mRNA_P-fluviatile_contig13.1918.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig13.1918.1
Unique Name	mRNA_P-fluviatile_contig13.1918.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig13.1918.1 vs. uniprot
Match: D7G1A8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.640e-60
Identity = 115/156 (73.72%), Postives = 122/156 (78.21%), Query Frame = 1

Query:    4 KPKIEKLQEMLGSVDAAEDDGWAEVVEKKSVVATGGKQVSDLIDMATFMTEEESTAVKLEKQDIKQAFHDARTTKEAEKTEEVPEAANGEAKAEDAGGKSKGLSGDIFGGAAARSSG-LGGGWKKRMEERELRQRQEQLSVDNVSAFPSLKDAMSA 468
            KPKIEKLQE+LG    AEDDGW +VVEKKSVVATGGK VSDLIDM   MTE+ESTA KLEKQDIKQAFHDART KEAEK E                 K KGLSGDIFGG AARS+G LGGGWK+RMEEREL+QRQE LSV+N SAFPSLKDAMSA
Sbjct:   43 KPKIEKLQEILGGPGPAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXXXXXXXXXXTAT---KPKGLSGDIFGGGAARSAGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA 195

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig13.1918.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig13.1918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G1A8_ECTSI	1.640e-60	73.72	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig13	contig	P-fluviatile_contig13:2843520..2846245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-12_005190.1
Exons	4
Model size	616
Cds size	585
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig13.1918.1	prot_P-fluviatile_contig13.1918.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig13 2843550..2846245 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815581.452249-UTR-P-fluviatile_contig13:2843519..2843549	1622815581.452249-UTR-P-fluviatile_contig13:2843519..2843549	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig13 2843520..2843549 +
1693562337.7992835-UTR-P-fluviatile_contig13:2843519..2843549	1693562337.7992835-UTR-P-fluviatile_contig13:2843519..2843549	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig13 2843520..2843549 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815581.4663854-CDS-P-fluviatile_contig13:2843549..2843650	1622815581.4663854-CDS-P-fluviatile_contig13:2843549..2843650	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2843550..2843650 +
1693562337.8133523-CDS-P-fluviatile_contig13:2843549..2843650	1693562337.8133523-CDS-P-fluviatile_contig13:2843549..2843650	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2843550..2843650 +
1622815581.4784818-CDS-P-fluviatile_contig13:2844352..2844418	1622815581.4784818-CDS-P-fluviatile_contig13:2844352..2844418	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2844353..2844418 +
1693562337.8281302-CDS-P-fluviatile_contig13:2844352..2844418	1693562337.8281302-CDS-P-fluviatile_contig13:2844352..2844418	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2844353..2844418 +
1622815581.4903755-CDS-P-fluviatile_contig13:2845027..2845297	1622815581.4903755-CDS-P-fluviatile_contig13:2845027..2845297	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2845028..2845297 +
1693562337.8382745-CDS-P-fluviatile_contig13:2845027..2845297	1693562337.8382745-CDS-P-fluviatile_contig13:2845027..2845297	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2845028..2845297 +
1622815581.504417-CDS-P-fluviatile_contig13:2846097..2846245	1622815581.504417-CDS-P-fluviatile_contig13:2846097..2846245	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2846098..2846245 +
1693562337.8480625-CDS-P-fluviatile_contig13:2846097..2846245	1693562337.8480625-CDS-P-fluviatile_contig13:2846097..2846245	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 2846098..2846245 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig13:2843520..2846245+
coding sequence from alignment at P-fluviatile_contig13:2843520..2846245+

protein sequence of mRNA_P-fluviatile_contig13.1918.1

>prot_P-fluviatile_contig13.1918.1 ID=prot_P-fluviatile_contig13.1918.1|Name=mRNA_P-fluviatile_contig13.1918.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=195bp
MLGSVDAAEDDGWAEVVEKKSVVATGGKQVSDLIDMATFMTEEESTAVKL
EKQDIKQAFHDARTTKEAEKTEEVPEAANGEAKAEDAGGKSKGLSGDIFG
GAAARSSGLGGGWKKRMEERELRQRQEQLSVDNVSAFPSLKDAMSAPMKP
KQRAPEPDPNRWVRRGAGGSAAAAAIKAALGRDAEAAAPAPAPKA

