
1693562171.4133728-CDS-P-fluviatile_contig13:2846420..28465551693562171.4133728-CDS-P-fluviatile_contig13:2846420..2846555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2846421..2846555 +
1622815536.2971733-CDS-P-fluviatile_contig13:2847085..28471241622815536.2971733-CDS-P-fluviatile_contig13:2847085..2847124Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2847086..2847124 +
1693562171.4256034-CDS-P-fluviatile_contig13:2847085..28471241693562171.4256034-CDS-P-fluviatile_contig13:2847085..2847124Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2847086..2847124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.3084192-UTR-P-fluviatile_contig13:2847124..28472741622815536.3084192-UTR-P-fluviatile_contig13:2847124..2847274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2847125..2847274 +
1693562171.4380395-UTR-P-fluviatile_contig13:2847124..28472741693562171.4380395-UTR-P-fluviatile_contig13:2847124..2847274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2847125..2847274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1919.1

>prot_P-fluviatile_contig13.1919.1 ID=prot_P-fluviatile_contig13.1919.1|Name=mRNA_P-fluviatile_contig13.1919.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=58bp
QQRWQPRERRRRQKRYRERRRWGGEAEVVIETDKAALVQQFGKKKKKKKK
PIEGEEL*
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mRNA from alignment at P-fluviatile_contig13:2846421..2847274+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1919.1 ID=mRNA_P-fluviatile_contig13.1919.1|Name=mRNA_P-fluviatile_contig13.1919.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=854bp|location=Sequence derived from alignment at P-fluviatile_contig13:2846421..2847274+ (Porterinema fluviatile SAG_2381)
CAGCAGCGGTGGCAACCGAGGGAGCGGCGACGGCGGCAGAAACGATACCG
GGAGCGCCGCCGGTGGGGGGGCGAGGCGGAGGTGGTTATCGAGACGGACA
AGGCCGCGCTAGTACAGCAGTTCGGCAAGAAGAAGGTGCGGGTGTTTTGA
TCCACCATGCGCGTCCTCTTGTGTTTGCTTACGTGTGGCGTATGAGTGGC
TGCTCTGTCGCGTATCGGTGGTAGAGAGGTAATCGCCGACGGACTGAAGG
AGCCTGCGCACGGACTTGGGGAGTTTGCTCACAAAGATACTCAGGGGCGA
CCCGATGCCTGAACAAGAGTACTGGTGGCATTTGCTGTAGCTTCTTGTGA
GATGTGCCCGAGTCGTCTAGGCACAAATTGGCGAAGCAAAACATGGAGGA
AGATTTTCTGCTACGCCTGCGACCAGGCTCGATTCCCTCACCCCTATTTT
TCATCGATCCAGCAGCGGACTGTCGCCGCATCCAAAACAATGTTTGCGCG
TGACTGTCGTGGTCGGCGACCGCGCGTTGAAAACTACAATATCAAAAGCG
TGCTTATCCCCCCCGTTCCCCCCCCCTCCCCTCTGTTGCCCCCACCGCGT
TCCCTTTATTCTCCGCGCCCCCTTTGCGCTGGCCATCGCTTCGATCTGCG
GCCGGGAAATAACAGAAGAAGAAAAAGAAACCTATTGAGGGAGAGGAATT
GTAGGAACAGAGGGGCGCCGGCGAGGCTTCGAGAAAACAGGCTAGATGCG
AAGCACGTTCATTCCCGAGTAGTTTTTCAGTTGGGAGTCCGCCAGCACGA
TCGGGTTCTGATTTTTTTTGCCTCTCGCATCTCCGGGCGGCCAACGTAAG
TACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2846421..2847274+

>mRNA_P-fluviatile_contig13.1919.1 ID=mRNA_P-fluviatile_contig13.1919.1|Name=mRNA_P-fluviatile_contig13.1919.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig13:2846421..2847274+ (Porterinema fluviatile SAG_2381)
CAGCAGCGGTGGCAACCGAGGGAGCGGCGACGGCGGCAGAAACGATACCG
GGAGCGCCGCCGGTGGGGGGGCGAGGCGGAGGTGGTTATCGAGACGGACA
AGGCCGCGCTAGTACAGCAGTTCGGCAAGAAGAAGCAGCAGCGGTGGCAA
CCGAGGGAGCGGCGACGGCGGCAGAAACGATACCGGGAGCGCCGCCGGTG
GGGGGGCGAGGCGGAGGTGGTTATCGAGACGGACAAGGCCGCGCTAGTAC
AGCAGTTCGGCAAGAAGAAGAAGAAGAAAAAGAAACCTATTGAGGGAGAG
GAATTGTAGAAGAAGAAAAAGAAACCTATTGAGGGAGAGGAATTGTAG
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