mRNA from alignment at P-fluviatile_contig13:2843520..2846245+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig13.1918.1 ID=mRNA_P-fluviatile_contig13.1918.1|Name=mRNA_P-fluviatile_contig13.1918.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2726bp|location=Sequence derived from alignment at P-fluviatile_contig13:2843520..2846245+ (Porterinema fluviatile SAG_2381)
GGAAAACCCAAGATAGAGAAGCTCCAGGAGATGCTCGGCAGTGTCGACGC
CGCGGAAGACGATGGATGGGCGGAAGTCGTCGAGAAGAAGAGCGTCGTCG
CCACCGGCGGGAAGCAGGTGTCCGACCTTATGTGAGTGCGCGCGCGCAAG
GCACACGCTTGCCGTTTGCGATATAGGGTGTCGTGCTTTATTGCTTGGCT
TGGCTTGGCTTTGCTTGATTTGGCGTTGCTTTGCGTTGCTTGATATAGCG
TTGCTTGGCGTTGCTTGCTTGGCGTTGCTTGGCTGCGCTTGCCTTTACCC
TGCCTGACTTGACGTCGGCCGCACCCGACGACGTTAGGAGCGAGAGTCGA
TCTTGGAACAAAATAGCTGCTGCTGCTGCTGCTGCTGCTGTGCGTTGTGA
GCAAGTCGGCGAGTGCAGAGTGAGGGATGATCCTTTCCGTAAGTGGATGA
GGTGTTATTCACGGCCGAAGTTTCCCCGCGTCGTCGCGGGCTTGTTCTTT
GTTGCTTCTTTCTTTTTCATGGTATCGATACATATGTTGTTTCCGATCAG
TGAACGGGAACGTTGTTACTTTTGCTGGATGTTGCTGCGGTTTCCCAGTG
AGCATGAAATCCACCGAAATCAGCGTCGCCTCGCCTGTTGCTTCCATTTC
AGCGTTGGTCGTTCGCATCCGTCTCTACCGCAAGATGTGCATGTACGCTC
GTGATAACGCGCGCTCGAGATTTAATGCATTTGCCCGCGTGCTTATTCCC
TCCCCCCCTCCCCCCCACCTCGATGTTTTCCACCTCGACGCACTGTTGTG
CATGCCTTGTCGTCGCGAATTTGGCATCATCAGCGACATGGCCACCTTCA
TGACGGAGGAGGAGTCTACAGCAGTCAAGCTCGAGAAACAGGACATCAAG
TGAGAGCCAGCCCCACGGAGCATTTATTCAATTTCTTGCGGATGTTGGTG
TCTTTTCACGCCGGCCGAGTTCTAGGAATTAACTATTGGTTGGGGCGGTG
CACGCGGCATGCGGTGATTCGTGTGCCACCCAGACGAAGGCTGAGTCACT
TCTCCAGTTTTGTCTGGAAGGCTGGGTTGCTACCAGACGCACGACAAAGG
TATCTTTCCCTTGTGAGTCAGTGCCCTGCCAAAATTCGGGAGAGATCACA
AAATTTGGCAAAAATTCAGTCCACGGTCCGGTGGAATTGGTTGTTCGCGT
ACTGCGCTGCTGCATCCTGCTGCCCTGAAAGCAAGCACTTGCACGAGGTG
TTGTAAGAAATTCGGGTCAAGCAGTCTTGTGGGGGCGAGTATGAGGGCGT
CAGGGTATCATTCGTCTCCGTCAAAGCCCCCTGTCCGCTTCCCACAACAC
ATGGATGCCCAGTCAACGCTCAAGCTGAAACGTCTGCCGCCCGTCCCCCA
TCTCAACTCCCCCACTCTCCGTCGATGACGAGTCTCCAGTTCCCACAACA
TGTTGACGCTCAACACCCCTCCCGAACTTCCTTCATCCCTCCCCCCCCTC
CAATAAAGGCAAGCGTTCCACGACGCGAGAACCACCAAGGAAGCCGAGAA
AACAGAGGAAGTGCCGGAAGCCGCCAATGGGGAGGCTAAGGCCGAGGACG
CGGGGGGGAAGTCGAAGGGGCTGTCGGGGGACATTTTCGGCGGCGCCGCG
GCGCGCTCCTCGGGTTTGGGCGGGGGCTGGAAGAAGCGAATGGAGGAGCG
TGAGCTGAGGCAACGGCAGGAGCAGCTGAGCGTGGACAACGTGTCGGCCT
TCCCGTCGCTGAAGGACGCCATGAGCGCGTGAGTTTTTCCGTGATACAGA
TTTACAGGACCGGGGCGCCCGGAGAGGAACGCTTTCGAACGATCTCTCAT
GTGCACCGTGCGTGGTGTAGGCGTTGGTGGTAGTTGAAGGGTGCTTCGGC
CTTTTTCTGTTGTTCGTTTGTTGAATATTTGCAGTTCGACGCAGTACGTT
GGCTTGCATTGGCGTTGGTCGTGTGAAGAGTCCGAAAGGTTCGGACAGCA
GGTTAGATGATGTTCTAGGGGAGGGAAACATAGAACGCCTTCGCTGGACG
CAGAACTTAGTGTTGGATGCTGAGCGAGCGATGCTCTTTTTCTACCCTCC
CCGCCCTCGGGGTCCACTTTGTTCAGTGTTATTTTTTGGTAGCCTTATGA
GGGTAAGTTATCCTGTGACCACGGGAATGGACCGTATCTAGTATTGGTCA
GTACGGACGAAAGAGGGTACGGAGCGGAGATATCGGGATGCTTCTTAACG
TGAAAACAACAACACGTATCCTCTGCACAAGTGGCGTGGTCTCTTAAGTA
CAGAGAACGTTGGTCGCACGCATGACGGAAGAGGATATCGTAGGGATGGA
CGCAGCCAGGCAGAATTGGCAACGATTCTTTTGGCGTAAACTCATTTCTT
GGCCGGACCATTTCGTTGGCAAGTGCCTGCTGGTAGAGCTGAACCTCTAC
TGGTGGTCTCCTGCCGCTACACACAAAGAGTCATGGCTAACAGCCCCCCC
CCGTCCGCCTGCGTCCGCCTTTACCATTCCGCCTGTTTCTTCGCCGACAA
TCAATCGAACGGATCGACGAACAAACAGCCCGATGAAGCCGAAGCAGCGC
GCCCCGGAGCCGGACCCAAATCGATGGGTCAGGCGCGGCGCTGGCGGCTC
CGCCGCCGCCGCCGCTATCAAGGCAGCCCTCGGGAGGGACGCGGAGGCGG
CGGCCCCGGCGCCGGCACCCAAGGCC

Coding sequence (CDS) from alignment at P-fluviatile_contig13:2843520..2846245+

>mRNA_P-fluviatile_contig13.1918.1 ID=mRNA_P-fluviatile_contig13.1918.1|Name=mRNA_P-fluviatile_contig13.1918.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1170bp|location=Sequence derived from alignment at P-fluviatile_contig13:2843520..2846245+ (Porterinema fluviatile SAG_2381)
ATGCTCGGCAGTGTCGACGCCGCGGAAGACGATGGATGGGCGGAAGTCGT
CGAGAAGAAGAGCGTCGTCGCCACCGGCGGGAAGCAGGTGTCCGACCTTA
TATGCTCGGCAGTGTCGACGCCGCGGAAGACGATGGATGGGCGGAAGTCG
TCGAGAAGAAGAGCGTCGTCGCCACCGGCGGGAAGCAGGTGTCCGACCTT
ATCGACATGGCCACCTTCATGACGGAGGAGGAGTCTACAGCAGTCAAGCT
CGAGAAACAGGACATCAACGACATGGCCACCTTCATGACGGAGGAGGAGT
CTACAGCAGTCAAGCTCGAGAAACAGGACATCAAGCAAGCGTTCCACGAC
GCGAGAACCACCAAGGAAGCCGAGAAAACAGAGGAAGTGCCGGAAGCCGC
CAATGGGGAGGCTAAGGCCGAGGACGCGGGGGGGAAGTCGAAGGGGCTGT
CGGGGGACATTTTCGGCGGCGCCGCGGCGCGCTCCTCGGGTTTGGGCGGG
GGCTGGAAGAAGCGAATGGAGGAGCGTGAGCTGAGGCAACGGCAGGAGCA
GCTGAGCGTGGACAACGTGTCGGCCTTCCCGTCGCTGAAGGACGCCATGA
GCGCGCAAGCGTTCCACGACGCGAGAACCACCAAGGAAGCCGAGAAAACA
GAGGAAGTGCCGGAAGCCGCCAATGGGGAGGCTAAGGCCGAGGACGCGGG
GGGGAAGTCGAAGGGGCTGTCGGGGGACATTTTCGGCGGCGCCGCGGCGC
GCTCCTCGGGTTTGGGCGGGGGCTGGAAGAAGCGAATGGAGGAGCGTGAG
CTGAGGCAACGGCAGGAGCAGCTGAGCGTGGACAACGTGTCGGCCTTCCC
GTCGCTGAAGGACGCCATGAGCGCCCCGATGAAGCCGAAGCAGCGCGCCC
CGGAGCCGGACCCAAATCGATGGGTCAGGCGCGGCGCTGGCGGCTCCGCC
GCCGCCGCCGCTATCAAGGCAGCCCTCGGGAGGGACGCGGAGGCGGCGGC
CCCGGCGCCGGCACCCAAGGCCCCCGATGAAGCCGAAGCAGCGCGCCCCG
GAGCCGGACCCAAATCGATGGGTCAGGCGCGGCGCTGGCGGCTCCGCCGC
CGCCGCCGCTATCAAGGCAGCCCTCGGGAGGGACGCGGAGGCGGCGGCCC
CGGCGCCGGCACCCAAGGCC